HHsearch alignment of GI: 254780598 and MMDB domain: 2f1v_A_
>2f1v_A (A:) Outer membrane protein W; outer membrane protein beta barrel; 2.70A {Escherichia coli K12} PDB: 2f1t_A
Probab=99.85 E-value=4.3e-20 Score=120.66 Aligned_cols=150 Identities=13% Similarity=0.036 Sum_probs=105.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-----------CCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCC---CCCCC----
Q ss_conf 154210001223333446677-----------777602689985464048379984510132155566---66212----
Q gi|254780598|r 51 HDFNGPYAGLSALYNGSFGEE-----------AHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLA---DNIHS---- 112 (205)
Q Consensus 51 ~~w~G~y~g~~~g~~~~~~~~-----------~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~---~~~~~---- 112 (205)
++|+++|+++++|+.....+. .++++.+++.+||+++.. +.+|+++.+...... .....
T Consensus 1 ~~~~g~Yig~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gy~~~~~---~~ve~~~~~~~~~~~~~~~~~~~~~~~ 77 (197)
T 2f1v_A 1 HEAGEFFMRAGSATVRPTEGAGGTLGSLGGFSVTNNTQLGLTFTYMATDN---IGVELLAATPFRHKIGTRATGDIATVH 77 (197)
T ss_dssp -CTTCEEEEEEEEEEECCCC---------CCEECCEEEEEEEEEEESSSS---EEEEEEEESCEEEEEEETTTEEEEEEE
T ss_pred CCCCCEEEEECEEEECCCCCCCCCCCCCCCEEECCCEEEEEEEEEEEECC---CEEEEEEEEEEEEEECCCCCCCCCCEE
T ss_conf 97778899946699886467886436766348678748868999995067---215667656100010124777522045
Q ss_pred CCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCC---------CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEE
Q ss_conf 23214899989754312767789885447764443134---------555677520479973466100488679999999
Q gi|254780598|r 113 LHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGK---------AGEITPIAIGGTAGVGVEVGGLSESLVARLEYR 183 (205)
Q Consensus 113 ~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~---------~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~ 183 (205)
........+-+... ..+++.||+.+|+.+.+.+.+.. ....+++.+++.+|+|++| .|+++|++++|||
T Consensus 78 ~~~~~~~~~y~~~~-~~~~~~py~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y-~l~~~~~l~~eyr 155 (197)
T 2f1v_A 78 HLPPTLMAQWYFGD-ASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDY-LINRDWLVNMSVW 155 (197)
T ss_dssp EECCEEEEEEECSC-TTCSEEEEEEEEEEEEEEEEEEECHHHHHTTEEEEEECCEEEEEEEEEEEE-ECSSSEEEEEEEE
T ss_pred EECCEEEEEEEECC-CCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEE-ECCCCEEEEEEEE
T ss_conf 50424889998617-777588999732177899600015677654221244566383899734899-9079839999999
Q ss_pred EEECCC--------------CCCCCEEEEEEEEEEC
Q ss_conf 975056--------------5566226999998539
Q gi|254780598|r 184 ASKYSK--------------VEGFYNTISLGVGMKF 205 (205)
Q Consensus 184 y~df~~--------------~~~~~~~~~~G~~ykF 205 (205)
|.++.+ ++.+.+.+++|+.|||
T Consensus 156 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Y~F 191 (197)
T 2f1v_A 156 YMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF 191 (197)
T ss_dssp EECCEEEEEEEESSCCCCEEEECCCEEEEEEEEEEE
T ss_pred EEECCCCEEEECCCCCCCEEEEECCEEEEEEEEEEE
T ss_conf 997455157842886311048727138999999996