Query         gi|254780598|ref|YP_003065011.1| outer membrane protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 205
No_of_seqs    139 out of 814
Neff          7.4 
Searched_HMMs 33803
Date          Wed Jun  1 15:27:16 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780598.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1p4t_A Outer membrane protein  99.9 4.9E-25 1.5E-29  146.1  15.1  147   53-205     3-155 (155)
  2 >1qjp_A Outer membrane protein  99.9 1.3E-21   4E-26  128.4  17.5  151   51-205     2-170 (171)
  3 >1orm_A Outer membrane protein  99.9 2.6E-24 7.7E-29  142.3  -5.6  132   71-205    15-148 (148)
  4 >2f1v_A Outer membrane protein  99.9 4.3E-20 1.3E-24  120.7  15.5  150   51-205     1-191 (197)
  5 >2k0l_A Outer membrane protein  99.8 2.6E-19 7.7E-24  116.7  18.1  152   50-205    13-192 (216)
  6 >2jmm_A Outer membrane protein  99.8   1E-19   3E-24  118.7  14.4  142   53-205     4-150 (156)
  7 >2f1c_X OMPG, outer membrane p  99.1 6.7E-09   2E-13   63.2  16.0   51  154-205   227-280 (286)
  8 >1uyn_X NALP; autotransporter,  98.9 2.1E-07 6.2E-12   55.5  14.5  128   75-205   154-308 (308)
  9 >2qom_A Serine protease ESPP;   98.8   3E-07 8.9E-12   54.7  13.7  150   54-205    92-277 (285)
 10 >3kvn_X Esterase ESTA; beta ba  98.6 6.5E-06 1.9E-10   47.8  15.2  128   75-205   154-311 (311)
 11 >2por_A Porin; HET: C8E; 1.80A  98.1 0.00039 1.2E-08   38.7  16.3   46  156-205   256-301 (301)
 12 >1pho_A Phosphoporin; outer me  98.0 0.00041 1.2E-08   38.6  18.2   80  120-205   247-330 (330)
 13 >3prn_A Porin; integral membra  97.9 0.00053 1.6E-08   38.0  13.1   38  162-205   252-289 (289)
 14 >2j1n_A Outer membrane protein  97.9 0.00072 2.1E-08   37.3  17.5   46  159-205   294-346 (346)
 15 >1i78_A Protease VII; integral  97.9 0.00073 2.1E-08   37.3  15.3   84  120-205   181-297 (297)
 16 >2zfg_A Outer membrane protein  97.8  0.0012 3.6E-08   36.1  16.3   77  123-205   260-340 (340)
 17 >2erv_A Hypothetical protein P  97.6  0.0027 8.1E-08   34.3  16.1  114   90-205    34-150 (150)
 18 >2f1c_X OMPG, outer membrane p  97.4  0.0042 1.2E-07   33.4  15.3  110   71-185    62-174 (286)
 19 >2jmm_A Outer membrane protein  96.7   0.013 3.7E-07   30.9   8.3   88   73-169    54-148 (156)
 20 >1qjp_A Outer membrane protein  96.4    0.03 8.8E-07   29.0   8.8   19  118-136   121-139 (171)
 21 >2qom_A Serine protease ESPP;   96.1   0.059 1.7E-06   27.5  15.3  112   73-186    77-210 (285)
 22 >2k0l_A Outer membrane protein  96.0   0.045 1.3E-06   28.1   8.0   68   74-141    90-166 (216)
 23 >1uyn_X NALP; autotransporter,  96.0   0.063 1.9E-06   27.3  14.7   69  116-185   153-235 (308)
 24 >2wjr_A Probable N-acetylneura  95.8   0.077 2.3E-06   26.9  17.5   53  152-205   157-214 (214)
 25 >3kvn_X Esterase ESTA; beta ba  95.8   0.078 2.3E-06   26.9  17.0   30   74-103    59-89  (311)
 26 >2o4v_A Porin P; outer membran  95.4    0.11 3.2E-06   26.1  18.4   49  156-205   358-411 (411)
 27 >2wjr_A Probable N-acetylneura  95.3    0.12 3.5E-06   25.9  15.0   98   78-187    54-152 (214)
 28 >2fgq_X OMP32, outer membrane   94.9    0.16 4.9E-06   25.2  16.3   48  157-205   268-332 (332)
 29 >2f1v_A Outer membrane protein  94.8    0.15 4.3E-06   25.5   7.1   32  112-143   128-159 (197)
 30 >3bry_A TBUX; beta barrel, out  94.3    0.23 6.8E-06   24.4  16.0   22  164-186   339-360 (441)
 31 >2vdf_A OPCA, outer membrane p  92.9    0.41 1.2E-05   23.2  16.0   50  156-205   184-253 (253)
 32 >2qtk_A Probable porin; outer   92.4    0.48 1.4E-05   22.8  13.8   44  160-205   341-388 (390)
 33 >3jty_A BENF-like porin; PFL_1  92.3     0.5 1.5E-05   22.7  15.5   45  160-205   343-391 (402)
 34 >3bs0_A TODX; beta barrel, out  89.2       1   3E-05   21.1  15.4   84  119-205   335-433 (439)
 35 >3dwo_X Probable outer membran  88.2     1.2 3.5E-05   20.8  11.1   45  160-205   336-389 (451)
 36 >3dwn_A Long-chain fatty acid   85.3     1.8 5.2E-05   19.9  13.1   21  162-183   368-388 (427)
 37 >2a3m_A COG3005: nitrate/TMAO   83.9    0.34   1E-05   23.5   0.8   26    1-26      1-26  (83)
 38 >1af6_A Maltoporin, LAMB; memb  79.5     3.1   9E-05   18.7  14.6   65  117-182   305-369 (421)
 39 >2qdz_A TPSB transporter FHAC;  78.0     3.4  0.0001   18.4   9.3   46  158-205   342-390 (390)
 40 >2odj_A Porin D; outer membran  66.4     6.6  0.0002   16.9  14.7   48  157-205   364-417 (428)
 41 >1jb0_F Photosystem 1 reaction  53.5     3.3 9.8E-05   18.5   0.1   27    1-27      1-29  (79)
 42 >1xt8_A Putative amino-acid tr  43.5     6.1 0.00018   17.1   0.2   17    1-17      1-17  (203)
 43 >2qn4_A RASI, alpha-amylase/su  41.2     8.8 0.00026   16.3   0.7   31    1-31      1-31  (200)
 44 >2vx5_A Cellvibrio japonicus m  38.6      11 0.00032   15.8   0.8   18    1-18      3-20  (396)
 45 >2dck_A Xylanase J; family 11,  37.2      19 0.00057   14.6   1.9   14    1-14      1-14  (232)
 46 >1a0s_P Sucrose-specific porin  35.9      23 0.00067   14.2  19.4  127   73-203   262-409 (413)
 47 >2gr7_A Adhesin; trimeric auto  34.4      24 0.00071   14.1   6.4   39  162-205    91-129 (129)
 48 >1dbg_A Chondroitinase B; beta  34.2      10 0.00031   15.9   0.1   29    1-29      1-29  (474)
 49 >2w2n_P Proprotein convertase   33.6      10  0.0003   16.0  -0.0   27    1-27      1-27  (114)
 50 >2i3y_A Epididymal secretory g  33.1      16 0.00048   14.9   1.0   18    1-18      1-18  (215)
 51 >1y0g_A Protein YCEI; lipid bi  31.6      12 0.00034   15.7   0.0   23    1-24      1-23  (191)
 52 >3dzm_A TTOA, hypothetical con  30.0      29 0.00085   13.6   7.9   51  131-182   100-157 (214)
 53 >2f2f_C CDT C, cytolethal dist  28.9      21 0.00061   14.4   0.9   14    1-14      1-14  (186)
 54 >3e4r_A Nitrate transport prot  28.5      15 0.00043   15.2   0.1   15    1-15      1-15  (181)
 55 >3cbc_A Neutrophil gelatinase-  28.0      27 0.00081   13.8   1.4   18    1-18      1-18  (198)
 56 >1zye_A Thioredoxin-dependent   26.8      21 0.00063   14.3   0.7   25    1-25      1-25  (220)
 57 >3c9h_A ABC transporter, subst  24.9      17 0.00049   14.9  -0.2   18    1-18      1-18  (355)
 58 >1toa_A Tromp-1, protein (peri  24.7      15 0.00046   15.0  -0.3   19    1-19      6-24  (195)
 59 >1twy_A ABC transporter, perip  24.3      19 0.00055   14.6   0.0   13    1-13      1-13  (290)
 60 >2gr8_A Adhesin; trimeric auto  23.9      38  0.0011   13.0   6.4   39  162-205    61-99  (99)
 61 >2guf_A Vitamin B12 transporte  22.9      40  0.0012   12.9  15.8   18  124-141   242-259 (461)
 62 >2w5v_A Alkaline phosphatase;   22.9      27  0.0008   13.8   0.6   16    1-16      1-16  (342)
 63 >3lay_A Zinc resistance-associ  22.2      22 0.00064   14.3   0.0   17    1-17     25-41  (175)
 64 >1us5_A Putative GLUR0 ligand   21.4      23 0.00068   14.2   0.0   19    1-25      1-19  (314)

