Query gi|254780598|ref|YP_003065011.1| outer membrane protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 205 No_of_seqs 139 out of 814 Neff 7.4 Searched_HMMs 33803 Date Wed Jun 1 15:27:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780598.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1p4t_A Outer membrane protein 99.9 4.9E-25 1.5E-29 146.1 15.1 147 53-205 3-155 (155) 2 >1qjp_A Outer membrane protein 99.9 1.3E-21 4E-26 128.4 17.5 151 51-205 2-170 (171) 3 >1orm_A Outer membrane protein 99.9 2.6E-24 7.7E-29 142.3 -5.6 132 71-205 15-148 (148) 4 >2f1v_A Outer membrane protein 99.9 4.3E-20 1.3E-24 120.7 15.5 150 51-205 1-191 (197) 5 >2k0l_A Outer membrane protein 99.8 2.6E-19 7.7E-24 116.7 18.1 152 50-205 13-192 (216) 6 >2jmm_A Outer membrane protein 99.8 1E-19 3E-24 118.7 14.4 142 53-205 4-150 (156) 7 >2f1c_X OMPG, outer membrane p 99.1 6.7E-09 2E-13 63.2 16.0 51 154-205 227-280 (286) 8 >1uyn_X NALP; autotransporter, 98.9 2.1E-07 6.2E-12 55.5 14.5 128 75-205 154-308 (308) 9 >2qom_A Serine protease ESPP; 98.8 3E-07 8.9E-12 54.7 13.7 150 54-205 92-277 (285) 10 >3kvn_X Esterase ESTA; beta ba 98.6 6.5E-06 1.9E-10 47.8 15.2 128 75-205 154-311 (311) 11 >2por_A Porin; HET: C8E; 1.80A 98.1 0.00039 1.2E-08 38.7 16.3 46 156-205 256-301 (301) 12 >1pho_A Phosphoporin; outer me 98.0 0.00041 1.2E-08 38.6 18.2 80 120-205 247-330 (330) 13 >3prn_A Porin; integral membra 97.9 0.00053 1.6E-08 38.0 13.1 38 162-205 252-289 (289) 14 >2j1n_A Outer membrane protein 97.9 0.00072 2.1E-08 37.3 17.5 46 159-205 294-346 (346) 15 >1i78_A Protease VII; integral 97.9 0.00073 2.1E-08 37.3 15.3 84 120-205 181-297 (297) 16 >2zfg_A Outer membrane protein 97.8 0.0012 3.6E-08 36.1 16.3 77 123-205 260-340 (340) 17 >2erv_A Hypothetical protein P 97.6 0.0027 8.1E-08 34.3 16.1 114 90-205 34-150 (150) 18 >2f1c_X OMPG, outer membrane p 97.4 0.0042 1.2E-07 33.4 15.3 110 71-185 62-174 (286) 19 >2jmm_A Outer membrane protein 96.7 0.013 3.7E-07 30.9 8.3 88 73-169 54-148 (156) 20 >1qjp_A Outer membrane protein 96.4 0.03 8.8E-07 29.0 8.8 19 118-136 121-139 (171) 21 >2qom_A Serine protease ESPP; 96.1 0.059 1.7E-06 27.5 15.3 112 73-186 77-210 (285) 22 >2k0l_A Outer membrane protein 96.0 0.045 1.3E-06 28.1 8.0 68 74-141 90-166 (216) 23 >1uyn_X NALP; autotransporter, 96.0 0.063 1.9E-06 27.3 14.7 69 116-185 153-235 (308) 24 >2wjr_A Probable N-acetylneura 95.8 0.077 2.3E-06 26.9 17.5 53 152-205 157-214 (214) 25 >3kvn_X Esterase ESTA; beta ba 95.8 0.078 2.3E-06 26.9 17.0 30 74-103 59-89 (311) 26 >2o4v_A Porin P; outer membran 95.4 0.11 3.2E-06 26.1 18.4 49 156-205 358-411 (411) 27 >2wjr_A Probable N-acetylneura 95.3 0.12 3.5E-06 25.9 15.0 98 78-187 54-152 (214) 28 >2fgq_X OMP32, outer membrane 94.9 0.16 4.9E-06 25.2 16.3 48 157-205 268-332 (332) 29 >2f1v_A Outer membrane protein 94.8 0.15 4.3E-06 25.5 7.1 32 112-143 128-159 (197) 30 >3bry_A TBUX; beta barrel, out 94.3 0.23 6.8E-06 24.4 16.0 22 164-186 339-360 (441) 31 >2vdf_A OPCA, outer membrane p 92.9 0.41 1.2E-05 23.2 16.0 50 156-205 184-253 (253) 32 >2qtk_A Probable porin; outer 92.4 0.48 1.4E-05 22.8 13.8 44 160-205 341-388 (390) 33 >3jty_A BENF-like porin; PFL_1 92.3 0.5 1.5E-05 22.7 15.5 45 160-205 343-391 (402) 34 >3bs0_A TODX; beta barrel, out 89.2 1 3E-05 21.1 15.4 84 119-205 335-433 (439) 35 >3dwo_X Probable outer membran 88.2 1.2 3.5E-05 20.8 11.1 45 160-205 336-389 (451) 36 >3dwn_A Long-chain fatty acid 85.3 1.8 5.2E-05 19.9 13.1 21 162-183 368-388 (427) 37 >2a3m_A COG3005: nitrate/TMAO 83.9 0.34 1E-05 23.5 0.8 26 1-26 1-26 (83) 38 >1af6_A Maltoporin, LAMB; memb 79.5 3.1 9E-05 18.7 14.6 65 117-182 305-369 (421) 39 >2qdz_A TPSB transporter FHAC; 78.0 3.4 0.0001 18.4 9.3 46 158-205 342-390 (390) 40 >2odj_A Porin D; outer membran 66.4 6.6 0.0002 16.9 14.7 48 157-205 364-417 (428) 41 >1jb0_F Photosystem 1 reaction 53.5 3.3 9.8E-05 18.5 0.1 27 1-27 1-29 (79) 42 >1xt8_A Putative amino-acid tr 43.5 6.1 0.00018 17.1 0.2 17 1-17 1-17 (203) 43 >2qn4_A RASI, alpha-amylase/su 41.2 8.8 0.00026 16.3 0.7 31 1-31 1-31 (200) 44 >2vx5_A Cellvibrio japonicus m 38.6 11 0.00032 15.8 0.8 18 1-18 3-20 (396) 45 >2dck_A Xylanase J; family 11, 37.2 19 0.00057 14.6 1.9 14 1-14 1-14 (232) 46 >1a0s_P Sucrose-specific porin 35.9 23 0.00067 14.2 19.4 127 73-203 262-409 (413) 47 >2gr7_A Adhesin; trimeric auto 34.4 24 0.00071 14.1 6.4 39 162-205 91-129 (129) 48 >1dbg_A Chondroitinase B; beta 34.2 10 0.00031 15.9 0.1 29 1-29 1-29 (474) 49 >2w2n_P Proprotein convertase 33.6 10 0.0003 16.0 -0.0 27 1-27 1-27 (114) 50 >2i3y_A Epididymal secretory g 33.1 16 0.00048 14.9 1.0 18 1-18 1-18 (215) 51 >1y0g_A Protein YCEI; lipid bi 31.6 12 0.00034 15.7 0.0 23 1-24 1-23 (191) 52 >3dzm_A TTOA, hypothetical con 30.0 29 0.00085 13.6 7.9 51 131-182 100-157 (214) 53 >2f2f_C CDT C, cytolethal dist 28.9 21 0.00061 14.4 0.9 14 1-14 1-14 (186) 54 >3e4r_A Nitrate transport prot 28.5 15 0.00043 15.2 0.1 15 1-15 1-15 (181) 55 >3cbc_A Neutrophil gelatinase- 28.0 27 0.00081 13.8 1.4 18 1-18 1-18 (198) 56 >1zye_A Thioredoxin-dependent 26.8 21 0.00063 14.3 0.7 25 1-25 1-25 (220) 57 >3c9h_A ABC transporter, subst 24.9 17 0.00049 14.9 -0.2 18 1-18 1-18 (355) 58 >1toa_A Tromp-1, protein (peri 24.7 15 0.00046 15.0 -0.3 19 1-19 6-24 (195) 59 >1twy_A ABC transporter, perip 24.3 19 0.00055 14.6 0.0 13 1-13 1-13 (290) 60 >2gr8_A Adhesin; trimeric auto 23.9 38 0.0011 13.0 6.4 39 162-205 61-99 (99) 61 >2guf_A Vitamin B12 transporte 22.9 40 0.0012 12.9 15.8 18 124-141 242-259 (461) 62 >2w5v_A Alkaline phosphatase; 22.9 27 0.0008 13.8 0.6 16 1-16 1-16 (342) 63 >3lay_A Zinc resistance-associ 22.2 22 0.00064 14.3 0.0 17 1-17 25-41 (175) 64 >1us5_A Putative GLUR0 ligand 21.4 23 0.00068 14.2 0.0 19 1-25 1-19 (314) No 1 >>1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A {Neisseria meningitidis} (A:) Probab=99.93 E-value=4.9e-25 Score=146.06 Aligned_cols=147 Identities=16% Similarity=0.112 Sum_probs=119.1 Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCC Q ss_conf 421000122333344667-7777602689985464048379984510132155566662122321489998975431276 Q gi|254780598|r 53 FNGPYAGLSALYNGSFGE-EAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDS 131 (205) Q Consensus 53 w~G~y~g~~~g~~~~~~~-~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~ 131 (205) -+++|+|..+|+.....+ +.+++...++.+||+|+. +++|+++.+...........+. +...+.++..|+++++ T Consensus 3 ~~~~yvg~~~G~~~~~~~~~~~~~~~~g~~~GY~fn~----~~~e~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 77 (155) T 1p4t_A 3 ASGFYVQADAAHAKASSSLGSAKGFSPRISAGYRIND----LRFAVDYTRYKNYKAPSTDFKL-YSIGASAIYDFDTQSP 77 (155) T ss_dssp CEEEEEEEEEEEEEEECSSCEEEEECCEEEEEEEETT----EEEEEEEEEEEESSCCSSCCEE-EEEEEEEEEECCCSSS T ss_pred CCCEEEEEECEEEECCCCCCCCCCEEEEEEEEEECCC----EEEEEEEEEECCCCCCCCEEEE-EEEEEEEEEEECCCCC T ss_conf 7642897864176134766778857489999998079----9999999995354678702578-8999999998436785 Q ss_pred EEEEEEEEEEEEEEEECCCC-CCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC----CCCCEEEEEEEEEEC Q ss_conf 77898854477644431345-556775204799734661004886799999999750565----566226999998539 Q gi|254780598|r 132 LLLYATVGPDVAQKYETGKA-GEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV----EGFYNTISLGVGMKF 205 (205) Q Consensus 132 ~l~Y~~~G~a~~~~~~~~~~-~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~----~~~~~~~~~G~~ykF 205 (205) +.||+++|+++++.+.+... .+.+++..++.+|+|+|| +|+|||++++||||+++++. +.+.|.+++|++||| T Consensus 78 ~~~Y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y-~i~~~~~~~~~y~y~~~~~~~~~~~~~~~~~~lGv~Y~F 155 (155) T 1p4t_A 78 VKPYLGARLSLNRASVDLGGSDSFSQTSIGLGVLTGVSY-AVTPNVDLDAGYRYNYIGKVNTVKNVRSGELSAGVRVKF 155 (155) T ss_dssp EEEEEEEEEEEEEEEEEETTEEEECCCEEEEEEEEEEEE-EEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEC T ss_pred EEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEEC T ss_conf 669999889999998201555655663273147317999-945899999999999766766575200228999999999 No 2 >>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} (A:) Probab=99.89 E-value=1.3e-21 Score=128.41 Aligned_cols=151 Identities=21% Similarity=0.277 Sum_probs=119.9 Q ss_pred CCCCCCCCCCCCCCCCCCC--------CCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCC---CCEEEE Q ss_conf 1542100012233334466--------77777602689985464048379984510132155566662122---321489 Q gi|254780598|r 51 HDFNGPYAGLSALYNGSFG--------EEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSL---HGIGGS 119 (205) Q Consensus 51 ~~w~G~y~g~~~g~~~~~~--------~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~---~~~~~~ 119 (205) .+|+++|+|+++|+..... ....+++..++.+||+++.+ +++|+.+.+............ ...... T Consensus 2 ~~~~~~yvg~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~Gy~~~~~---~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (171) T 1qjp_A 2 PKDNTWYTGAKLGWSQYHDTGLINNNGPTHENKLGAGAFGGYQVNPY---VGFEMGYDWLGRMPYKGSVENGAYKAQGVQ 78 (171) T ss_dssp CCTTEEEEEEEEEEEC-------------CCCEEEEEEEEEEEEETT---EEEEEEEEEEEECCC-------CEEEEEEE T ss_pred CCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCC---EEEEEEEEECCCCCCCCCCCCCCEEEEEEE T ss_conf 86797999998622995165332677631589738999999991587---899999996585320134544404878899 Q ss_pred EEEEEEEEECCCEEEEEEEEEEEEEEEECCC-CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC------CCC Q ss_conf 9989754312767789885447764443134-555677520479973466100488679999999975056------556 Q gi|254780598|r 120 LRIRGGYEVSDSLLLYATVGPDVAQKYETGK-AGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK------VEG 192 (205) Q Consensus 120 ~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~-~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~------~~~ 192 (205) +..+..+++.++++||+++|+++.+.+.+.. ....+++..++.+|+|++| .|+++|++++||||..+.+ .+. T Consensus 79 ~~~~~~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y-~l~~~~~i~~e~~~~~~~~~~~~~~~~~ 157 (171) T 1qjp_A 79 LTAKLGYPITDDLDIYTRLGGMVWRADTYSNVYGKNHDTGVSPVFAGGVEY-AITPEIATRLEYQWTNNIGDAHTIGTRP 157 (171) T ss_dssp EEEEEEEESSSSEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEE-EEETTEEEEEEEEEEC------------ T ss_pred EEEEEEECCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCCCC T ss_conf 999999814776147678636899621100246514467432588827999-9359979999999997258765544111 Q ss_pred CCEEEEEEEEEEC Q ss_conf 6226999998539 Q gi|254780598|r 193 FYNTISLGVGMKF 205 (205) Q Consensus 193 ~~~~~~~G~~ykF 205 (205) +.