HHsearch alignment for GI: 254780598 and conserved domain: COG3637
>COG3637 Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=3.2e-33 Score=188.50 Aligned_cols=178 Identities=26% Similarity=0.367 Sum_probs=140.2
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEEE
Q ss_conf 94437899999999984100002466543566666555634554444441154210001223333446677-77760268
Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAADPVRRAHHGGRGVVPTIATNRYVPIRHDFNGPYAGLSALYNGSFGEE-AHHNAGGS 79 (205)
Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~~~~~~~~~~~~~~~~~~~~~~w~G~y~g~~~g~~~~~~~~-~~~~~~~G 79 (205)
T Consensus 1 mk~~l~~a~~~~---~~~~~a~aad~-----------------------~~~w~~~~~~g~a~~~~~~~~~~~~~~~~~G 54 (199)
T COG3637 1 MKKLLAAAALAA---LLLSAAAAADA-----------------------AAGWYGTYSGGYAGSDWSGSDSSPSIGFGGG 54 (199)
T ss_pred CHHHHHHHHHHH---HHHHHHHHHHH-----------------------HCCCCEEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 906999999999---87514444444-----------------------2387068863488426567764435665422
Q ss_pred EE-EEEEEECCCEEEEEEEEEEECCCCCC----CCCCCC--CCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEEC---C
Q ss_conf 99-85464048379984510132155566----662122--32148999897543127677898854477644431---3
Q gi|254780598|r 80 IF-AGYNVEDSCIMYGVEGDVRYTVPVLA----DNIHSL--HGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYET---G 149 (205)
Q Consensus 80 ~~-~GYn~q~~~~V~G~e~d~~~~~~~~~----~~~~~~--~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~---~ 149 (205)
T Consensus 55 ~~~~g~n~~~~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a~~~~~~~~~~~~Y~~aGvg~~~~k~~~~~~ 134 (199)
T COG3637 55 LKLAGYNLKYRYSVLGVEGSFTYTGQSGRYSGGSGKNQVDNKAWYGSLRAGPDYRINDRFSPYGGAGVAYGKVKTSTDEV 134 (199)
T ss_pred EEEEEEEEECCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCEECCCCEEEEEECCEEEEEEEEECCCC
T ss_conf 16676873358467888988761024665447666444442057899998655105864444040105768998712566
Q ss_pred CCC-CCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC---------CCCCCEEEEEEEEEEC
Q ss_conf 455-5677520479973466100488679999999975056---------5566226999998539
Q gi|254780598|r 150 KAG-EITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK---------VEGFYNTISLGVGMKF 205 (205)
Q Consensus 150 ~~~-~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~---------~~~~~~~~~~G~~ykF 205 (205)
T Consensus 135 ~~~~~~s~~~~g~~~gAGv~~-~~tdnv~vd~~Y~y~~~g~~~~~~~~~~~~~~~~~v~vGv~YkF 199 (199)
T COG3637 135 GGSADESKTKTGYAYGAGVQY-NPTDNVAIDLGYEYSDFGKKDGVDGGYSGDVKTHTVKVGVGYKF 199 (199)
T ss_pred CCCCCCCCCEEEEEEEEEEEE-CCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf 741167655788678410798-15598799889998815886456754136401340899605659