No 1  
>>1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A {Neisseria meningitidis} (A:)
Probab=99.93  E-value=4.9e-25  Score=146.06  Aligned_cols=147  Identities=16%  Similarity=0.112  Sum_probs=119.1

Q ss_pred             CCCCCCCCCCCCCCCCCC-CCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCC
Q ss_conf             421000122333344667-7777602689985464048379984510132155566662122321489998975431276
Q gi|254780598|r   53 FNGPYAGLSALYNGSFGE-EAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDS  131 (205)
Q Consensus        53 w~G~y~g~~~g~~~~~~~-~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~  131 (205)
                      -+++|+|..+|+.....+ +.+++...++.+||+|+.    +++|+++.+...........+. +...+.++..|+++++
T Consensus         3 ~~~~yvg~~~G~~~~~~~~~~~~~~~~g~~~GY~fn~----~~~e~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~   77 (155)
T 1p4t_A            3 ASGFYVQADAAHAKASSSLGSAKGFSPRISAGYRIND----LRFAVDYTRYKNYKAPSTDFKL-YSIGASAIYDFDTQSP   77 (155)
T ss_dssp             CEEEEEEEEEEEEEEECSSCEEEEECCEEEEEEEETT----EEEEEEEEEEEESSCCSSCCEE-EEEEEEEEEECCCSSS
T ss_pred             CCCEEEEEECEEEECCCCCCCCCCEEEEEEEEEECCC----EEEEEEEEEECCCCCCCCEEEE-EEEEEEEEEEECCCCC
T ss_conf             7642897864176134766778857489999998079----9999999995354678702578-8999999998436785


Q ss_pred             EEEEEEEEEEEEEEEECCCC-CCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC----CCCCEEEEEEEEEEC
Q ss_conf             77898854477644431345-556775204799734661004886799999999750565----566226999998539
Q gi|254780598|r  132 LLLYATVGPDVAQKYETGKA-GEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV----EGFYNTISLGVGMKF  205 (205)
Q Consensus       132 ~l~Y~~~G~a~~~~~~~~~~-~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~----~~~~~~~~~G~~ykF  205 (205)
                      +.||+++|+++++.+.+... .+.+++..++.+|+|+|| +|+|||++++||||+++++.    +.+.|.+++|++|||
T Consensus        78 ~~~Y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y-~i~~~~~~~~~y~y~~~~~~~~~~~~~~~~~~lGv~Y~F  155 (155)
T 1p4t_A           78 VKPYLGARLSLNRASVDLGGSDSFSQTSIGLGVLTGVSY-AVTPNVDLDAGYRYNYIGKVNTVKNVRSGELSAGVRVKF  155 (155)
T ss_dssp             EEEEEEEEEEEEEEEEEETTEEEECCCEEEEEEEEEEEE-EEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEC
T ss_pred             EEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEEC
T ss_conf             669999889999998201555655663273147317999-945899999999999766766575200228999999999


No 2  
>>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} (A:)
Probab=99.89  E-value=1.3e-21  Score=128.41  Aligned_cols=151  Identities=21%  Similarity=0.277  Sum_probs=119.9

Q ss_pred             CCCCCCCCCCCCCCCCCCC--------CCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCC---CCEEEE
Q ss_conf             1542100012233334466--------77777602689985464048379984510132155566662122---321489
Q gi|254780598|r   51 HDFNGPYAGLSALYNGSFG--------EEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSL---HGIGGS  119 (205)
Q Consensus        51 ~~w~G~y~g~~~g~~~~~~--------~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~---~~~~~~  119 (205)
                      .+|+++|+|+++|+.....        ....+++..++.+||+++.+   +++|+.+.+............   ......
T Consensus         2 ~~~~~~yvg~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~Gy~~~~~---~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (171)
T 1qjp_A            2 PKDNTWYTGAKLGWSQYHDTGLINNNGPTHENKLGAGAFGGYQVNPY---VGFEMGYDWLGRMPYKGSVENGAYKAQGVQ   78 (171)
T ss_dssp             CCTTEEEEEEEEEEEC-------------CCCEEEEEEEEEEEEETT---EEEEEEEEEEEECCC-------CEEEEEEE
T ss_pred             CCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCC---EEEEEEEEECCCCCCCCCCCCCCEEEEEEE
T ss_conf             86797999998622995165332677631589738999999991587---899999996585320134544404878899