+.+.+|++||| T Consensus 158 ~~~~~~~G~~y~F 170 (171) T 1qjp_A 158 DNGMLSLGVSYRF 170 (171) T ss_dssp --CEEEEEEEEEC T ss_pred CCCEEEEEEEEEC T ss_conf 2458999999988 No 3 >>1orm_A Outer membrane protein X; OMPX, trosy, DHPC, detergents, lipids, micelles; NMR {Escherichia coli} (A:) Probab=99.85 E-value=2.6e-24 Score=142.35 Aligned_cols=132 Identities=20% Similarity=0.240 Sum_probs=112.8 Q ss_pred CCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCC-CCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECC Q ss_conf 77776026899854640483799845101321555666-62122321489998975431276778988544776444313 Q gi|254780598|r 71 EAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLAD-NIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETG 149 (205) Q Consensus 71 ~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~-~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~ 149 (205) ...++...++++||++|+.++++++|+.+.+.+..... .......+...+.++..|++++++.||+++|+++++.+.+. T Consensus 15 ~~~~~~~~g~~~gy~~~f~~~~~~~E~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Y~~~G~~~~~~~~~~ 94 (148) T 1orm_A 15 QGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTE 94 (148) T ss_dssp TTTCCCCCCCCCCBCCCSSSCSCCCCBCCCCCCCCCCSSSCCSCCSCCCBCCBCCCCCCTTTCCCCCCEECBCCSCSCCS T ss_pred CCCCCCCCEEEEEECEECCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECC T ss_conf 68788410699996989588169999999954466730346222212899998888960786469999867789844213 Q ss_pred CC-CCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC Q ss_conf 45-556775204799734661004886799999999750565566226999998539 Q gi|254780598|r 150 KA-GEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205) Q Consensus 150 ~~-~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205) .. .+.+++.+++.+|+|+|| .|+|+|++|+||||.++++.+ .+++++|++||| T Consensus 95 ~~~~~~~~~~~~~~~g~G~~y-~l~~~~~~~~ey~~~~~~d~~--~~~~~~Gv~y~F 148 (148) T 1orm_A 95 YPTYKNDTSDYGFSYGAGLQF-NPMENVALDFSYEQSRIRSVD--VGTWIAGVGYRF 148 (148) T ss_dssp SSSCCCCCCCCCCEECCCCCC-CCSSSCBCCCCCCCCCSSSCC--CCCCCCCCBCCC T ss_pred CCCCCCCCCEEEEEEECCEEE-ECCCCEEEEEEEEEEECCCCE--EEEEEEEEEEEC T ss_conf 776445654043888431799-727887999999997469951--206999999989 No 4 >>2f1v_A Outer membrane protein W; outer membrane protein beta barrel; 2.70A {Escherichia coli K12} PDB: 2f1t_A (A:) Probab=99.85 E-value=4.3e-20 Score=120.66 Aligned_cols=150 Identities=13% Similarity=0.036 Sum_probs=105.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCC-----------CCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCC---CCCCC---- Q ss_conf 154210001223333446677-----------777602689985464048379984510132155566---66212---- Q gi|254780598|r 51 HDFNGPYAGLSALYNGSFGEE-----------AHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLA---DNIHS---- 112 (205) Q Consensus 51 ~~w~G~y~g~~~g~~~~~~~~-----------~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~---~~~~~---- 112 (205) ++|+++|+++++|+.....+. .++++.+++.+||+++.. +.+|+++.+...... ..... T Consensus 1 ~~~~g~Yig~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gy~~~~~---~~ve~~~~~~~~~~~~~~~~~~~~~~~ 77 (197) T 2f1v_A 1 HEAGEFFMRAGSATVRPTEGAGGTLGSLGGFSVTNNTQLGLTFTYMATDN---IGVELLAATPFRHKIGTRATGDIATVH 77 (197) T ss_dssp -CTTCEEEEEEEEEEECCCC---------CCEECCEEEEEEEEEEESSSS---EEEEEEEESCEEEEEEETTTEEEEEEE T ss_pred CCCCCEEEEECEEEECCCCCCCCCCCCCCCEEECCCEEEEEEEEEEEECC---CEEEEEEEEEEEEEECCCCCCCCCCEE T ss_conf 97778899946699886467886436766348678748868999995067---215667656100010124777522045 Q ss_pred CCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCC---------CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEE Q ss_conf 23214899989754312767789885447764443134---------555677520479973466100488679999999 Q gi|254780598|r 113 LHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGK---------AGEITPIAIGGTAGVGVEVGGLSESLVARLEYR 183 (205) Q Consensus 113 ~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~---------~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~ 183 (205) ........+-+... ..+++.||+.+|+.+.+.+.+.. ....+++.+++.+|+|++| .|+++|++++||| T Consensus 78 ~~~~~~~~~y~~~~-~~~~~~py~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y-~l~~~~~l~~eyr 155 (197) T 2f1v_A 78 HLPPTLMAQWYFGD-ASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDY-LINRDWLVNMSVW 155 (197) T ss_dssp EECCEEEEEEECSC-TTCSEEEEEEEEEEEEEEEEEEECHHHHHTTEEEEEECCEEEEEEEEEEEE-ECSSSEEEEEEEE T ss_pred EECCEEEEEEEECC-CCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEE-ECCCCEEEEEEEE T ss_conf 50424889998617-777588999732177899600015677654221244566383899734899-9079839999999 Q ss_pred EEECCC--------------CCCCCEEEEEEEEEEC Q ss_conf 975056--------------5566226999998539 Q gi|254780598|r 184 ASKYSK--------------VEGFYNTISLGVGMKF 205 (205) Q Consensus 184 y~df~~--------------~~~~~~~~~~G~~ykF 205 (205) |.++.+ ++.+.+.+++|+.||| T Consensus 156 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Y~F 191 (197) T 2f1v_A 156 YMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF 191 (197) T ss_dssp EECCEEEEEEEESSCCCCEEEECCCEEEEEEEEEEE T ss_pred EEECCCCEEEECCCCCCCEEEEECCEEEEEEEEEEE T ss_conf 997455157842886311048727138999999996 No 5 >>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae} (A:) Probab=99.85 E-value=2.6e-19 Score=116.66 Aligned_cols=152 Identities=22% Similarity=0.286 Sum_probs=116.8 Q ss_pred CCCCCCCCCCCCCCCCCCCC-------------CCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCC---C Q ss_conf 11542100012233334466-------------7777760268998546404837998451013215556666212---2 Q gi|254780598|r 50 RHDFNGPYAGLSALYNGSFG-------------EEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHS---L 113 (205) Q Consensus 50 ~~~w~G~y~g~~~g~~~~~~-------------~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~---~ 113 (205) ...++++|++..+|+..... ...++.+..|+.+||+++.. +++|+++.+.+......... . T Consensus 13 ~~~~~~~yig~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gY~~~~~---~~ve~~~~~~~~~~~~~~~~~~~~ 89 (216) T 2k0l_A 13 APKDNTWYAGGKLGWSQYHDTGFYGNGFQNNNGPTRNDQLGAGAFGGYQVNPY---LGFEMGYDWLGRMAYKGSVDNGAF 89 (216) T ss_dssp CSCCCCEEEEEEEECSCCCCSCCCCCSCCCSCCCSCCCCCEEEEEEEEEEETT---EEEEEEEEECCCCCCCCSSCCCSS T ss_pred CCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCC---CCEEEEEEECCCCCCCCCCCCCCE T ss_conf 78779899999982188606643256654566410378668999999785144---434861465042012222457626 Q ss_pred CCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCC------CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEC Q ss_conf 3214899989754312767789885447764443134------5556775204799734661004886799999999750 Q gi|254780598|r 114 HGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGK------AGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKY 187 (205) Q Consensus 114 ~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~------~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df 187 (205) ......+.++..|.+++++.+|+.+|+.+.+.+.+.. ....+++..++.+|+|++| .|+++|++++||||..+ T Consensus 90 ~~~~~~~~~~y~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y-~l~~~~~l~~~~~y~~~ 168 (216) T 2k0l_A 90 KAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADSKGNYASTGVSRSEHDTGVSPVFAGGVEW-AVTRDIATRLEYQWVNN 168 (216) T ss_dssp CCCEEEEEEEEEEESSSSEEEEEEEEEEEEECCCCCSCCCSSSCCCCCCEEEEEEEEEEEEE-ECSSSCEEEEEESSCSS T ss_pred EEEEEEEEEEEEEEEECCCEEEEEEEEEEEEECCEEECCCCCCCCCCCCCCCCCEECCEEEE-EECCCEEEEEEEEEEEC T ss_conf 88878899999986202411777744789860111201457632113456303135123799-83699799999999953 Q ss_pred CC------CCCCCEEEEEEEEEEC Q ss_conf 56------5566226999998539 Q gi|254780598|r 188 SK------VEGFYNTISLGVGMKF 205 (205) Q Consensus 188 ~~------~~~~~~~~~~G~~ykF 205 (205) .+ .+.+.+.+++|++||| T Consensus 169 ~~~~~~~~~~~~~~~~~~Gl~Y~F 192 (216) T 2k0l_A 169 IGDAGTVGTRPDNGMLSLGVSYRF 192 (216) T ss_dssp CCCCSCCCCSSCSCCCEEEEEEEC T ss_pred CCCCCCCCCCCCCCEEEEEEEEEC T ss_conf 686555553233678999999999 No 6 >>2jmm_A Outer membrane protein A; NMR {Escherichia coli} (A:) Probab=99.84 E-value=1e-19 Score=118.74 Aligned_cols=142 Identities=18% Similarity=0.203 Sum_probs=114.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCE Q ss_conf 42100012233334466777776026899854640483799845101321555666621223214899989754312767 Q gi|254780598|r 53 FNGPYAGLSALYNGSFGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDSL 132 (205) Q Consensus 53 w~G~y~g~~~g~~~~~~~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~~ 132 (205) ..++|+|+++|+...+ ++++...++.+||++... +++|+.+.+......+ . ..+...+.++.-+++.+++ T Consensus 4 ~~~~yig~~~g~~~~~---~~~~~~~g~~~gy~~~~~---~~~e~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~ 73 (156) T 2jmm_A 4 DNTWYTGAKLGWSQYS---RENQLGAGAFGGYQVNPY---VGFEMGYDWLGRMPRK---A-QGVQLTAKLGYPKLGTDDL 73 (156) T ss_dssp SSEEEEEEEEEEETTC---CSSCCEEEEEEEEECSSS---EEEEEEEEEECSSSSC---E-EEEEEEEEEEECTTCTTTC T ss_pred CCCEEEEEECCCEEEC---CCCCCEEEEEEEEEECCC---EEEEEEEEECCCCCEE---E-ECCEEEEEEEEEECCCCCE T ss_conf 7968797871212143---789858789998870787---8999978834666415---4-2321546789997036854 Q ss_pred EEEEEEEEEEEEEEECCC----CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEC-CCCCCCCEEEEEEEEEEC Q ss_conf 789885447764443134----5556775204799734661004886799999999750-565566226999998539 Q gi|254780598|r 133 LLYATVGPDVAQKYETGK----AGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKY-SKVEGFYNTISLGVGMKF 205 (205) Q Consensus 133 l~Y~~~G~a~~~~~~~~~----~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df-~~~~~~~~~~~~G~~ykF 205 (205) .||+++|+.+.+.+.+.. ....+++.+++.+|+|++| .|+++|++++||||... .+.+.+.+.+++|++||| T Consensus 74 ~~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y-~l~~~~~l~~e~~~~~~~~d~~~~~~~~~~Gl~Y~F 150 (156) T 2jmm_A 74 DIYTRLGGMVWRADTSDKDGNGYISAAEASVSPVFAGGVEY-VIRRRITPEIATRLEYQWTNNASDNGMLSLGVSYRF 150 (156) T ss_dssp EEEEEEEEEEESSBCCCCCSSSCCCCCBCCCCEEEEEEEEE-ECSSSCSSSEEEEEEEEEESSSSCEEEEEEEEEEES T ss_pred EEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEE-EECCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEC T ss_conf 29898314699834432036774333667628779989999-864264734379999998268887777999899998 No 7 >>2f1c_X OMPG, outer membrane protein G; beta barrel; HET: C8E; 2.30A {Escherichia coli K12} PDB: 2jqy_A 2iwv_A* 2iww_A* (X:) Probab=99.14 E-value=6.7e-09 Score=63.15 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=41.1 Q ss_pred CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC---CCCCCEEEEEEEEEEC Q ss_conf 677520479973466100488679999999975056---5566226999998539 Q gi|254780598|r 154 ITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK---VEGFYNTISLGVGMKF 205 (205) Q Consensus 154 ~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~---~~~~~~~~~~G~~ykF 205 (205) ..+.+..+.+++|+|| .++++|.+|+||+|.+-.. ...+.+.+++|++||| T Consensus 227 ~~~~~d~~~~~~G~ey-~~~~~~~lr~gy~y~~~~~~~~~~~~~~~~~lG~~y~f 280 (286) T 2f1c_X 227 EREGHDFNRVGLFYGY-DFQNGLSVSLEYAFEWQDHDEGDSDKFHYAGVGVNYSF 280 (286) T ss_dssp -----CCEEEEEEEEE-ECSSSEEEEEEEEEEECC------CCEEEEEEEEEEEE T ss_pred EECCCCCEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEE T ss_conf 1405772499999963-40796699999999972554788857894788678998 No 8 >>1uyn_X NALP; autotransporter, translocator domain, membrane protein, outer membrane, beta-domain, beta-barrel; HET: CXE; 2.6A {Neisseria meningitidis} (X:) Probab=98.86 E-value=2.1e-07 Score=55.46 Aligned_cols=128 Identities=21% Similarity=0.218 Sum_probs=83.1 Q ss_pred CCEEEEEEEEEEECC-CEEEEEEEEEEECCCCCCC--------CCCC----CCCEEEEEEEEEEEEECCCEEEEEEEEEE Q ss_conf 602689985464048-3799845101321555666--------6212----23214899989754312767789885447 Q gi|254780598|r 75 NAGGSIFAGYNVEDS-CIMYGVEGDVRYTVPVLAD--------NIHS----LHGIGGSLRIRGGYEVSDSLLLYATVGPD 141 (205) Q Consensus 75 ~~~~G~~~GYn~q~~-~~V~G~e~d~~~~~~~~~~--------~~~~----~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a 141 (205) .....+.+||+|+.+ ++.+...+.+.+.....+. .... .......+..|+.+.+...+.++..+++- T Consensus 154 ~~~~~~~~gy~~~~~~~~~l~P~~~l~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 233 (308) T 1uyn_X 154 LMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWSGNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVE 233 (308) T ss_dssp EEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESCTTCCEECCEEEEEEEEEEEEEEEEECSSSEEEEEEEEEE T ss_pred EEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCEEEECCCEEEEECCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEE T ss_conf 79999999899982696599999875777862455075077416886256502666876899975215516798998999 Q ss_pred EEEEEEC--------------CCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC Q ss_conf 7644431--------------345556775204799734661004886799999999750565566226999998539 Q gi|254780598|r 142 VAQKYET--------------GKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205) Q Consensus 142 ~~~~~~~--------------~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205) ..-...+ ......+..+....+++|+|+ .++++|++.++|.+.-=.+. ..+.+.+|+.||| T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~~~~~~~~~--~~~~~~~gl~~~F 308 (308) T 1uyn_X 234 RDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADV-EFGNGWNGLARYSYAGSKQY--GNHSGRVGVGYRF 308 (308) T ss_dssp EESSCCCCCCCC-----------------CCEEEEEEEEEEE-EEETTEEEEEEEEEEEETTE--EEEEEEEEEEEEC T ss_pred EECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEE-EECCCEEEEEEEEEEECCCC--CEEEEEEEEEEEC T ss_conf 970689841699996278751577435788746999996999-98799899999999977785--1189999999989 No 9 >>2qom_A Serine protease ESPP; outer membrane protein, beta-barrel, beta-domain, autotransporter, hydrolase, plasmid, secreted, transmembrane; 2.66A {Escherichia coli O157} (A:) Probab=98.80 E-value=3e-07 Score=54.67 Aligned_cols=150 Identities=15% Similarity=0.124 Sum_probs=94.7 Q ss_pred CCCCCCCCCCCCCCCCC------------CCCCCCEEEEEEEEEEECC-CEEEEEEEEEEECCCCCCC-----C---CCC Q ss_conf 21000122333344667------------7777602689985464048-3799845101321555666-----6---212 Q gi|254780598|r 54 NGPYAGLSALYNGSFGE------------EAHHNAGGSIFAGYNVEDS-CIMYGVEGDVRYTVPVLAD-----N---IHS 112 (205) Q Consensus 54 ~G~y~g~~~g~~~~~~~------------~~~~~~~~G~~~GYn~q~~-~~V~G~e~d~~~~~~~~~~-----~---~~~ 112 (205) .++|+...++++....+ .....+...+.+||++... .+.+-..+.+.|.....+. . ..+ T Consensus 92 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~l~P~~~l~y~~~~~~~~~e~~~~~~l~~ 171 (285) T 2qom_A 92 SGAYIDLIGKYVHHDNEYTATFAGLGTRDYSTHSWYAGAEAGYRYHVTEDAWIEPQAELVYGSVSGKQFAWKDQGMHLSM 171 (285) T ss_dssp TSEEEEEEEEEEEEEEEEEC---CCCCEEEEEEEEEEEEEEEECEESSSSEEEEEEEEEEEEEEEEEEC--------CCC T ss_pred CCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCCCCCCCCCCCEE T ss_conf 65030044677886330143026643222233218874672167980367178678999999996477323577433133 Q ss_pred ----CCCEEEEEEEEEEEEECC---CEEEEEEEEEEEEEEEECC--------CCCCCCCCCEEEEEEEEEEEECCCCCEE Q ss_conf ----232148999897543127---6778988544776444313--------4555677520479973466100488679 Q gi|254780598|r 113 ----LHGIGGSLRIRGGYEVSD---SLLLYATVGPDVAQKYETG--------KAGEITPIAIGGTAGVGVEVGGLSESLV 177 (205) Q Consensus 113 ----~~~~~~~~~~r~Gy~~~~---~~l~Y~~~G~a~~~~~~~~--------~~~~~~~~~~g~~~G~Gvey~~it~~~~ 177 (205) ...+...+.+|+.+.+.. .+.+|+.+++...-..... .....+..+....+++|+++ .++++|. T Consensus 172 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~ 250 (285) T 2qom_A 172 KDKDYNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLLANGETVLRDASGEKRIKGEKDSRMLMSVGLNA-EIRDNVR 250 (285) T ss_dssp EEEEEEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEEETCTTBCCCSSSSCCSSSSEEEEEEEEEEEEE-EETTTEE T ss_pred CCCCEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEECCCCCEEEEECCCCCEEECCCCCCEEEEEEEEEE-EECCCEE T ss_conf 046400688875435301130688079999999999721788528971345413503688867999998999-9899999 Q ss_pred EEEEEEEEECCCCCCCCEEEEEEEEEEC Q ss_conf 9999999750565566226999998539 Q gi|254780598|r 178 ARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205) Q Consensus 178 ~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205) +.++|.+.-- ..+...+.+++|+.|+| T Consensus 251 ~~~~~~~~~~-~~~~~~~~~~lgl~y~F 277 (285) T 2qom_A 251 FGLEFEKSAF-GKYNVDNAVNANFRYSF 277 (285) T ss_dssp ECEEEEEEES-SSSEEEEEEEECCEEEE T ss_pred EEEEEEEEEC-CCCCEEEEEEEEEEEEE T ss_conf 9999999975-88844079999999998 No 10 >>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell outer membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa} (X:322-632) Probab=98.58 E-value=6.5e-06 Score=47.83 Aligned_cols=128 Identities=16% Similarity=0.130 Sum_probs=77.7 Q ss_pred CCEEEEEEEEEEEC---CCEEEEEEEEEEECCCCCCC---------CCCCCCCE----EEEEEEEEEEEECCCEEEEEEE Q ss_conf 60268998546404---83799845101321555666---------62122321----4899989754312767789885 Q gi|254780598|r 75 NAGGSIFAGYNVED---SCIMYGVEGDVRYTVPVLAD---------NIHSLHGI----GGSLRIRGGYEVSDSLLLYATV 138 (205) Q Consensus 75 ~~~~G~~~GYn~q~---~~~V~G~e~d~~~~~~~~~~---------~~~~~~~~----~~~~~~r~Gy~~~~~~l~Y~~~ 138 (205) .....+.+||++.+ +++.+-.++.+.|.....+. ........ ...+..|+.+.+...+.+++.+ T Consensus 154 ~~~~~~~~g~~~~~~~~~~~~i~P~~~l~~~~~~~~~~~E~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 233 (311) T 3kvn_X 154 LWAFSARLGYDIAQQADSPWHLSPFVSADYARVEVDGYSEKGASATALDYDDQKRSSKRLGAGLQGKYAFGSDTQLFAEY 233 (311) T ss_dssp EEEEEEEEEECSCSCTTCSEEEEEEEEEEEEEEEECCCBCSSCCTTCEEECCEEEEEEEEEEEEEEEEESSSSEEEEEEE T ss_pred EEEEEEEECEEEECCCCCCEEEEEEEEEEEEEEECCCEEECCCCCCCEEECCCCCCEEEEEEEEEEEEECCCCEEEEEEE T ss_conf 99999993567502566868999999999999853753541787200698166420899999999999618826899999 Q ss_pred EEEEEEEEEC--------C------CCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEE Q ss_conf 4477644431--------3------4555677520479973466100488679999999975056556622699999853 Q gi|254780598|r 139 GPDVAQKYET--------G------KAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMK 204 (205) Q Consensus 139 G~a~~~~~~~--------~------~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~yk 204 (205) ++...-.... . .....+..+....+++|+++ .+++++.+.++|.+..-.+.+ .+.+.+|+.|+ T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~ 310 (311) T 3kvn_X 234 AHEREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQ-KLAPELSLRGGYNWRKGEDDT--QQSVSLALSLD 310 (311) T ss_dssp EEEEESCCCCCEEEEEETTCTTCCEEEECCCCCSEEEEEEEEEEE-EEETTEEEEEEEEEEEETTEE--EEEEEEEEEEE T ss_pred EEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEE-EECCCEEEEEEEEEEECCCCE--EEEEEEEEEEE T ss_conf 998220589731799997378853788445578868999999999-988988999999999888968--99999999998 Q ss_pred C Q ss_conf 9 Q gi|254780598|r 205 F 205 (205) Q Consensus 205 F 205 (205) | T Consensus 311 F 311 (311) T 3kvn_X 311 F 311 (311) T ss_dssp C T ss_pred C T ss_conf 9 No 11 >>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} (A:) Probab=98.06 E-value=0.00039 Score=38.67 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=37.3 Q ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC Q ss_conf 75204799734661004886799999999750565566226999998539 Q gi|254780598|r 156 PIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205) Q Consensus 156 ~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205) ....-..+.+|++| .+++++.+-+||.|.+..+.+ +.+.|||-|+| T Consensus 256 ~~~~~~~~~~g~~Y-~lsk~~~~y~~~~~~~~~~~~---~~~~vG~r~~F 301 (301) T 2por_A 256 TIDDVTYYGLGASY-DLGGGASIVGGIADNDLPNSD---MVADLGVKFKF 301 (301) T ss_dssp TTEEEEEEEEEEEE-EEETTEEEEEEEEEECSSSCC---CEEEEEEEEEC T ss_pred CCCCEEEEEEEEEE-ECCCCEEEEEEEEEEECCCCC---EEEEEEEEEEC T ss_conf 88862699999999-889997999999999668997---37999869989 No 12 >>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} (A:) Probab=98.05 E-value=0.00041 Score=38.56 Aligned_cols=80 Identities=11% Similarity=0.164 Sum_probs=51.6 Q ss_pred EEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC----CCCE Q ss_conf 998975431276778988544776444313455567752047997346610048867999999997505655----6622 Q gi|254780598|r 120 LRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE----GFYN 195 (205) Q Consensus 120 ~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~----~~~~ 195 (205) ...-+.|.+++.+.+++ ++...+.+..... .....-..+.+|++| .+++++.+.+||.|.+..+.. .+.