Q ss_pred             EEEEEEEEECCCEEEEEEEEEEEEEEEECCC-CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC------CCC
Q ss_conf             9989754312767789885447764443134-555677520479973466100488679999999975056------556
Q gi|254780598|r  120 LRIRGGYEVSDSLLLYATVGPDVAQKYETGK-AGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK------VEG  192 (205)
Q Consensus       120 ~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~-~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~------~~~  192 (205)
                      +..+..+++.++++||+++|+++.+.+.+.. ....+++..++.+|+|++| .|+++|++++||||..+.+      .+.
T Consensus        79 ~~~~~~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y-~l~~~~~i~~e~~~~~~~~~~~~~~~~~  157 (171)
T 1qjp_A           79 LTAKLGYPITDDLDIYTRLGGMVWRADTYSNVYGKNHDTGVSPVFAGGVEY-AITPEIATRLEYQWTNNIGDAHTIGTRP  157 (171)
T ss_dssp             EEEEEEEESSSSEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEE-EEETTEEEEEEEEEEC------------
T ss_pred             EEEEEEECCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCCCC
T ss_conf             999999814776147678636899621100246514467432588827999-9359979999999997258765544111


Q ss_pred             CCEEEEEEEEEEC
Q ss_conf             6226999998539
Q gi|254780598|r  193 FYNTISLGVGMKF  205 (205)
Q Consensus       193 ~~~~~~~G~~ykF  205 (205)
                      +.+.+.+|++|||
T Consensus       158 ~~~~~~~G~~y~F  170 (171)
T 1qjp_A          158 DNGMLSLGVSYRF  170 (171)
T ss_dssp             --CEEEEEEEEEC
T ss_pred             CCCEEEEEEEEEC
T ss_conf             2458999999988


No 3  
>>1orm_A Outer membrane protein X; OMPX, trosy, DHPC, detergents, lipids, micelles; NMR {Escherichia coli} (A:)
Probab=99.85  E-value=2.6e-24  Score=142.35  Aligned_cols=132  Identities=20%  Similarity=0.240  Sum_probs=112.8

Q ss_pred             CCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCC-CCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECC
Q ss_conf             77776026899854640483799845101321555666-62122321489998975431276778988544776444313
Q gi|254780598|r   71 EAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLAD-NIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETG  149 (205)
Q Consensus        71 ~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~-~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~  149 (205)
                      ...++...++++||++|+.++++++|+.+.+.+..... .......+...+.++..|++++++.||+++|+++++.+.+.
T Consensus        15 ~~~~~~~~g~~~gy~~~f~~~~~~~E~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Y~~~G~~~~~~~~~~   94 (148)
T 1orm_A           15 QGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTE   94 (148)
T ss_dssp             TTTCCCCCCCCCCBCCCSSSCSCCCCBCCCCCCCCCCSSSCCSCCSCCCBCCBCCCCCCTTTCCCCCCEECBCCSCSCCS
T ss_pred             CCCCCCCCEEEEEECEECCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECC
T ss_conf             68788410699996989588169999999954466730346222212899998888960786469999867789844213


Q ss_pred             CC-CCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             45-556775204799734661004886799999999750565566226999998539
Q gi|254780598|r  150 KA-GEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       150 ~~-~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      .. .+.+++.+++.+|+|+|| .|+|+|++|+||||.++++.+  .+++++|++|||
T Consensus        95 ~~~~~~~~~~~~~~~g~G~~y-~l~~~~~~~~ey~~~~~~d~~--~~~~~~Gv~y~F  148 (148)
T 1orm_A           95 YPTYKNDTSDYGFSYGAGLQF-NPMENVALDFSYEQSRIRSVD--VGTWIAGVGYRF  148 (148)
T ss_dssp             SSSCCCCCCCCCCEECCCCCC-CCSSSCBCCCCCCCCCSSSCC--CCCCCCCCBCCC
T ss_pred             CCCCCCCCCEEEEEEECCEEE-ECCCCEEEEEEEEEEECCCCE--EEEEEEEEEEEC
T ss_conf             776445654043888431799-727887999999997469951--206999999989


No 4  
>>2f1v_A Outer membrane protein W; outer membrane protein beta barrel; 2.70A {Escherichia coli K12} PDB: 2f1t_A (A:)
Probab=99.85  E-value=4.3e-20  Score=120.66  Aligned_cols=150  Identities=13%  Similarity=0.036  Sum_probs=105.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCC-----------CCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCC---CCCCC----
Q ss_conf             154210001223333446677-----------777602689985464048379984510132155566---66212----
Q gi|254780598|r   51 HDFNGPYAGLSALYNGSFGEE-----------AHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLA---DNIHS----  112 (205)
Q Consensus        51 ~~w~G~y~g~~~g~~~~~~~~-----------~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~---~~~~~----  112 (205)
                      ++|+++|+++++|+.....+.           .++++.+++.+||+++..   +.+|+++.+......   .....    
T Consensus         1 ~~~~g~Yig~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gy~~~~~---~~ve~~~~~~~~~~~~~~~~~~~~~~~   77 (197)
T 2f1v_A            1 HEAGEFFMRAGSATVRPTEGAGGTLGSLGGFSVTNNTQLGLTFTYMATDN---IGVELLAATPFRHKIGTRATGDIATVH   77 (197)
T ss_dssp             -CTTCEEEEEEEEEEECCCC---------CCEECCEEEEEEEEEEESSSS---EEEEEEEESCEEEEEEETTTEEEEEEE
T ss_pred             CCCCCEEEEECEEEECCCCCCCCCCCCCCCEEECCCEEEEEEEEEEEECC---CEEEEEEEEEEEEEECCCCCCCCCCEE
T ss_conf             97778899946699886467886436766348678748868999995067---215667656100010124777522045