+ T Consensus 247 ~~~~a~y~~~~~~~~~~--~y~~~~~~~~~~~---~~~~~~~~~~~g~~Y-~~sk~~~~ya~~~~~~~~~~~~~~~~~~~ 320 (330) T 1pho_A 247 FEAVAQYQFDFGLRPSL--GYVLSKGKDIEGI---GDEDLVNYIDVGATY-YFNKNMSAFVDYKINQLDSDNKLNINNDD 320 (330) T ss_dssp EEEEEEECCSSSEEEEE--EEEEEEEESBTTT---BCCEEEEEEEEEEEE-ESSSSEEEEEEEEEECCCSSCTTCCCCCC T ss_pred EEEEEEEEECCCEEEEE--EEEEEECCCCCCC---CCCCCEEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCCCCC T ss_conf 99999999545517899--9999971345677---887615999999999-90799899999999822477667766688 Q ss_pred EEEEEEEEEC Q ss_conf 6999998539 Q gi|254780598|r 196 TISLGVGMKF 205 (205) Q Consensus 196 ~~~~G~~ykF 205 (205) .+.+||-|+| T Consensus 321 ~~~vG~r~~F 330 (330) T 1pho_A 321 IVAVGMTYQF 330 (330) T ss_dssp EEEEEEEEEC T ss_pred EEEEEEEEEC T ss_conf 9999999989 No 13 >>3prn_A Porin; integral membrane protein, pore eyelet mutant; HET: C8E; 1.90A {Rhodopseudomonas blastica} (A:) Probab=97.93 E-value=0.00053 Score=37.99 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=32.2 Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC Q ss_conf 99734661004886799999999750565566226999998539 Q gi|254780598|r 162 TAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205) Q Consensus 162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205) .+.+|+|| .+++++.+-+||.+.+.. -+.+.|||-|+| T Consensus 252 ~~~~g~~Y-~l~k~~~~yae~~~~~~~-----~~~~~vG~r~~F 289 (289) T 3prn_A 252 AYGIGADY-QFAEGVKVSGSVQSGFAN-----ETVADVGVRFDF 289 (289) T ss_dssp EEEEEEEE-EEETTEEEEEEEEECTTC-----CEEEEEEEEEEC T ss_pred EEEEEEEE-ECCCCEEEEEEEEEEECC-----CCEEEEEEEEEC T ss_conf 89999999-848985999999997089-----825705757769 No 14 >>2j1n_A Outer membrane protein C; beta-barrel, ION transport, non-specific porin, general porin, osmoporin, transmembrane transport; HET: D12; 2.0A {Escherichia coli} PDB: 2j4u_P 2zle_D 2ixx_A* 2ixw_A* 1osm_A* (A:) Probab=97.92 E-value=0.00072 Score=37.29 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=37.7 Q ss_pred EEEEEEEEEEEECCCCCEEEEEEEEEEECCCC-------CCCCEEEEEEEEEEC Q ss_conf 04799734661004886799999999750565-------566226999998539 Q gi|254780598|r 159 IGGTAGVGVEVGGLSESLVARLEYRASKYSKV-------EGFYNTISLGVGMKF 205 (205) Q Consensus 159 ~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~-------~~~~~~~~~G~~ykF 205 (205) .--.+-+|++| .+++++.+.+||.|.+..+. ..+.+.+.|||-|+| T Consensus 294 ~~~~~~~g~~Y-~~sk~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~vGlr~~F 346 (346) T 2j1n_A 294 ILKYVDVGATY-YFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF 346 (346) T ss_dssp EEEEEEEEEEE-ESSSSEEEEEEEEEECCCCCHHHHHHTCCCSCEEEEEEEEEC T ss_pred CEEEEEEEEEE-ECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEC T ss_conf 16999999999-816998999999985356642233467766778999999989 No 15 >>1i78_A Protease VII; integral outer membrane protein, beta barrel, hydrolase; HET: BOG; 2.60A {Escherichia coli K12} (A:) Probab=97.92 E-value=0.00073 Score=37.29 Aligned_cols=84 Identities=11% Similarity=0.072 Sum_probs=52.2 Q ss_pred EEEEEEEEECCCEEEEEEEEE-EEEEEEECC---------CCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC Q ss_conf 998975431276778988544-776444313---------4555677520479973466100488679999999975056 Q gi|254780598|r 120 LRIRGGYEVSDSLLLYATVGP-DVAQKYETG---------KAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK 189 (205) Q Consensus 120 ~~~r~Gy~~~~~~l~Y~~~G~-a~~~~~~~~---------~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~ 189 (205) +.+..-|.+ +++-+.+.+=+ .+.+.+... ...+..+...++.+.+-+.| .+||+|++.+|-+|..+.. T Consensus 181 iGl~g~y~~-~~~~l~~~~~ys~~v~~~~~D~H~lR~~~~~~~~~~~~~~g~~l~~~~~Y-~vt~~~si~v~g~y~~~~~ 258 (297) T 1i78_A 181 IGLTGSYRY-EDFELGGTFKYSGWVESSDNDEHYDPKGRITYRSKVKDQNYYSVAVNAGY-YVTPNAKVYVEGAWNRVTN 258 (297) T ss_dssp EEEEEEEEE-TTEEEEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEEEE-EEETTEEEEEEEEEEEEEE T ss_pred ECCCCCEEE-EEEECCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCE-EECCCCEEEEEEHHHHHCC T ss_conf 312242253-30031635764113563777434588762676301145743789960656-8768844998401232003 Q ss_pred C-----------------------CCCCEEEEEEEEEEC Q ss_conf 5-----------------------566226999998539 Q gi|254780598|r 190 V-----------------------EGFYNTISLGVGMKF 205 (205) Q Consensus 190 ~-----------------------~~~~~~~~~G~~ykF 205 (205) - +...-++++|+-||| T Consensus 259 ~~g~t~~~~~~~g~~~~~~~~ag~~~~~~~~s~Gl~y~F 297 (297) T 1i78_A 259 KKGNTSLYDHNNNTSDYSKNGAGIENYNFITTAGLKYTF 297 (297) T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEEEEEC T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCEEECC T ss_conf 678722031679832013477763222416621312229 No 16 >>2zfg_A Outer membrane protein F; OMPF porin, ordered waters, ION transport, phage recognition, transmembrane, transport; HET: C8E; 1.59A {Escherichia coli} (A:) Probab=97.79 E-value=0.0012 Score=36.11 Aligned_cols=77 Identities=12% Similarity=0.156 Sum_probs=48.3 Q ss_pred EEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC----CCCCEEEE Q ss_conf 97543127677898854477644431345556775204799734661004886799999999750565----56622699 Q gi|254780598|r 123 RGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV----EGFYNTIS 198 (205) Q Consensus 123 r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~----~~~~~~~~ 198 (205) -+.|.+++.+.+.+. +.+.+.+..... .....-..+.+|++| .+++++.+.+||.|.+..+. +.+.+.+. T Consensus 260 ~~~y~~~~~~~~~~~--y~~~~~~~~~~~---~~~~~~~~~~vg~~Y-~lsk~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 333 (340) T 2zfg_A 260 VAQYQFDFGLRPSIA--YTKSKAKDVEGI---GDVDLVNYFEVGATY-YFNKNMSTYVDYIINQIDSDNKLGVGSDDTVA 333 (340) T ss_dssp EEEECCTTSEEEEEE--EEEEEEEEETTT---EEEEEEEEEEEEEEE-EEETTEEEEEEEEEECCCTTCTTCCCCBCEEE T ss_pred EEEEEECCCEEEEEE--EEEEECCCCCCC---CCCCCEEEEEEEEEE-EECCCEEEEEEEEEECCCCCCCCCCCCCCEEE T ss_conf 999984677378999--999960355677---776623899999999-91699899999999523577667776687999 Q ss_pred EEEEEEC Q ss_conf 9998539 Q gi|254780598|r 199 LGVGMKF 205 (205) Q Consensus 199 ~G~~ykF 205 (205) +||-|+| T Consensus 334 ~G~r~~F 340 (340) T 2zfg_A 334 VGIVYQF 340 (340) T ss_dssp EEEEEEC T ss_pred EEEEEEC T ss_conf 9999989 No 17 >>2erv_A Hypothetical protein PAER03002360; beta barrel, outer membrane, enzyme, hydrolase, lipopolysaccharide, membrane protein; HET: CXE; 2.00A {Pseudomonas aeruginosa} (A:) Probab=97.58 E-value=0.0027 Score=34.33 Aligned_cols=114 Identities=12% Similarity=-0.032 Sum_probs=66.0 Q ss_pred CEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEE Q ss_conf 37998451013215556666212232148999897543127677898854477644431345556775204799734661 Q gi|254780598|r 90 CIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEV 169 (205) Q Consensus 90 ~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey 169 (205) .+-+-.+.++...-...+...........+...|..+.. .+.-+|..+|....-.........+-.+..-+...+|+.| T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~e~g~G~~~~~~~~~~~~~~G~~f~F~~~lglgy 112 (150) T 2erv_A 34 TGRLTGYWDAGYTYWEGGDEGAGKHSLSFAPVFVYEFAG-DSIKPFIEAGIGVAAFSGTRVGDQNLGSSLNFEDRIGAGL 112 (150) T ss_dssp TEEEEEEEEEEEEEECCCSSCSSEEEEEEEEEEEEEECC-SSEEEEEEEEEEEEEESSSEETTEECSCSEEEEEEEEEEE T ss_pred CCCEEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEECC-CCCCEEEEEEECEEEEECCCCCCCCCCCEEEEEEEEEEEE T ss_conf 853889987888883069966862078567899999469-9836799941044987042027987675498734278899 Q ss_pred ECCCCCEEEEEEEEEEEC---CCCCCCCEEEEEEEEEEC Q ss_conf 004886799999999750---565566226999998539 Q gi|254780598|r 170 GGLSESLVARLEYRASKY---SKVEGFYNTISLGVGMKF 205 (205) Q Consensus 170 ~~it~~~~~r~EY~y~df---~~~~~~~~~~~~G~~ykF 205 (205) .++++|.+.+-|+|..= .+....+|++.+.++|+| T Consensus 113 -~~~~~~~lgl~~~H~SNa~~~~~NpG~n~~~l~~g~~f 150 (150) T 2erv_A 113 -KFANGQSVGVRAIHYSNAGLKQPNDGIESYSLFYKIPI 150 (150) T ss_dssp -EETTSCEEEEEEEEEECTTSSTTCCCEEEEEEEEEEEC T ss_pred -EECCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCC T ss_conf -96799889999998505898989999206889996659 No 18 >>2f1c_X OMPG, outer membrane protein G; beta barrel; HET: C8E; 2.30A {Escherichia coli K12} PDB: 2jqy_A 2iwv_A* 2iww_A* (X:) Probab=97.44 E-value=0.0042 Score=33.38 Aligned_cols=110 Identities=9% Similarity=0.031 Sum_probs=70.7 Q ss_pred CCCCCCEEEEEEEEEEECC-CEEEEEEEEEEECCCCCC--CCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEE Q ss_conf 7777602689985464048-379984510132155566--6621223214899989754312767789885447764443 Q gi|254780598|r 71 EAHHNAGGSIFAGYNVEDS-CIMYGVEGDVRYTVPVLA--DNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYE 147 (205) Q Consensus 71 ~~~~~~~~G~~~GYn~q~~-~~V~G~e~d~~~~~~~~~--~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~ 147 (205) .........+...+.+... .+-+|+...+...+.+.. ............+.+-+.|.++|++.+.+.+.+.+.+.+. T Consensus 62 ~~~~~~~p~~~~~~~i~~~~~~g~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~d~lsig~~~~~~~~~~~~ 141 (286) T 2f1c_X 62 RGTWFDRPELEVHYQFLENDDFSFGLTGGFRNYGYHYVDEPGKDTANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFANDL 141 (286) T ss_dssp CCCEEECCEEEEEEEEEECSSEEEEEEEEEEEEEEECCSCSSCSEEEEEEEEEEEEEEEESSSSEEEEEEEEEEEEESSH T ss_pred CCCCCEEEEEEEEEEEECCCCEEEECCEEEEEEECCCCCCCCCCCCCCCEEEEEECEEEECCCCEEEEEEEEEEEECCCC T ss_conf 56401368999899986188738821249802531367885556444202776333089814775997147999972644 Q ss_pred CCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEE Q ss_conf 13455567752047997346610048867999999997 Q gi|254780598|r 148 TGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRAS 185 (205) Q Consensus 148 ~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~ 185 (205) ... +....++.+.+|+-| .++++|.+.+.|++. T Consensus 142 ~~~----~~~~~~~g~~~G~~y-~~~~~~~lg~~y~~~ 174 (286) T 2f1c_X 142 NTT----GYADTRVETETGLQY-TFNETVALRVNYYLE 174 (286) T ss_dssp HHH----CCCSEEEEEEEEEEE-ECSSSBEEEEEEEEE T ss_pred CCC----CCCCCEEEEECCEEE-EECCCCEEEEEEEEE T ss_conf 678----877623897247689-988985799999863 No 19 >>2jmm_A Outer membrane protein A; NMR {Escherichia coli} (A:) Probab=96.69 E-value=0.013 Score=30.92 Aligned_cols=88 Identities=10% Similarity=-0.028 Sum_probs=44.1 Q ss_pred CCCCEEEEEEEEEEECC-C--EEEEEEEEEEECCCCCC----CCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEE Q ss_conf 77602689985464048-3--79984510132155566----66212232148999897543127677898854477644 Q gi|254780598|r 73 HHNAGGSIFAGYNVEDS-C--IMYGVEGDVRYTVPVLA----DNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQK 145 (205) Q Consensus 73 ~~~~~~G~~~GYn~q~~-~--~V~G~e~d~~~~~~~~~----~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~ 145 (205) .+.....+.+.|++... + ..+++-..+...+.+.. ........+...+.+.+.|.+++++.+.+..-+..... T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y~l~~~~~l~~e~~~~~~~~ 133 (156) T 2jmm_A 54 AQGVQLTAKLGYPKLGTDDLDIYTRLGGMVWRADTSDKDGNGYISAAEASVSPVFAGGVEYVIRRRITPEIATRLEYQWT 133 (156) T ss_dssp EEEEEEEEEEEECTTCTTTCEEEEEEEEEEESSBCCCCCSSSCCCCCBCCCCEEEEEEEEEECSSSCSSSEEEEEEEEEE T ss_pred EECCEEEEEEEEEECCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEE T ss_conf 42321546789997036854298983146998344320367743336676287799899998642647343799999982 Q ss_pred EECCCCCCCCCCCEEEEEEEEEEE Q ss_conf 431345556775204799734661 Q gi|254780598|r 146 YETGKAGEITPIAIGGTAGVGVEV 169 (205) Q Consensus 146 ~~~~~~~~~~~~~~g~~~G~Gvey 169 (205) +. ...-..+.+|+.| T Consensus 134 d~---------~~~~~~~~~Gl~Y 148 (156) T 2jmm_A 134 NN---------ASDNGMLSLGVSY 148 (156) T ss_dssp SS---------SSCEEEEEEEEEE T ss_pred CC---------CCCCCEEEEEEEE T ss_conf 68---------8877779998999 No 20 >>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} (A:) Probab=96.42 E-value=0.03 Score=29.01 Aligned_cols=19 Identities=5% Similarity=-0.025 Sum_probs=8.2 Q ss_pred EEEEEEEEEEECCCEEEEE Q ss_conf 8999897543127677898 Q gi|254780598|r 118 GSLRIRGGYEVSDSLLLYA 136 (205) Q Consensus 118 ~~~~~r~Gy~~~~~~l~Y~ 136 (205) ..+.+-+.|.+++++.+.+ T Consensus 121 ~~~g~G~~y~l~~~~~i~~ 139 (171) T 1qjp_A 121 PVFAGGVEYAITPEIATRL 139 (171) T ss_dssp EEEEEEEEEEEETTEEEEE T ss_pred EEEEEEEEEEECCCEEEEE T ss_conf 5888279999359979999 No 21 >>2qom_A Serine protease ESPP; outer membrane protein, beta-barrel, beta-domain, autotransporter, hydrolase, plasmid, secreted, transmembrane; 2.66A {Escherichia coli O157} (A:) Probab=96.06 E-value=0.059 Score=27.47 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=52.5 Q ss_pred CCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCC----C-CCCCCCEEEEEEEEEEEEE--CCCEE--EEEEEEEEEE Q ss_conf 776026899854640483799845101321555666----6-2122321489998975431--27677--8988544776 Q gi|254780598|r 73 HHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLAD----N-IHSLHGIGGSLRIRGGYEV--SDSLL--LYATVGPDVA 143 (205) Q Consensus 73 ~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~----~-~~~~~~~~~~~~~r~Gy~~--~~~~l--~Y~~~G~a~~ 143 (205) .+....++++.|+++...++- .-+.+.+.+.+... + ...-..+...+..++||.+ ++.+. ||+.+-|... T Consensus 77 ~~~~~~g~Y~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~l~P~~~l~y~~~ 155 (285) T 2qom_A 77 TKSVGAGLYASAMFDSGAYID-LIGKYVHHDNEYTATFAGLGTRDYSTHSWYAGAEAGYRYHVTEDAWIEPQAELVYGSV 155 (285) T ss_dssp EEEEEEEEEEEEECTTSEEEE-EEEEEEEEEEEEEC---CCCCEEEEEEEEEEEEEEEECEESSSSEEEEEEEEEEEEEE T ss_pred EEEEEEEEEEEEECCCCCCEE-EEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEEE T ss_conf 344678999998517650300-4467788633014302664322223321887467216798036717867899999999 Q ss_pred EEEE---CCC-----CCCCCCCCEEEEEEEEEEEECCCC-----CEEEEEEEEEEE Q ss_conf 4443---134-----555677520479973466100488-----679999999975 Q gi|254780598|r 144 QKYE---TGK-----AGEITPIAIGGTAGVGVEVGGLSE-----SLVARLEYRASK 186 (205) Q Consensus 144 ~~~~---~~~-----~~~~~~~~~g~~~G~Gvey~~it~-----~~~~r~EY~y~d 186 (205) +.+. +.. ....+...+-..+|+-+++ .++. .+.+++.|+|.. T Consensus 156 ~~~~~~e~~~~~~l~~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~ 210 (285) T 2qom_A 156 SGKQFAWKDQGMHLSMKDKDYNPLIGRTGVDVGK-SFSGKDWKVTARAGLGYQFDL 210 (285) T ss_dssp EEEEC--------CCCEEEEEEEEEEEEEEEEEE-EEECSSEEEEEEEEEEEEEEE T ss_pred ECCCCCCCCCCCCCEECCCCEEEEEEEEEEEEEE-EEECCCEEEEEEEEEEEEEEC T ss_conf 6477323577433133046400688875435301-130688079999999999721 No 22 >>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae} (A:) Probab=96.02 E-value=0.045 Score=28.10 Aligned_cols=68 Identities=10% Similarity=-0.063 Sum_probs=38.7 Q ss_pred CCCEEEEEEEEEEECC-C--EEEEEEEEEEECCCCCC------CCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEE Q ss_conf 7602689985464048-3--79984510132155566------6621223214899989754312767789885447 Q gi|254780598|r 74 HNAGGSIFAGYNVEDS-C--IMYGVEGDVRYTVPVLA------DNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPD 141 (205) Q Consensus 74 ~~~~~G~~~GYn~q~~-~--~V~G~e~d~~~~~~~~~------~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a 141 (205) +.....+.++|.+... . ...++-..+.+...+.. ........+...+.+.+.|.+++++.+.+..-+. T Consensus 90 ~~~~~~~~~~y~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y~l~~~~~l~~~~~y~ 166 (216) T 2k0l_A 90 KAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADSKGNYASTGVSRSEHDTGVSPVFAGGVEWAVTRDIATRLEYQWV 166 (216) T ss_dssp CCCEEEEEEEEEEESSSSEEEEEEEEEEEEECCCCCSCCCSSSCCCCCCEEEEEEEEEEEEEECSSSCEEEEEESSC T ss_pred EEEEEEEEEEEEEEEECCCEEEEEEEEEEEEECCEEECCCCCCCCCCCCCCCCCEECCEEEEEECCCEEEEEEEEEE T ss_conf 88878899999986202411777744789860111201457632113456303135123799836997999999999 No 23 >>1uyn_X NALP; autotransporter, translocator domain, membrane protein, outer membrane, beta-domain, beta-barrel; HET: CXE; 2.6A {Neisseria meningitidis} (X:) Probab=96.00 E-value=0.063 Score=27.32 Aligned_cols=69 Identities=19% Similarity=0.138 Sum_probs=34.0 Q ss_pred EEEEEEEEEEEEEC--CCEE--EEEEEEEEEEEEEE---CCC---CCCCCCC--CEEEEEEEEEEEECCCCC--EEEEEE Q ss_conf 14899989754312--7677--89885447764443---134---5556775--204799734661004886--799999 Q gi|254780598|r 116 IGGSLRIRGGYEVS--DSLL--LYATVGPDVAQKYE---TGK---AGEITPI--AIGGTAGVGVEVGGLSES--LVARLE 181 (205) Q Consensus 116 ~~~~~~~r~Gy~~~--~~~l--~Y~~~G~a~~~~~~---~~~---~~~~~~~--~~g~~~G~Gvey~~it~~--~~~r~E 181 (205) ....+..++||++. +++. ||+.+.+.+.+.+. ++. ......+ .....+|+-+++ .+..+ +.++++ T Consensus 153 ~~~~~~~~~gy~~~~~~~~~l~P~~~l~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~ 231 (308) T 1uyn_X 153 TLMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWSGNSLTEGTLVGLAGLKLSQ-PLSDKAVLFATAG 231 (308) T ss_dssp EEEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESCTTCCEECCEEEEEEEEEEEEEEEE-ECSSSEEEEEEEE T ss_pred EEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCEEEECCCEEEEECCCCCEEEEEEEEEEEEE-ECCCEEEEEEEEE T ss_conf 179999999899982696599999875777862455075077416886256502666876899975-2155167989989 Q ss_pred EEEE Q ss_conf 9997 Q gi|254780598|r 182 YRAS 185 (205) Q Consensus 182 Y~y~ 185 (205) |+|. T Consensus 232 ~~~~ 235 (308) T 1uyn_X 232 VERD 235 (308) T ss_dssp EEEE T ss_pred EEEE T ss_conf 9997 No 24 >>2wjr_A Probable N-acetylneuraminic acid outer membrane channel protein NANC; cell membrane, ION transport, transmembrane, porin, transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A* (A:) Probab=95.81 E-value=0.077 Score=26.87 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=36.3 Q ss_pred CCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC-CC----CCEEEEEEEEEEC Q ss_conf 556775204799734661004886799999999750565-56----6226999998539 Q gi|254780598|r 152 GEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV-EG----FYNTISLGVGMKF 205 (205) Q Consensus 152 ~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~-~~----~~~~~~~G~~ykF 205 (205) ...+.....|..-+=+.| .+.++|.--+|+...+-... +. ....+||||.|-| T Consensus 157 ~~~~~k~~~~e~n~~~~Y-k~~~~w~PYvE~g~v~~~~~~~~~~~~~q~r~RvGv~Y~F 214 (214) T 2wjr_A 157 RYANHKKWATENAFVLQY-HMTPDITPYIEYDYLDRQGVYNGRDNLSENSYRIGVSFKL 214 (214) T ss_dssp CCTTSSSEEEEEEEEEEE-CSSSSEEEEEEEEECCSCEEETTEEEECCEEEEEEEEECC T ss_pred EEECCCCCEEEEEEEEEE-EECCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEC T ss_conf 641887741689999999-8589732369999841552017764542426999989759 No 25 >>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell outer membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa} (X:322-632) Probab=95.81 E-value=0.078 Score=26.86 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=17.7 Q ss_pred CCCEEEEEEEEEEECC-CEEEEEEEEEEECC Q ss_conf 7602689985464048-37998451013215 Q gi|254780598|r 74 HNAGGSIFAGYNVEDS-CIMYGVEGDVRYTV 103 (205) Q Consensus 74 ~~~~~G~~~GYn~q~~-~~V~G~e~d~~~~~ 103 (205) +....++.+|++.+.. ++.+|+-..+...+ T Consensus 59 ~~~~~g~~~G~d~~~~~~~~~G~~~~~~~~~ 89 (311) T 3kvn_X 59 DGNGYNLTLGGSYRIDEAWRAGVAAGFYRQK 89 (311) T ss_dssp EEEEEEEEEEEEEECSSSEEEEEEEEEEEEE T ss_pred CCCCCEEEEEEEEEECCCEEEEEEEEEEEEE T ss_conf 5315359999887877987999999974001 No 26 >>2o4v_A Porin P; outer membrane, phosphate, transport, channel, membrane protein; HET: C8E; 1.94A {Pseudomonas aeruginosa PAO1} (A:) Probab=95.44 E-value=0.11 Score=26.10 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=39.5 Q ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC-----CCCCEEEEEEEEEEC Q ss_conf 75204799734661004886799999999750565-----566226999998539 Q gi|254780598|r 156 PIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV-----EGFYNTISLGVGMKF 205 (205) Q Consensus 156 ~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~-----~~~~~~~~~G~~ykF 205 (205) ....+..+-+|+.| .+++|+.+++||.|.+..+. +-+.|.+++.+.|+| T Consensus 358 ~~~~~~~~~~g~~~-~~~~n~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~F 411 (411) T 2o4v_A 358 GDAKGKTHTLGVNW-YANEAVKVSANYVKAKTDKISNANGDDSGDGLVMRLQYVF 411 (411) T ss_dssp SCEEEEEEEEEEEE-ECSSSEEEEEEEEEEEEESBCCTTCCCEEEEEEEEEEEEC T ss_pred CCCEEEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEC T ss_conf 77606999999999-9808999999999986665666778886558999988889 No 27 >>2wjr_A Probable N-acetylneuraminic acid outer membrane channel protein NANC; cell membrane, ION transport, transmembrane, porin, transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A* (A:) Probab=95.33 E-value=0.12 Score=25.92 Aligned_cols=98 Identities=4% Similarity=-0.152 Sum_probs=53.1 Q ss_pred EEEEEEEEEECC-CEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCC Q ss_conf 689985464048-3799845101321555666621223214899989754312767789885447764443134555677 Q gi|254780598|r 78 GSIFAGYNVEDS-CIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITP 156 (205) Q Consensus 78 ~G~~~GYn~q~~-~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~ 156 (205) -.+.+.|.|++. ++.+-.-..+...... ....-..|++|.|.+.+.+-++--+-+.+...... ..+.