Q ss_pred             CCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCC---------CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEE
Q ss_conf             23214899989754312767789885447764443134---------555677520479973466100488679999999
Q gi|254780598|r  113 LHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGK---------AGEITPIAIGGTAGVGVEVGGLSESLVARLEYR  183 (205)
Q Consensus       113 ~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~---------~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~  183 (205)
                      ........+-+... ..+++.||+.+|+.+.+.+.+..         ....+++.+++.+|+|++| .|+++|++++|||
T Consensus        78 ~~~~~~~~~y~~~~-~~~~~~py~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y-~l~~~~~l~~eyr  155 (197)
T 2f1v_A           78 HLPPTLMAQWYFGD-ASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDY-LINRDWLVNMSVW  155 (197)
T ss_dssp             EECCEEEEEEECSC-TTCSEEEEEEEEEEEEEEEEEEECHHHHHTTEEEEEECCEEEEEEEEEEEE-ECSSSEEEEEEEE
T ss_pred             EECCEEEEEEEECC-CCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEE-ECCCCEEEEEEEE
T ss_conf             50424889998617-777588999732177899600015677654221244566383899734899-9079839999999


Q ss_pred             EEECCC--------------CCCCCEEEEEEEEEEC
Q ss_conf             975056--------------5566226999998539
Q gi|254780598|r  184 ASKYSK--------------VEGFYNTISLGVGMKF  205 (205)
Q Consensus       184 y~df~~--------------~~~~~~~~~~G~~ykF  205 (205)
                      |.++.+              ++.+.+.+++|+.|||
T Consensus       156 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Y~F  191 (197)
T 2f1v_A          156 YMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF  191 (197)
T ss_dssp             EECCEEEEEEEESSCCCCEEEECCCEEEEEEEEEEE
T ss_pred             EEECCCCEEEECCCCCCCEEEEECCEEEEEEEEEEE
T ss_conf             997455157842886311048727138999999996


No 5  
>>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae} (A:)
Probab=99.85  E-value=2.6e-19  Score=116.66  Aligned_cols=152  Identities=22%  Similarity=0.286  Sum_probs=116.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCC-------------CCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCC---C
Q ss_conf             11542100012233334466-------------7777760268998546404837998451013215556666212---2
Q gi|254780598|r   50 RHDFNGPYAGLSALYNGSFG-------------EEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHS---L  113 (205)
Q Consensus        50 ~~~w~G~y~g~~~g~~~~~~-------------~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~---~  113 (205)
                      ...++++|++..+|+.....             ...++.+..|+.+||+++..   +++|+++.+.+.........   .
T Consensus        13 ~~~~~~~yig~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gY~~~~~---~~ve~~~~~~~~~~~~~~~~~~~~   89 (216)
T 2k0l_A           13 APKDNTWYAGGKLGWSQYHDTGFYGNGFQNNNGPTRNDQLGAGAFGGYQVNPY---LGFEMGYDWLGRMAYKGSVDNGAF   89 (216)
T ss_dssp             CSCCCCEEEEEEEECSCCCCSCCCCCSCCCSCCCSCCCCCEEEEEEEEEEETT---EEEEEEEEECCCCCCCCSSCCCSS
T ss_pred             CCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCC---CCEEEEEEECCCCCCCCCCCCCCE
T ss_conf             78779899999982188606643256654566410378668999999785144---434861465042012222457626


Q ss_pred             CCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCC------CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEC
Q ss_conf             3214899989754312767789885447764443134------5556775204799734661004886799999999750
Q gi|254780598|r  114 HGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGK------AGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKY  187 (205)
Q Consensus       114 ~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~------~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df  187 (205)
                      ......+.++..|.+++++.+|+.+|+.+.+.+.+..      ....+++..++.+|+|++| .|+++|++++||||..+
T Consensus        90 ~~~~~~~~~~y~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y-~l~~~~~l~~~~~y~~~  168 (216)
T 2k0l_A           90 KAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADSKGNYASTGVSRSEHDTGVSPVFAGGVEW-AVTRDIATRLEYQWVNN  168 (216)
T ss_dssp             CCCEEEEEEEEEEESSSSEEEEEEEEEEEEECCCCCSCCCSSSCCCCCCEEEEEEEEEEEEE-ECSSSCEEEEEESSCSS
T ss_pred             EEEEEEEEEEEEEEEECCCEEEEEEEEEEEEECCEEECCCCCCCCCCCCCCCCCEECCEEEE-EECCCEEEEEEEEEEEC
T ss_conf             88878899999986202411777744789860111201457632113456303135123799-83699799999999953


Q ss_pred             CC------CCCCCEEEEEEEEEEC
Q ss_conf             56------5566226999998539
Q gi|254780598|r  188 SK------VEGFYNTISLGVGMKF  205 (205)
Q Consensus       188 ~~------~~~~~~~~~~G~~ykF  205 (205)
                      .+      .+.+.+.+++|++|||
T Consensus       169 ~~~~~~~~~~~~~~~~~~Gl~Y~F  192 (216)
T 2k0l_A          169 IGDAGTVGTRPDNGMLSLGVSYRF  192 (216)
T ss_dssp             CCCCSCCCCSSCSCCCEEEEEEEC
T ss_pred             CCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             686555553233678999999999


No 6  
>>2jmm_A Outer membrane protein A; NMR {Escherichia coli} (A:)
Probab=99.84  E-value=1e-19  Score=118.74  Aligned_cols=142  Identities=18%  Similarity=0.203  Sum_probs=114.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCE
Q ss_conf             42100012233334466777776026899854640483799845101321555666621223214899989754312767
Q gi|254780598|r   53 FNGPYAGLSALYNGSFGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDSL  132 (205)
Q Consensus        53 w~G~y~g~~~g~~~~~~~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~~  132 (205)
                      ..++|+|+++|+...+   ++++...++.+||++...   +++|+.+.+......+   . ..+...+.++.-+++.+++
T Consensus         4 ~~~~yig~~~g~~~~~---~~~~~~~g~~~gy~~~~~---~~~e~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~   73 (156)
T 2jmm_A            4 DNTWYTGAKLGWSQYS---RENQLGAGAFGGYQVNPY---VGFEMGYDWLGRMPRK---A-QGVQLTAKLGYPKLGTDDL   73 (156)
T ss_dssp             SSEEEEEEEEEEETTC---CSSCCEEEEEEEEECSSS---EEEEEEEEEECSSSSC---E-EEEEEEEEEEECTTCTTTC
T ss_pred             CCCEEEEEECCCEEEC---CCCCCEEEEEEEEEECCC---EEEEEEEEECCCCCEE---E-ECCEEEEEEEEEECCCCCE
T ss_conf             7968797871212143---789858789998870787---8999978834666415---4-2321546789997036854