+ T Consensus 54 ~E~~~~y~~kl~d~~~l~PG~~~~~~~~~----------~~ykPylk~~Y~f~~~~~~~~RYRy~~~~~~~~~~-~~~~~ 122 (214) T 2wjr_A 54 VQVEVNYAIKLDDQWTVRPGMLTHFSSNG----------TRYGPYVKLSWDATKDLNFGIRYRYDWKAYRQQDL-SGDMS 122 (214) T ss_dssp EEEEEEECEESSSSEEEEEEEEEEEETTE----------EEEEEEEEEEEEEETTEEEEEEEEEEEESSCEECT-TSCEE T ss_pred EEEEEEEEEECCCCEEEECCEEEEECCCC----------CEEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCC-CCCCC T ss_conf 69999999863888699345399966998----------57802799969976985799883132013655567-78766 Q ss_pred CCEEEEEEEEEEEECCCCCEEEEEEEEEEEC Q ss_conf 5204799734661004886799999999750 Q gi|254780598|r 157 IAIGGTAGVGVEVGGLSESLVARLEYRASKY 187 (205) Q Consensus 157 ~~~g~~~G~Gvey~~it~~~~~r~EY~y~df 187 (205) ......+-+.+-| .++++|.+..|+.|..- T Consensus 123 ~~~~~r~d~~~~Y-~~~~~~~~~y~~~y~~~ 152 (214) T 2wjr_A 123 RDNVHRWDGYVTY-HINSDFTFAWQTTLYSK 152 (214) T ss_dssp CCCEEEEEEEEEE-ECSSSEEEEEEEEEEEE T ss_pred CCCCEEEEEEEEE-EECCCEEEEEEEEEEEC T ss_conf 6751789789988-85456079987788852 No 28 >>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein; HET: BOG; 1.45A {Delftia acidovorans} (X:) Probab=94.87 E-value=0.16 Score=25.19 Aligned_cols=48 Identities=13% Similarity=0.041 Sum_probs=36.4 Q ss_pred CCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC-----------------CCCCEEEEEEEEEEC Q ss_conf 5204799734661004886799999999750565-----------------566226999998539 Q gi|254780598|r 157 IAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV-----------------EGFYNTISLGVGMKF 205 (205) Q Consensus 157 ~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~-----------------~~~~~~~~~G~~ykF 205 (205) ......+-+|++| .++++..+.+||.|.+-.+. ..+.+.+.+||-|+| T Consensus 268 ~~~~~~~~~g~~y-~l~k~~~~ya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Glr~~F 332 (332) T 2fgq_X 268 DSKAHQITLGYVH-NLSKRTALYGNLAFLKNKDASTLGLQAKGVYAGGVQAGESQTGVQVGIRHAF 332 (332) T ss_dssp TEEEEEEEEEEEE-ESSSSEEEEEEEEEEEECTTCCCCCCBTTTBCSCCCTTCEEEEEEEEEEEEC T ss_pred CCCCEEEEEEEEE-ECCCCCHHHHEEHHEECCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEEC T ss_conf 8972599999999-6466718733024121258774210111002478789987699999999989 No 29 >>2f1v_A Outer membrane protein W; outer membrane protein beta barrel; 2.70A {Escherichia coli K12} PDB: 2f1t_A (A:) Probab=94.76 E-value=0.15 Score=25.46 Aligned_cols=32 Identities=13% Similarity=0.026 Sum_probs=19.8 Q ss_pred CCCCEEEEEEEEEEEEECCCEEEEEEEEEEEE Q ss_conf 22321489998975431276778988544776 Q gi|254780598|r 112 SLHGIGGSLRIRGGYEVSDSLLLYATVGPDVA 143 (205) Q Consensus 112 ~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~ 143 (205) .+..+...+.+-+.|.+++++.+.+..-+... T Consensus 128 ~~~~~~~~~g~G~~y~l~~~~~l~~eyry~~~ 159 (197) T 2f1v_A 128 LKDSWGAAGQVGVDYLINRDWLVNMSVWYMDI 159 (197) T ss_dssp ECCEEEEEEEEEEEEECSSSEEEEEEEEEECC T ss_pred CCCCEEEEEECCEEEECCCCEEEEEEEEEEEC T ss_conf 56638389973489990798399999999974 No 30 >>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii} (A:) Probab=94.30 E-value=0.23 Score=24.45 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=10.1 Q ss_pred EEEEEEECCCCCEEEEEEEEEEE Q ss_conf 73466100488679999999975 Q gi|254780598|r 164 GVGVEVGGLSESLVARLEYRASK 186 (205) Q Consensus 164 G~Gvey~~it~~~~~r~EY~y~d 186 (205) -+++++ .++++|.+++.|.|.+ T Consensus 339 El~~~~-~~~~~l~l~~~y~y~~ 360 (441) T 3bry_A 339 GIGAEY-RYNAKWTFRGGFHYAQ 360 (441) T ss_dssp EEEEEE-EEETTEEEEEEEEEEE T ss_pred EEEEEE-EECCCEEEEEEEEECC T ss_conf 986799-9779889999899846 No 31 >>2vdf_A OPCA, outer membrane protein; invasin, adhesin, beta barrel; 1.95A {Neisseria meningitidis} (A:) Probab=92.95 E-value=0.41 Score=23.16 Aligned_cols=50 Identities=30% Similarity=0.416 Sum_probs=25.0 Q ss_pred CCCEEEEEEEEEEEE-CCCCC--EEEEEEEEEEECCCC---------------C--CCCEEEEEEEEEEC Q ss_conf 752047997346610-04886--799999999750565---------------5--66226999998539 Q gi|254780598|r 156 PIAIGGTAGVGVEVG-GLSES--LVARLEYRASKYSKV---------------E--GFYNTISLGVGMKF 205 (205) Q Consensus 156 ~~~~g~~~G~Gvey~-~it~~--~~~r~EY~y~df~~~---------------~--~~~~~~~~G~~ykF 205 (205) .+..++.+++|++.. .++++ ++++.=|||-...+- + ...++.-+.++||| T Consensus 184 ~~q~g~g~~~ga~i~k~l~~~~~l~~~P~yr~w~I~~S~~~~~~~~~~~~~~~ep~n~~~~yGv~~~~~F 253 (253) T 2vdf_A 184 QKTNGWGFGLGANIGKKLGESASIEAGPFYKQRTYKESGEFSVTTKSGDVSLTIPKTSIREYGLRVGIKF 253 (253) T ss_dssp EECCEEEEEEEEEEEEECC--CEEEEEEEEEEEEECCCCCBCC-------CBCCCCEEEEEEEEEEEEEC T ss_pred HHCCCCCEEEEEEEHHCCCCCCCEEEECEEEEEEECCCCCEEEEECCCCEEEECCCCCCEEEEEEEEEEC T ss_conf 0016833799788022036645366402045445404765378605884357658875225327888759 No 32 >>2qtk_A Probable porin; outer membrane protein, beta barrel, vanillate transport; HET: C8E; 2.80A {Pseudomonas aeruginosa} (A:) Probab=92.43 E-value=0.48 Score=22.78 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=26.6 Q ss_pred EEEEEEEEEEECCC----CCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC Q ss_conf 47997346610048----86799999999750565566226999998539 Q gi|254780598|r 160 GGTAGVGVEVGGLS----ESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205) Q Consensus 160 g~~~G~Gvey~~it----~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205) +.-+.+.+.| .++ +++++++-|.+.+ .+.+.+.+.+|+-+.|+| T Consensus 341 ~~E~~~~~~Y-~~~~g~~k~l~~~~~y~~~~-~~~~~d~~~~r~~~~Y~f 388 (390) T 2qtk_A 341 EWERDVELGY-TVQSGPLARLNVRLNHASNR-RSFNSDFDQTRLVVSYPL 388 (390) T ss_dssp EEEEEEEEEE-ECCSSTTTTCEEEEEEEEEE-ETTSCCEEEEEEEEEEEE T ss_pred CEEEEEEEEE-EECCCCCCCCEEEEEEEEEE-CCCCCCCEEEEEEEEEEE T ss_conf 1699899999-98776658858999987850-678898536999999771 No 33 >>3jty_A BENF-like porin; PFL_1329, benzoate transporter, efflux pump, structural genomics, PSI-2, protein structure initiative; HET: LDA; 2.58A {Pseudomonas fluorescens pf-5} (A:) Probab=92.32 E-value=0.5 Score=22.71 Aligned_cols=45 Identities=7% Similarity=0.000 Sum_probs=32.4 Q ss_pred EEEEEEEEEEECCC----CCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC Q ss_conf 47997346610048----86799999999750565566226999998539 Q gi|254780598|r 160 GGTAGVGVEVGGLS----ESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205) Q Consensus 160 g~~~G~Gvey~~it----~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205) ++-+-+-+.| .+. +++++++.|-+.+-..-+.+.+.+|+-+.|+| T Consensus 343 ~~E~~~~~~Y-~~~~g~lK~l~~~~~y~~~~~~~~~~d~~~~r~~~~Y~F 391 (402) T 3jty_A 343 EWGRESEVAY-TVQSGTLKNLNLKWRNSTMRRDFSNNEFDENRLIISYPL 391 (402) T ss_dssp EEEEEEEEEE-ECCSSSSCSCEEEEEEEEEEESSCSCCEEEEEEEEEEEE T ss_pred EEEEEEEEEE-EECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEEEE T ss_conf 2799999999-867876588489999999836778898558999999294 No 34 >>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A* (A:) Probab=89.16 E-value=1 Score=21.10 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=49.5 Q ss_pred EEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCC-CCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC-------- Q ss_conf 9998975431276778988544776444313455-5677520479973466100488679999999975056-------- Q gi|254780598|r 119 SLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAG-EITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK-------- 189 (205) Q Consensus 119 ~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~-~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~-------- 189 (205) .+.+-+.+.+.+.+.+.+ ++++.+.+.+.... ..-....-+++.+++.| .+.++|.+.+.++|..-.. T Consensus 335 G~E~~~~~~~~~~~~~~~--~~ty~~~~~~~~~~g~~l~~~p~~~~~~~~~y-~~~~~~~~~~~~~y~~~~~~~~~~~~~ 411 (439) T 3bs0_A 335 VASIGTAYKYNNDLTLRA--GYSYAQQALDSELILPVIPAYLKRHVTFGGEY-DFDKDSRINLAISFGLRERVQTPSYLA 411 (439) T ss_dssp EEEEEEEEECSSSEEEEE--EEEECC------CCCTTSCCCCSEEEEEEEEE-ESSSSEEEEEEEEEEEEEEEEC----- T ss_pred EEEEEEEEEECCCEEEEE--EEEECCCCCCCCCCCCCCCCCCCEEEEEEEEE-EECCCEEEEEEEEEECCCCCCCCCCCC T ss_conf 999612699689789999--79974678784310433457688899987999-808985999999997043101367777 Q ss_pred ------CCCCCEEEEEEEEEEC Q ss_conf ------5566226999998539 Q gi|254780598|r 190 ------VEGFYNTISLGVGMKF 205 (205) Q Consensus 190 ------~~~~~~~~~~G~~ykF 205 (205) .+.....+.+.++|+| T Consensus 412 ~~~~~~~~~~~~~~~l~~~~~~ 433 (439) T 3bs0_A 412 GTEMLRQSHSQINAVVSYSKNF 433 (439) T ss_dssp -CCCCEEEEEEEEEEEEEEEEE T ss_pred CCCCEEEEEEEEEEEEEEEEEE T ss_conf 7553145667899999999896 No 35 >>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa} (X:) Probab=88.24 E-value=1.2 Score=20.76 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=26.6 Q ss_pred EEEEEEEEEEECCCCCEEEEEEEEEEECC--CC-------CCCCEEEEEEEEEEC Q ss_conf 47997346610048867999999997505--65-------566226999998539 Q gi|254780598|r 160 GGTAGVGVEVGGLSESLVARLEYRASKYS--KV-------EGFYNTISLGVGMKF 205 (205) Q Consensus 160 g~~~G~Gvey~~it~~~~~r~EY~y~df~--~~-------~~~~~~~~~G~~ykF 205 (205) -+.+-++++| .++++|.+++.|.|.+-. +. ....+++.+++.|+| T Consensus 336 ~~g~el~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~ 389 (451) T 3dwo_X 336 TWTLAVGGDY-KVTDQWTMRAGVAYDQTPTHNATRDPRIPDGDRYFASLGAGYRF 389 (451) T ss_dssp EEEEEEEEEE-ESSSSEEEEEEEEEECCSCCTTTCCSSSCCCCEEEEEEEEEEEC T ss_pred CEEEEEEEEE-EECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEE T ss_conf 1258888999-94897899999996667878543153100578779998899997 No 36 >>3dwn_A Long-chain fatty acid transport protein; beta barrel, outer membrane protein, lipid transport, membrane, outer membrane, phage recognition; HET: LDA; 2.50A {Escherichia coli} PDB: 1t16_A* 1t1l_A* 2r4p_A* 2r4n_A* 2r4l_A* 2r4o_A* 2r89_A 2r8a_A* 2r88_A (A:) Probab=85.34 E-value=1.8 Score=19.89 Aligned_cols=21 Identities=5% Similarity=0.060 Sum_probs=10.6 Q ss_pred EEEEEEEEECCCCCEEEEEEEE Q ss_conf 9973466100488679999999 Q gi|254780598|r 162 TAGVGVEVGGLSESLVARLEYR 183 (205) Q Consensus 162 ~~G~Gvey~~it~~~~~r~EY~ 183 (205) ++.+++.| .++++|.+.+.-+ T Consensus 368 ~~dl~~~y-~~~~~~~l~~~v~ 388 (427) T 3dwn_A 368 WLSAGTTY-AFNKDASVDVGVS 388 (427) T ss_dssp EEEEEEEE-ESSSSEEEEEEEE T ss_pred EEEEEEEE-ECCCCEEEEEEEE T ss_conf 99987979-8389869999999 No 37 >>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A* (A:1-83) Probab=83.88 E-value=0.34 Score=23.55 Aligned_cols=26 Identities=35% Similarity=0.267 Sum_probs=17.6 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 94437899999999984100002466 Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAADP 26 (205) Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aad~ 26 (205) |||+++.+.+.+++++...++.++.. T Consensus 1 Mkk~li~~~~~~l~~~~~~~~~~~~~ 26 (83) T 2a3m_A 1 MRKSLFAVMVLALVAAFALPVIAAEA 26 (83) T ss_dssp -----------------------CCC T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 90689999999999999856643028 No 38 >>1af6_A Maltoporin, LAMB; membrane protein, specific porin, beta barrel, sugar transport, sucrose; HET: GLC FRU; 2.40A {Escherichia coli} (A:) Probab=79.45 E-value=3.1 Score=18.66 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=43.7 Q ss_pred EEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEE Q ss_conf 489998975431276778988544776444313455567752047997346610048867999999 Q gi|254780598|r 117 GGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEY 182 (205) Q Consensus 117 ~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY 182 (205) ..++.+|+-|.+++.+-+-..+||...+.+......+-.+.-..+++-+|..+ .--|.+-+-+-| T Consensus 305 ~~s~~vRP~y~~~~~~~~~~E~gy~~~~~~~~g~~~~~~K~TiApt~~~g~~~-~sRPeiR~faTY 369 (421) T 1af6_A 305 WWTVGIRPMYKWTPIMSTVMEIGYDNVESQRTGDKNNQYKITLAQQWQAGDSI-WSRPAIRVFATY 369 (421) T ss_dssp EEEEEEEEEEESSSSEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEESSSST-TCSCEEEEEEEE T ss_pred EEEEEEEEEEEECCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCC-CCCCEEEEEEEE T ss_conf 99999788789768426999988988742788876644799998615307887-779579999999 No 39 >>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} (A:1-45,A:210-554) Probab=77.96 E-value=3.4 Score=18.42 Aligned_cols=46 Identities=11% Similarity=0.017 Sum_probs=30.4 Q ss_pred CEEEEEEEEEEEECCCCCEEEEEEEEEEECC---CCCCCCEEEEEEEEEEC Q ss_conf 2047997346610048867999999997505---65566226999998539 Q gi|254780598|r 158 AIGGTAGVGVEVGGLSESLVARLEYRASKYS---KVEGFYNTISLGVGMKF 205 (205) Q Consensus 158 ~~g~~~G~Gvey~~it~~~~~r~EY~y~df~---~~~~~~~~~~~G~~ykF 205 (205) ..-..+|+|+.+ .++...+|++|-+---. +...+...+.+.+++.| T Consensus 342 ~~~~s~G~Glr~--~~~~~~l~l~~a~~l~~~~~~~~~~~~~~~f~ig~~F 390 (390) T 2qdz_A 342 IRMAGLAAGVRF--DLPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGLSF 390 (390) T ss_dssp EEEEEEEEEEEE--CCSSEEEEEEEEEECSCSCSSSCCCCSEEEEEEEEEC T ss_pred CEEEEEEEEEEE--EECCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEC T ss_conf 769999999999--9388789999998767898887688659999998289 No 40 >>2odj_A Porin D; outer membrane protein, beta-barrel, amino acid transport; HET: C8E; 2.90A {Pseudomonas aeruginosa PAO1} (A:) Probab=66.44 E-value=6.6 Score=16.94 Aligned_cols=48 Identities=15% Similarity=0.063 Sum_probs=34.3 Q ss_pred CCEEEEEEEEEEEECCC----CCEEEEEEEEEEE--CCCCCCCCEEEEEEEEEEC Q ss_conf 52047997346610048----8679999999975--0565566226999998539 Q gi|254780598|r 157 IAIGGTAGVGVEVGGLS----ESLVARLEYRASK--YSKVEGFYNTISLGVGMKF 205 (205) Q Consensus 157 ~~~g~~~G~Gvey~~it----~~~~~r~EY~y~d--f~~~~~~~~~~~~G~~ykF 205 (205) ...+.-+.+-+.| .++ +++++++.|-+.+ ....+.+.+.+|+-+.|+| T Consensus 364 ~~~~~E~~~~~~Y-~~~~g~~K~L~~~~~~~~~~~d~~~~~~d~~~~rl~~~Y~F 417 (428) T 2odj_A 364 DGKHHETNLEAKY-VVQSGPAKDLSFRIRQAWHRANADQGEGDQNEFRLIVDYPL 417 (428) T ss_dssp SEEEEEEEEEEEE-ECCSSTTTTCEEEEEEEEEEECTTTSSCSBEEEEEEEEEEE T ss_pred CCCEEEEEEEEEE-EECCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEEEEE T ss_conf 7741589789999-97888757838999999995467657898648999999390 No 41 >>1jb0_F Photosystem 1 reaction centre subunit III; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} (F:1-79) Probab=53.46 E-value=3.3 Score=18.48 Aligned_cols=27 Identities=30% Similarity=0.170 Sum_probs=20.5 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCC--CCCC Q ss_conf 94437899999999984100002--4665 Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQA--ADPV 27 (205) Q Consensus 1 Mkk~~la~av~~lal~~~~~A~A--ad~~ 27 (205) |||++..+.+..+.++.+.+|.| +.++ T Consensus 1 Mrrl~aliL~~~l~~~~~p~A~Ad~agLt 29 (79) T 1jb0_F 1 MRRFLALLLVLTLWLGFTPLASADVAGLV 29 (79) T ss_dssp -----------------------CGGGCE T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHCCCC T ss_conf 92799999999999838963012440785 No 42 >>1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} (A:1-134,A:224-292) Probab=43.49 E-value=6.1 Score=17.10 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=10.6 Q ss_pred CHHHHHHHHHHHHHHHH Q ss_conf 94437899999999984 Q gi|254780598|r 1 MQKLFLAVGVSSLALAS 17 (205) Q Consensus 1 Mkk~~la~av~~lal~~ 17 (205) |||++..++++++++++ T Consensus 1 MKk~l~~~~~~l~ll~~ 17 (203) T 1xt8_A 1 MKYLLPTAAAGLLLLAA 17 (203) T ss_dssp ----------------- T ss_pred CCHHHHHHHHHHHHHHH T ss_conf 93189999999999999 No 43 >>2qn4_A RASI, alpha-amylase/subtilisin inhibitor; amylase inhibitor, alpha- amylase inhibitor, protease inhibitor, serine protease inhibitor; 1.80A {Oryza sativa subsp} (A:) Probab=41.24 E-value=8.8 Score=16.31 Aligned_cols=31 Identities=32% Similarity=0.326 Sum_probs=21.3 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 9443789999999998410000246654356 Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAADPVRRAH 31 (205) Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~ 31 (205) ||.+.+...+.++++.+..++.+++++.... T Consensus 1 MKs~~l~~l~l~~~~ts~~~~~~~~~VlD~~ 31 (200) T 2qn4_A 1 MVSLRLPLILLSLLAISFSCSAAPPPVYDTE 31 (200) T ss_dssp ----------------------CCCBCBCTT T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEECCC T ss_conf 9106899999999998653325898539399 No 44 >>2vx5_A Cellvibrio japonicus mannanase cjman26C; hydrolase; HET: BMA; 1.47A {Cellvibrio japonicus} PDB: 2vx4_A* 2vx6_A* 2vx7_A* (A:) Probab=38.60 E-value=11 Score=15.81 Aligned_cols=18 Identities=17% Similarity=-0.025 Sum_probs=7.3 Q ss_pred CHHHHHHHHHHHHHHHHC Q ss_conf 944378999999999841 Q gi|254780598|r 1 MQKLFLAVGVSSLALASF 18 (205) Q Consensus 1 Mkk~~la~av~~lal~~~ 18 (205) |||.++.+.++++++..+ T Consensus 3 ~~k~~~~~~~~~~~~~~~ 20 (396) T 2vx5_A 3 EKPAESAAAVADSATTTA 20 (396) T ss_dssp ------------------ T ss_pred CCHHHHHHHHHHCCCCCC T ss_conf 662566777760344346 No 45 >>2dck_A Xylanase J; family 11, xylan binding domain (XBM), beta-jelly roll, alkaliphilic xylanase, hydrolase; 2.10A {Bacillus SP} PDB: 2dcj_A (A:1-232) Probab=37.25 E-value=19 Score=14.56 Aligned_cols=14 Identities=7% Similarity=0.147 Sum_probs=8.3 Q ss_pred CHHHHHHHHHHHHH Q ss_conf 94437899999999 Q gi|254780598|r 1 MQKLFLAVGVSSLA 14 (205) Q Consensus 1 Mkk~~la~av~~la 14 (205) ||++.+.+++++++ T Consensus 1 m~~~~~~~~~a~~~ 14 (232) T 2dck_A 1 MKQVKIMFLMTMFL 14 (232) T ss_dssp -------------- T ss_pred CCHHHHHHHHHHHH T ss_conf 95021369899999 No 46 >>1a0s_P Sucrose-specific porin; outer membrane protein; 2.40A {Salmonella typhimurium} (P:) Probab=35.86 E-value=23 Score=14.18 Aligned_cols=127 Identities=13% Similarity=-0.067 Sum_probs=68.8 Q ss_pred CCCCEEEEEEEEEEECC-CEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCC Q ss_conf 77602689985464048-37998451013215556666212232148999897543127677898854477644431345 Q gi|254780598|r 73 HHNAGGSIFAGYNVEDS-CIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKA 151 (205) Q Consensus 73 ~~~~~~G~~~GYn~q~~-~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~ 151 (205) +++.+.-+.-=-.+++. +|-+...+-+...+..... ..+.. ..++.+|+-|.+++.+-+-..+||...+.+..... T Consensus 262 ~d~~s~Ri~~~g~~~~~~~~~~~~~~~y~~~~d~~~~--~~~~~-~~s~~vRP~y~~~~~~~~~~E~gy~~~~~~~~~~~ 338 (413) T 1a0s_P 262 PGADTWRIASYGTTPLSENWSVAPAMLAQRSKDRYAD--GDSYQ-WATFNLRLIQAINQNFALAYEGSYQYMDLKPEGYN 338 (413) T ss_dssp TTCEEEEEEEEEEEESSSSEEEEEEEEEEEEESSSST--TCEEE-EEEEEEEEEEECSSSEEEEEEEEEEEEEEECTTGG T ss_pred CCCEEEEEEEECCEECCCCEEEEEEEEEEEECCCCCC--CCCEE-EEEEEEEEEEEECCCEEEEEEEEEEEECCCCCCCC T ss_conf 9851899998732752487677677899984166678--99638-99999898689768678999999876303446753 Q ss_pred CCCC------CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC--------------CCCCEEEEEEEEE Q ss_conf 5567------75204799734661004886799999999750565--------------5662269999985 Q gi|254780598|r 152 GEIT------PIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV--------------EGFYNTISLGVGM 203 (205) Q Consensus 152 ~~~~------~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~--------------~~~~~~~~~G~~y 203 (205) .... +.-..+++-+|.+- -+-.+=.+|+=+.|.+..+. ..+.+++.+|+-. T Consensus 339 ~~~~~~~~~~K~TlApt~~~~~~~-~fwsRPelR~faTY~~w~~~~~~~~~~~~~~~~~~~~~~~~~fGvQ~ 409 (413) T 1a0s_P 339 DRQAVNGSFYKLTFAPTFKVGSIG-DFFSRPEIRFYTSWMDWSKKLNNYASDDALGSDGFNSGGEWSFGVQM 409 (413) T ss_dssp GCCCEEEEEEEEEEEEEEESSCTT-CTTCCCEEEEEEEEEEECGGGGGSCSSSSTTSTTCCSSCEEEEEEEE T ss_pred CCCCCCCCEEEEEEEEEECCCCCC-CCCCCCEEEEEEEEEECCHHHCCCCCCCCCCCCCCCCCCCEEEEEEE T ss_conf 676667846899998641328978-77779789999999804402111223565454566888878999999 No 47 >>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protein secretion, microbial pathogenesi; HET: C8E; 2.30A {Haemophilus influenzae} (A:) Probab=34.45 E-value=24 Score=14.06 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=24.6 Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC Q ss_conf 99734661004886799999999750565566226999998539 Q gi|254780598|r 162 TAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205) Q Consensus 162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205) .+.+|+-+...+++|.+++---... .....+.+|++|+| T Consensus 91 AvAiG~~~~~~~~~~~~~~~~s~~s-----~~~~~~gaGv~~~f 129 (129) T 2gr7_A 91 GLAIGVSRISDNGKVIIRLSGTTNS-----QGKTGVAAGVGYQW 129 (129) T ss_dssp EEEEEEEEECTTSCEEEEEEEEEET-----TCCCEEEEEEEEEC T ss_pred EEEEEEEEECCCCCEEEEEEEEECC-----CCCEEEEEEEEEEC T ss_conf 4998889970478799999898648-----99779997777689 No 48 >>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Flavobacterium heparinium} (A:1-474) Probab=34.17 E-value=10 Score=15.93 Aligned_cols=29 Identities=17% Similarity=0.031 Sum_probs=21.0 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 94437899999999984100002466543 Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAADPVRR 29 (205) Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aad~~~~ 29 (205) |||+++.++...+.++..+.+.