Q ss_pred             EEEEEEEEEEEEEEECCC----CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEC-CCCCCCCEEEEEEEEEEC
Q ss_conf             789885447764443134----5556775204799734661004886799999999750-565566226999998539
Q gi|254780598|r  133 LLYATVGPDVAQKYETGK----AGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKY-SKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       133 l~Y~~~G~a~~~~~~~~~----~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df-~~~~~~~~~~~~G~~ykF  205 (205)
                      .||+++|+.+.+.+.+..    ....+++.+++.+|+|++| .|+++|++++||||... .+.+.+.+.+++|++|||
T Consensus        74 ~~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y-~l~~~~~l~~e~~~~~~~~d~~~~~~~~~~Gl~Y~F  150 (156)
T 2jmm_A           74 DIYTRLGGMVWRADTSDKDGNGYISAAEASVSPVFAGGVEY-VIRRRITPEIATRLEYQWTNNASDNGMLSLGVSYRF  150 (156)
T ss_dssp             EEEEEEEEEEESSBCCCCCSSSCCCCCBCCCCEEEEEEEEE-ECSSSCSSSEEEEEEEEEESSSSCEEEEEEEEEEES
T ss_pred             EEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEE-EECCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEC
T ss_conf             29898314699834432036774333667628779989999-864264734379999998268887777999899998


No 7  
>>2f1c_X OMPG, outer membrane protein G; beta barrel; HET: C8E; 2.30A {Escherichia coli K12} PDB: 2jqy_A 2iwv_A* 2iww_A* (X:)
Probab=99.14  E-value=6.7e-09  Score=63.15  Aligned_cols=51  Identities=16%  Similarity=0.101  Sum_probs=41.1

Q ss_pred             CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC---CCCCCEEEEEEEEEEC
Q ss_conf             677520479973466100488679999999975056---5566226999998539
Q gi|254780598|r  154 ITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK---VEGFYNTISLGVGMKF  205 (205)
Q Consensus       154 ~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~---~~~~~~~~~~G~~ykF  205 (205)
                      ..+.+..+.+++|+|| .++++|.+|+||+|.+-..   ...+.+.+++|++|||
T Consensus       227 ~~~~~d~~~~~~G~ey-~~~~~~~lr~gy~y~~~~~~~~~~~~~~~~~lG~~y~f  280 (286)
T 2f1c_X          227 EREGHDFNRVGLFYGY-DFQNGLSVSLEYAFEWQDHDEGDSDKFHYAGVGVNYSF  280 (286)
T ss_dssp             -----CCEEEEEEEEE-ECSSSEEEEEEEEEEECC------CCEEEEEEEEEEEE
T ss_pred             EECCCCCEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEE
T ss_conf             1405772499999963-40796699999999972554788857894788678998


No 8  
>>1uyn_X NALP; autotransporter, translocator domain, membrane protein, outer membrane, beta-domain, beta-barrel; HET: CXE; 2.6A {Neisseria meningitidis} (X:)
Probab=98.86  E-value=2.1e-07  Score=55.46  Aligned_cols=128  Identities=21%  Similarity=0.218  Sum_probs=83.1

Q ss_pred             CCEEEEEEEEEEECC-CEEEEEEEEEEECCCCCCC--------CCCC----CCCEEEEEEEEEEEEECCCEEEEEEEEEE
Q ss_conf             602689985464048-3799845101321555666--------6212----23214899989754312767789885447
Q gi|254780598|r   75 NAGGSIFAGYNVEDS-CIMYGVEGDVRYTVPVLAD--------NIHS----LHGIGGSLRIRGGYEVSDSLLLYATVGPD  141 (205)
Q Consensus        75 ~~~~G~~~GYn~q~~-~~V~G~e~d~~~~~~~~~~--------~~~~----~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a  141 (205)
                      .....+.+||+|+.+ ++.+...+.+.+.....+.        ....    .......+..|+.+.+...+.++..+++-
T Consensus       154 ~~~~~~~~gy~~~~~~~~~l~P~~~l~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~  233 (308)
T 1uyn_X          154 LMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWSGNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVE  233 (308)
T ss_dssp             EEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESCTTCCEECCEEEEEEEEEEEEEEEEECSSSEEEEEEEEEE
T ss_pred             EEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCEEEECCCEEEEECCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEE
T ss_conf             79999999899982696599999875777862455075077416886256502666876899975215516798998999


Q ss_pred             EEEEEEC--------------CCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             7644431--------------345556775204799734661004886799999999750565566226999998539
Q gi|254780598|r  142 VAQKYET--------------GKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       142 ~~~~~~~--------------~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      ..-...+              ......+..+....+++|+|+ .++++|++.++|.+.-=.+.  ..+.+.+|+.|||
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~~~~~~~~~--~~~~~~~gl~~~F  308 (308)
T 1uyn_X          234 RDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADV-EFGNGWNGLARYSYAGSKQY--GNHSGRVGVGYRF  308 (308)
T ss_dssp             EESSCCCCCCCC-----------------CCEEEEEEEEEEE-EEETTEEEEEEEEEEEETTE--EEEEEEEEEEEEC
T ss_pred             EECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEE-EECCCEEEEEEEEEEECCCC--CEEEEEEEEEEEC
T ss_conf             970689841699996278751577435788746999996999-98799899999999977785--1189999999989


No 9  
>>2qom_A Serine protease ESPP; outer membrane protein, beta-barrel, beta-domain, autotransporter, hydrolase, plasmid, secreted, transmembrane; 2.66A {Escherichia coli O157} (A:)
Probab=98.80  E-value=3e-07  Score=54.67  Aligned_cols=150  Identities=15%  Similarity=0.124  Sum_probs=94.7