+++.... T Consensus 1 Mk~~~~~~~~~~~~v~~~~~~~~~~~~~~ 29 (474) T 1dbg_A 1 MKMLNKLAGYLLPIMVLLNVAPCLGQVVA 29 (474) T ss_dssp -------------------------CEEC T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCEEECC T ss_conf 90699999999999998601201005508 No 49 >>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase/receptor, PCSK9, proprotein convertase, EGF, cardiovascular disease; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P (P:) Probab=33.63 E-value=10 Score=16.02 Aligned_cols=27 Identities=11% Similarity=-0.060 Sum_probs=17.6 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 944378999999999841000024665 Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAADPV 27 (205) Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aad~~ 27 (205) ||++.+++..+.+.+.....+.++++. T Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~a~~~ 27 (114) T 2w2n_P 1 MKGSKGSKGSKPMSAEAPEHGTTATFH 27 (114) T ss_dssp ---------------------CCCEEE T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 998888999987765687667514566 No 50 >>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, structural genomics; 2.00A {Homo sapiens} (A:) Probab=33.12 E-value=16 Score=14.92 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=10.4 Q ss_pred CHHHHHHHHHHHHHHHHC Q ss_conf 944378999999999841 Q gi|254780598|r 1 MQKLFLAVGVSSLALASF 18 (205) Q Consensus 1 Mkk~~la~av~~lal~~~ 18 (205) |||+++.+.+.++++++. T Consensus 1 Mk~~~~~~~~~~~~~~~~ 18 (215) T 2i3y_A 1 MHHHHHHSSGVDLGTENL 18 (215) T ss_dssp ------------------ T ss_pred CCCCCCCCCCCCHHHHHH T ss_conf 975434455510123677 No 51 >>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} (A:) Probab=31.55 E-value=12 Score=15.70 Aligned_cols=23 Identities=43% Similarity=0.353 Sum_probs=12.4 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 944378999999999841000024 Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAA 24 (205) Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aa 24 (205) |||+++.+++.++. .+++++.|+ T Consensus 1 Mk~~~~~l~~~~~~-~~~~~~~a~ 23 (191) T 1y0g_A 1 MKKSLLGLTFASLM-FSAGSAVAA 23 (191) T ss_dssp -----------------------C T ss_pred CCHHHHHHHHHHHH-HHHHHCCCC T ss_conf 92469999999999-763240366 No 52 >>3dzm_A TTOA, hypothetical conserved protein; OMP, beta-barrel, unknown function; HET: C8E; 2.80A {Thermus thermophilus HB27} (A:) Probab=29.96 E-value=29 Score=13.65 Aligned_cols=51 Identities=20% Similarity=0.075 Sum_probs=23.6 Q ss_pred CEEEEEEEEEEEEEEEEC--CC-----CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEE Q ss_conf 677898854477644431--34-----55567752047997346610048867999999 Q gi|254780598|r 131 SLLLYATVGPDVAQKYET--GK-----AGEITPIAIGGTAGVGVEVGGLSESLVARLEY 182 (205) Q Consensus 131 ~~l~Y~~~G~a~~~~~~~--~~-----~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY 182 (205) .+.+|.-+=|..-+.... .+ ....+.+..|.-.|+=..| +|++|+++-.+- T Consensus 100 ~~~~Y~GgRYgmF~a~~t~~ed~~~~~s~t~sSnafG~G~G~ma~Y-al~~nlSLVgDL 157 (214) T 3dzm_A 100 EVAPYFGVRYNFFSGGYTDPEDNLTIKAQTISSNQLGLGLGVRAAY-PLMPNLSLVGDL 157 (214) T ss_dssp EEEEEEEEEEEEEEEEEECCSSSSSSCEEEEEEEEEEEEEEEEEEE-EEETTEEEEEEE T ss_pred EEEEECCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCEEEEC-CCCCCCCEEEEC T ss_conf 2357605102455120103677741012046503335350115520-026873024304 No 53 >>2f2f_C CDT C, cytolethal distending toxin C; actinobacillus actinomycetemcomitans, oligomerization, stability and toxic activity; 2.40A {Aggregatibacter actinomycetemcomitans} (C:) Probab=28.93 E-value=21 Score=14.40 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=9.9 Q ss_pred CHHHHHHHHHHHHH Q ss_conf 94437899999999 Q gi|254780598|r 1 MQKLFLAVGVSSLA 14 (205) Q Consensus 1 Mkk~~la~av~~la 14 (205) |||++++..+..+. T Consensus 1 MkK~~i~f~~~~i~ 14 (186) T 2f2f_C 1 MKKYLLSFLLSMIL 14 (186) T ss_dssp -------------- T ss_pred CCHHHHHHHHHHHH T ss_conf 93116999999998 No 54 >>3e4r_A Nitrate transport protein; ALFA-beta protein, substrate-binding protein domain, alkanesulfonate-binding protein; HET: EPE; 2.01A {Xanthomonas axonopodis PV} (A:1-109,A:208-279) Probab=28.55 E-value=15 Score=15.18 Aligned_cols=15 Identities=20% Similarity=-0.137 Sum_probs=7.0 Q ss_pred CHHHHHHHHHHHHHH Q ss_conf 944378999999999 Q gi|254780598|r 1 MQKLFLAVGVSSLAL 15 (205) Q Consensus 1 Mkk~~la~av~~lal 15 (205) |||+...+..+++++ T Consensus 1 Mk~~~~~~~~~~~~~ 15 (181) T 3e4r_A 1 MGSSHHHHHHSSGLV 15 (181) T ss_dssp --------------- T ss_pred CCCCCCCCCCHHCCC T ss_conf 986544443100034 No 55 >>3cbc_A Neutrophil gelatinase-associated lipocalin; siderocalin, NGAL, enterobactin, glycoprotein, pyrrolidone carboxylic acid, secreted; HET: DBS; 2.17A {Homo sapiens} PDB: 3cmp_A* 3by0_A* (A:) Probab=27.99 E-value=27 Score=13.78 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=12.7 Q ss_pred CHHHHHHHHHHHHHHHHC Q ss_conf 944378999999999841 Q gi|254780598|r 1 MQKLFLAVGVSSLALASF 18 (205) Q Consensus 1 Mkk~~la~av~~lal~~~ 18 (205) ||++++.+.+.++.++.+ T Consensus 1 Mk~~~~~~~l~l~~~l~a 18 (198) T 3cbc_A 1 MPLGLLWLGLALLGALHA 18 (198) T ss_dssp ------------------ T ss_pred CCHHHHHHHHHHHHHHHH T ss_conf 936899999999999971 No 56 >>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} (A:) Probab=26.85 E-value=21 Score=14.31 Aligned_cols=25 Identities=12% Similarity=-0.194 Sum_probs=16.6 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 9443789999999998410000246 Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAAD 25 (205) Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aad 25 (205) ||++++++.++++.+++...+.+.. T Consensus 1 Mr~~~~~~~~~~~~~~~~~~~~~~~ 25 (220) T 1zye_A 1 MGSSHHHHHHSSGLVPRGSHMLEDP 25 (220) T ss_dssp ------------------------- T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 9865544334556564886324698 No 57 >>3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} (A:) Probab=24.90 E-value=17 Score=14.89 Aligned_cols=18 Identities=11% Similarity=0.096 Sum_probs=12.3 Q ss_pred CHHHHHHHHHHHHHHHHC Q ss_conf 944378999999999841 Q gi|254780598|r 1 MQKLFLAVGVSSLALASF 18 (205) Q Consensus 1 Mkk~~la~av~~lal~~~ 18 (205) |||.+++++++++++++. T Consensus 1 Mkk~~~~~~~~~~~~~~l 18 (355) T 3c9h_A 1 MRICLFLCLCLCMASPAL 18 (355) T ss_dssp ---------------CEE T ss_pred CCHHHHHHHHHHHHHHHH T ss_conf 936999999999999999 No 58 >>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} (A:1-195) Probab=24.71 E-value=15 Score=15.04 Aligned_cols=19 Identities=0% Similarity=-0.242 Sum_probs=9.3 Q ss_pred CHHHHHHHHHHHHHHHHCC Q ss_conf 9443789999999998410 Q gi|254780598|r 1 MQKLFLAVGVSSLALASFC 19 (205) Q Consensus 1 Mkk~~la~av~~lal~~~~ 19 (205) |||++..+.++.+++.+.+ T Consensus 6 mk~~~~~~~~~~~~~~~~~ 24 (195) T 1toa_A 6 HHHHDYDIPTTENLYFQGA 24 (195) T ss_dssp ------------------- T ss_pred CCCCCCCCCCHHHHHHHHH T ss_conf 4543357731699999999 No 59 >>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} (A:) Probab=24.27 E-value=19 Score=14.64 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=7.4 Q ss_pred CHHHHHHHHHHHH Q ss_conf 9443789999999 Q gi|254780598|r 1 MQKLFLAVGVSSL 13 (205) Q Consensus 1 Mkk~~la~av~~l 13 (205) |||..+++++.++ T Consensus 1 Mk~~~~~~~~~~~ 13 (290) T 1twy_A 1 MSLIRMALAAVCA 13 (290) T ss_dssp ------------- T ss_pred CCCHHHHHHHHHH T ss_conf 9608999999999 No 60 >>2gr8_A Adhesin; trimeric autotransporter, adhesion, protein secretion, microbial pathogenesis, membrane protein; 2.00A {Haemophilus influenzae} (A:) Probab=23.87 E-value=38 Score=13.04 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=23.9 Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC Q ss_conf 99734661004886799999999750565566226999998539 Q gi|254780598|r 162 TAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205) Q Consensus 162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205) .+.+|+-+...++||.+++---... ...-.+.+|++|+| T Consensus 61 AvAvG~s~~~~n~~~~~~~~~s~~~-----~~~~~~gaGv~y~f 99 (99) T 2gr8_A 61 GLAIGVSRISDNGKVIIRLSGTTNS-----QGKTGVAAGVGYQW 99 (99) T ss_dssp EEEEEEEEECTTSCEEEEEEEEEET-----TCCCEEEEEEEEEC T ss_pred EEEEEEEEEEECCCEEEEEEEEECC-----CCCEEEEEEEEEEC T ss_conf 6998878874178799999788548-----99779997777789 No 61 >>2guf_A Vitamin B12 transporter BTUB; beta barrel, cubic mesophase, cobalamin, colicin, transport protein; HET: MPG; 1.95A {Escherichia coli} (A:134-594) Probab=22.94 E-value=40 Score=12.94 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=7.8 Q ss_pred EEEEECCCEEEEEEEEEE Q ss_conf 754312767789885447 Q gi|254780598|r 124 GGYEVSDSLLLYATVGPD 141 (205) Q Consensus 124 ~Gy~~~~~~l~Y~~~G~a 141 (205) +-|.+++.+.+|+..+-+ T Consensus 242 l~y~~~~~~~l~~s~~~~ 259 (461) T 2guf_A 242 AGWEFIEGYRFIASYGTS 259 (461) T ss_dssp EEEEEETTEEEEEEEEEE T ss_pred CCCCCCCCCCCCCCCCCC T ss_conf 122211122333322111 No 62 >>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase; HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A* 2w5x_A* 2iuc_A 2iuc_B (A:1-304,A:338-375) Probab=22.88 E-value=27 Score=13.80 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=8.0 Q ss_pred CHHHHHHHHHHHHHHH Q ss_conf 9443789999999998 Q gi|254780598|r 1 MQKLFLAVGVSSLALA 16 (205) Q Consensus 1 Mkk~~la~av~~lal~ 16 (205) ||+..+...+.++++. T Consensus 1 M~~~~~~~~~~~~~~~ 16 (342) T 2w5v_A 1 MKLKKIVFTLIALGLF 16 (342) T ss_dssp ---------------- T ss_pred CCCHHHHHHHHHHHHH T ss_conf 9707999999999999 No 63 >>3lay_A Zinc resistance-associated protein; salmonella typhimurium LT2, ZRAP, periplasm, structural genomics; 2.70A {Salmonella enterica subsp} (A:) Probab=22.22 E-value=22 Score=14.31 Aligned_cols=17 Identities=6% Similarity=-0.283 Sum_probs=8.7 Q ss_pred CHHHHHHHHHHHHHHHH Q ss_conf 94437899999999984 Q gi|254780598|r 1 MQKLFLAVGVSSLALAS 17 (205) Q Consensus 1 Mkk~~la~av~~lal~~ 17 (205) |||+++.+.+.++++.. T Consensus 25 Mk~~~~~~~~~~~l~~~ 41 (175) T 3lay_A 25 MKRNNKSAIALIALSLL 41 (175) T ss_dssp ----------------- T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 66899999999999999 No 64 >>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} (A:) Probab=21.38 E-value=23 Score=14.15 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=11.5 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 9443789999999998410000246 Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAAD 25 (205) Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aad 25 (205) |||.+|++ |+.++.|.|++ T Consensus 1 m~~~ila~------l~~~g~a~A~~ 19 (314) T 1us5_A 1 MRKPILAA------LTLAGLGLAQE 19 (314) T ss_dssp ----------------------CCE T ss_pred CCHHHHHH------HHHHHHHHHCC T ss_conf 92799999------99733563441 Done!