Q ss_pred             CCCCCCCCCCCCCCCCC------------CCCCCCEEEEEEEEEEECC-CEEEEEEEEEEECCCCCCC-----C---CCC
Q ss_conf             21000122333344667------------7777602689985464048-3799845101321555666-----6---212
Q gi|254780598|r   54 NGPYAGLSALYNGSFGE------------EAHHNAGGSIFAGYNVEDS-CIMYGVEGDVRYTVPVLAD-----N---IHS  112 (205)
Q Consensus        54 ~G~y~g~~~g~~~~~~~------------~~~~~~~~G~~~GYn~q~~-~~V~G~e~d~~~~~~~~~~-----~---~~~  112 (205)
                      .++|+...++++....+            .....+...+.+||++... .+.+-..+.+.|.....+.     .   ..+
T Consensus        92 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~l~P~~~l~y~~~~~~~~~e~~~~~~l~~  171 (285)
T 2qom_A           92 SGAYIDLIGKYVHHDNEYTATFAGLGTRDYSTHSWYAGAEAGYRYHVTEDAWIEPQAELVYGSVSGKQFAWKDQGMHLSM  171 (285)
T ss_dssp             TSEEEEEEEEEEEEEEEEEC---CCCCEEEEEEEEEEEEEEEECEESSSSEEEEEEEEEEEEEEEEEEC--------CCC
T ss_pred             CCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCCCCCCCCCCCEE
T ss_conf             65030044677886330143026643222233218874672167980367178678999999996477323577433133


Q ss_pred             ----CCCEEEEEEEEEEEEECC---CEEEEEEEEEEEEEEEECC--------CCCCCCCCCEEEEEEEEEEEECCCCCEE
Q ss_conf             ----232148999897543127---6778988544776444313--------4555677520479973466100488679
Q gi|254780598|r  113 ----LHGIGGSLRIRGGYEVSD---SLLLYATVGPDVAQKYETG--------KAGEITPIAIGGTAGVGVEVGGLSESLV  177 (205)
Q Consensus       113 ----~~~~~~~~~~r~Gy~~~~---~~l~Y~~~G~a~~~~~~~~--------~~~~~~~~~~g~~~G~Gvey~~it~~~~  177 (205)
                          ...+...+.+|+.+.+..   .+.+|+.+++...-.....        .....+..+....+++|+++ .++++|.
T Consensus       172 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~  250 (285)
T 2qom_A          172 KDKDYNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLLANGETVLRDASGEKRIKGEKDSRMLMSVGLNA-EIRDNVR  250 (285)
T ss_dssp             EEEEEEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEEETCTTBCCCSSSSCCSSSSEEEEEEEEEEEEE-EETTTEE
T ss_pred             CCCCEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEECCCCCEEEEECCCCCEEECCCCCCEEEEEEEEEE-EECCCEE
T ss_conf             046400688875435301130688079999999999721788528971345413503688867999998999-9899999


Q ss_pred             EEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             9999999750565566226999998539
Q gi|254780598|r  178 ARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       178 ~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      +.++|.+.-- ..+...+.+++|+.|+|
T Consensus       251 ~~~~~~~~~~-~~~~~~~~~~lgl~y~F  277 (285)
T 2qom_A          251 FGLEFEKSAF-GKYNVDNAVNANFRYSF  277 (285)
T ss_dssp             ECEEEEEEES-SSSEEEEEEEECCEEEE
T ss_pred             EEEEEEEEEC-CCCCEEEEEEEEEEEEE
T ss_conf             9999999975-88844079999999998


No 10 
>>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell outer membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa} (X:322-632)
Probab=98.58  E-value=6.5e-06  Score=47.83  Aligned_cols=128  Identities=16%  Similarity=0.130  Sum_probs=77.7

Q ss_pred             CCEEEEEEEEEEEC---CCEEEEEEEEEEECCCCCCC---------CCCCCCCE----EEEEEEEEEEEECCCEEEEEEE
Q ss_conf             60268998546404---83799845101321555666---------62122321----4899989754312767789885
Q gi|254780598|r   75 NAGGSIFAGYNVED---SCIMYGVEGDVRYTVPVLAD---------NIHSLHGI----GGSLRIRGGYEVSDSLLLYATV  138 (205)
Q Consensus        75 ~~~~G~~~GYn~q~---~~~V~G~e~d~~~~~~~~~~---------~~~~~~~~----~~~~~~r~Gy~~~~~~l~Y~~~  138 (205)
                      .....+.+||++.+   +++.+-.++.+.|.....+.         ........    ...+..|+.+.+...+.+++.+
T Consensus       154 ~~~~~~~~g~~~~~~~~~~~~i~P~~~l~~~~~~~~~~~E~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  233 (311)
T 3kvn_X          154 LWAFSARLGYDIAQQADSPWHLSPFVSADYARVEVDGYSEKGASATALDYDDQKRSSKRLGAGLQGKYAFGSDTQLFAEY  233 (311)
T ss_dssp             EEEEEEEEEECSCSCTTCSEEEEEEEEEEEEEEEECCCBCSSCCTTCEEECCEEEEEEEEEEEEEEEEESSSSEEEEEEE
T ss_pred             EEEEEEEECEEEECCCCCCEEEEEEEEEEEEEEECCCEEECCCCCCCEEECCCCCCEEEEEEEEEEEEECCCCEEEEEEE
T ss_conf             99999993567502566868999999999999853753541787200698166420899999999999618826899999


Q ss_pred             EEEEEEEEEC--------C------CCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEE
Q ss_conf             4477644431--------3------4555677520479973466100488679999999975056556622699999853
Q gi|254780598|r  139 GPDVAQKYET--------G------KAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMK  204 (205)
Q Consensus       139 G~a~~~~~~~--------~------~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~yk  204 (205)
                      ++...-....        .      .....+..+....+++|+++ .+++++.+.++|.+..-.+.+  .+.+.+|+.|+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~  310 (311)
T 3kvn_X          234 AHEREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQ-KLAPELSLRGGYNWRKGEDDT--QQSVSLALSLD  310 (311)
T ss_dssp             EEEEESCCCCCEEEEEETTCTTCCEEEECCCCCSEEEEEEEEEEE-EEETTEEEEEEEEEEEETTEE--EEEEEEEEEEE
T ss_pred             EEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEE-EECCCEEEEEEEEEEECCCCE--EEEEEEEEEEE
T ss_conf             998220589731799997378853788445578868999999999-988988999999999888968--99999999998


Q ss_pred             C
Q ss_conf             9
Q gi|254780598|r  205 F  205 (205)
Q Consensus       205 F  205 (205)
                      |
T Consensus       311 F  311 (311)
T 3kvn_X          311 F  311 (311)
T ss_dssp             C
T ss_pred             C
T ss_conf             9


No 11 
>>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} (A:)
Probab=98.06  E-value=0.00039  Score=38.67  Aligned_cols=46  Identities=20%  Similarity=0.180  Sum_probs=37.3

Q ss_pred             CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             75204799734661004886799999999750565566226999998539
Q gi|254780598|r  156 PIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       156 ~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      ....-..+.+|++| .+++++.+-+||.|.+..+.+   +.+.|||-|+|
T Consensus       256 ~~~~~~~~~~g~~Y-~lsk~~~~y~~~~~~~~~~~~---~~~~vG~r~~F  301 (301)
T 2por_A          256 TIDDVTYYGLGASY-DLGGGASIVGGIADNDLPNSD---MVADLGVKFKF  301 (301)
T ss_dssp             TTEEEEEEEEEEEE-EEETTEEEEEEEEEECSSSCC---CEEEEEEEEEC
T ss_pred             CCCCEEEEEEEEEE-ECCCCEEEEEEEEEEECCCCC---EEEEEEEEEEC
T ss_conf             88862699999999-889997999999999668997---37999869989


No 12 
>>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} (A:)
Probab=98.05  E-value=0.00041  Score=38.56  Aligned_cols=80  Identities=11%  Similarity=0.164  Sum_probs=51.6

Q ss_pred             EEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC----CCCE
Q ss_conf             998975431276778988544776444313455567752047997346610048867999999997505655----6622
Q gi|254780598|r  120 LRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE----GFYN  195 (205)
Q Consensus       120 ~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~----~~~~  195 (205)
                      ...-+.|.+++.+.+++  ++...+.+.....   .....-..+.+|++| .+++++.+.+||.|.+..+..    .+.+
T Consensus       247 ~~~~a~y~~~~~~~~~~--~y~~~~~~~~~~~---~~~~~~~~~~~g~~Y-~~sk~~~~ya~~~~~~~~~~~~~~~~~~~  320 (330)
T 1pho_A          247 FEAVAQYQFDFGLRPSL--GYVLSKGKDIEGI---GDEDLVNYIDVGATY-YFNKNMSAFVDYKINQLDSDNKLNINNDD  320 (330)
T ss_dssp             EEEEEEECCSSSEEEEE--EEEEEEEESBTTT---BCCEEEEEEEEEEEE-ESSSSEEEEEEEEEECCCSSCTTCCCCCC
T ss_pred             EEEEEEEEECCCEEEEE--EEEEEECCCCCCC---CCCCCEEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCCCCC
T ss_conf             99999999545517899--9999971345677---887615999999999-90799899999999822477667766688


Q ss_pred             EEEEEEEEEC
Q ss_conf             6999998539
Q gi|254780598|r  196 TISLGVGMKF  205 (205)
Q Consensus       196 ~~~~G~~ykF  205 (205)
                      .+.+||-|+|
T Consensus       321 ~~~vG~r~~F  330 (330)
T 1pho_A          321 IVAVGMTYQF  330 (330)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEC
T ss_conf             9999999989


No 13 
>>3prn_A Porin; integral membrane protein, pore eyelet mutant; HET: C8E; 1.90A {Rhodopseudomonas blastica} (A:)
Probab=97.93  E-value=0.00053  Score=37.99  Aligned_cols=38  Identities=16%  Similarity=0.291  Sum_probs=32.2

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             99734661004886799999999750565566226999998539
Q gi|254780598|r  162 TAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      .+.+|+|| .+++++.+-+||.+.+..     -+.+.|||-|+|
T Consensus       252 ~~~~g~~Y-~l~k~~~~yae~~~~~~~-----~~~~~vG~r~~F  289 (289)
T 3prn_A          252 AYGIGADY-QFAEGVKVSGSVQSGFAN-----ETVADVGVRFDF  289 (289)
T ss_dssp             EEEEEEEE-EEETTEEEEEEEEECTTC-----CEEEEEEEEEEC
T ss_pred             EEEEEEEE-ECCCCEEEEEEEEEEECC-----CCEEEEEEEEEC
T ss_conf             89999999-848985999999997089-----825705757769


No 14 
>>2j1n_A Outer membrane protein C; beta-barrel, ION transport, non-specific porin, general porin, osmoporin, transmembrane transport; HET: D12; 2.0A {Escherichia coli} PDB: 2j4u_P 2zle_D 2ixx_A* 2ixw_A* 1osm_A* (A:)
Probab=97.92  E-value=0.00072  Score=37.29  Aligned_cols=46  Identities=17%  Similarity=0.267  Sum_probs=37.7

Q ss_pred             EEEEEEEEEEEECCCCCEEEEEEEEEEECCCC-------CCCCEEEEEEEEEEC
Q ss_conf             04799734661004886799999999750565-------566226999998539
Q gi|254780598|r  159 IGGTAGVGVEVGGLSESLVARLEYRASKYSKV-------EGFYNTISLGVGMKF  205 (205)
Q Consensus       159 ~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~-------~~~~~~~~~G~~ykF  205 (205)
                      .--.+-+|++| .+++++.+.+||.|.+..+.       ..+.+.+.|||-|+|
T Consensus       294 ~~~~~~~g~~Y-~~sk~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~vGlr~~F  346 (346)
T 2j1n_A          294 ILKYVDVGATY-YFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF  346 (346)
T ss_dssp             EEEEEEEEEEE-ESSSSEEEEEEEEEECCCCCHHHHHHTCCCSCEEEEEEEEEC
T ss_pred             CEEEEEEEEEE-ECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             16999999999-816998999999985356642233467766778999999989


No 15 
>>1i78_A Protease VII; integral outer membrane protein, beta barrel, hydrolase; HET: BOG; 2.60A {Escherichia coli K12} (A:)
Probab=97.92  E-value=0.00073  Score=37.29  Aligned_cols=84  Identities=11%  Similarity=0.072  Sum_probs=52.2

Q ss_pred             EEEEEEEEECCCEEEEEEEEE-EEEEEEECC---------CCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC
Q ss_conf             998975431276778988544-776444313---------4555677520479973466100488679999999975056
Q gi|254780598|r  120 LRIRGGYEVSDSLLLYATVGP-DVAQKYETG---------KAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK  189 (205)
Q Consensus       120 ~~~r~Gy~~~~~~l~Y~~~G~-a~~~~~~~~---------~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~  189 (205)
                      +.+..-|.+ +++-+.+.+=+ .+.+.+...         ...+..+...++.+.+-+.| .+||+|++.+|-+|..+..
T Consensus       181 iGl~g~y~~-~~~~l~~~~~ys~~v~~~~~D~H~lR~~~~~~~~~~~~~~g~~l~~~~~Y-~vt~~~si~v~g~y~~~~~  258 (297)
T 1i78_A          181 IGLTGSYRY-EDFELGGTFKYSGWVESSDNDEHYDPKGRITYRSKVKDQNYYSVAVNAGY-YVTPNAKVYVEGAWNRVTN  258 (297)
T ss_dssp             EEEEEEEEE-TTEEEEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEEEE-EEETTEEEEEEEEEEEEEE
T ss_pred             ECCCCCEEE-EEEECCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCE-EECCCCEEEEEEHHHHHCC
T ss_conf             312242253-30031635764113563777434588762676301145743789960656-8768844998401232003


Q ss_pred             C-----------------------CCCCEEEEEEEEEEC
Q ss_conf             5-----------------------566226999998539
Q gi|254780598|r  190 V-----------------------EGFYNTISLGVGMKF  205 (205)
Q Consensus       190 ~-----------------------~~~~~~~~~G~~ykF  205 (205)
                      -                       +...-++++|+-|||
T Consensus       259 ~~g~t~~~~~~~g~~~~~~~~ag~~~~~~~~s~Gl~y~F  297 (297)
T 1i78_A          259 KKGNTSLYDHNNNTSDYSKNGAGIENYNFITTAGLKYTF  297 (297)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEEEEEC
T ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCEEECC
T ss_conf             678722031679832013477763222416621312229


No 16 
>>2zfg_A Outer membrane protein F; OMPF porin, ordered waters, ION transport, phage recognition, transmembrane, transport; HET: C8E; 1.59A {Escherichia coli} (A:)
Probab=97.79  E-value=0.0012  Score=36.11  Aligned_cols=77  Identities=12%  Similarity=0.156  Sum_probs=48.3

Q ss_pred             EEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC----CCCCEEEE
Q ss_conf             97543127677898854477644431345556775204799734661004886799999999750565----56622699
Q gi|254780598|r  123 RGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV----EGFYNTIS  198 (205)
Q Consensus       123 r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~----~~~~~~~~  198 (205)
                      -+.|.+++.+.+.+.  +.+.+.+.....   .....-..+.+|++| .+++++.+.+||.|.+..+.    +.+.+.+.
T Consensus       260 ~~~y~~~~~~~~~~~--y~~~~~~~~~~~---~~~~~~~~~~vg~~Y-~lsk~~~~y~~~~~~~~~~~~~~~~~~~~~~~  333 (340)
T 2zfg_A          260 VAQYQFDFGLRPSIA--YTKSKAKDVEGI---GDVDLVNYFEVGATY-YFNKNMSTYVDYIINQIDSDNKLGVGSDDTVA  333 (340)
T ss_dssp             EEEECCTTSEEEEEE--EEEEEEEEETTT---EEEEEEEEEEEEEEE-EEETTEEEEEEEEEECCCTTCTTCCCCBCEEE
T ss_pred             EEEEEECCCEEEEEE--EEEEECCCCCCC---CCCCCEEEEEEEEEE-EECCCEEEEEEEEEECCCCCCCCCCCCCCEEE
T ss_conf             999984677378999--999960355677---776623899999999-91699899999999523577667776687999


Q ss_pred             EEEEEEC
Q ss_conf             9998539
Q gi|254780598|r  199 LGVGMKF  205 (205)
Q Consensus       199 ~G~~ykF  205 (205)
                      +||-|+|
T Consensus       334 ~G~r~~F  340 (340)
T 2zfg_A          334 VGIVYQF  340 (340)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
T ss_conf             9999989


No 17 
>>2erv_A Hypothetical protein PAER03002360; beta barrel, outer membrane, enzyme, hydrolase, lipopolysaccharide, membrane protein; HET: CXE; 2.00A {Pseudomonas aeruginosa} (A:)
Probab=97.58  E-value=0.0027  Score=34.33  Aligned_cols=114  Identities=12%  Similarity=-0.032  Sum_probs=66.0

Q ss_pred             CEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEE
Q ss_conf             37998451013215556666212232148999897543127677898854477644431345556775204799734661
Q gi|254780598|r   90 CIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEV  169 (205)
Q Consensus        90 ~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey  169 (205)
                      .+-+-.+.++...-...+...........+...|..+.. .+.-+|..+|....-.........+-.+..-+...+|+.|
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~e~g~G~~~~~~~~~~~~~~G~~f~F~~~lglgy  112 (150)
T 2erv_A           34 TGRLTGYWDAGYTYWEGGDEGAGKHSLSFAPVFVYEFAG-DSIKPFIEAGIGVAAFSGTRVGDQNLGSSLNFEDRIGAGL  112 (150)
T ss_dssp             TEEEEEEEEEEEEEECCCSSCSSEEEEEEEEEEEEEECC-SSEEEEEEEEEEEEEESSSEETTEECSCSEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEECC-CCCCEEEEEEECEEEEECCCCCCCCCCCEEEEEEEEEEEE
T ss_conf             853889987888883069966862078567899999469-9836799941044987042027987675498734278899


Q ss_pred             ECCCCCEEEEEEEEEEEC---CCCCCCCEEEEEEEEEEC
Q ss_conf             004886799999999750---565566226999998539
Q gi|254780598|r  170 GGLSESLVARLEYRASKY---SKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       170 ~~it~~~~~r~EY~y~df---~~~~~~~~~~~~G~~ykF  205 (205)
                       .++++|.+.+-|+|..=   .+....+|++.+.++|+|
T Consensus       113 -~~~~~~~lgl~~~H~SNa~~~~~NpG~n~~~l~~g~~f  150 (150)
T 2erv_A          113 -KFANGQSVGVRAIHYSNAGLKQPNDGIESYSLFYKIPI  150 (150)
T ss_dssp             -EETTSCEEEEEEEEEECTTSSTTCCCEEEEEEEEEEEC
T ss_pred             -EECCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCC
T ss_conf             -96799889999998505898989999206889996659


No 18 
>>2f1c_X OMPG, outer membrane protein G; beta barrel; HET: C8E; 2.30A {Escherichia coli K12} PDB: 2jqy_A 2iwv_A* 2iww_A* (X:)
Probab=97.44  E-value=0.0042  Score=33.38  Aligned_cols=110  Identities=9%  Similarity=0.031  Sum_probs=70.7

Q ss_pred             CCCCCCEEEEEEEEEEECC-CEEEEEEEEEEECCCCCC--CCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEE
Q ss_conf             7777602689985464048-379984510132155566--6621223214899989754312767789885447764443
Q gi|254780598|r   71 EAHHNAGGSIFAGYNVEDS-CIMYGVEGDVRYTVPVLA--DNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYE  147 (205)
Q Consensus        71 ~~~~~~~~G~~~GYn~q~~-~~V~G~e~d~~~~~~~~~--~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~  147 (205)
                      .........+...+.+... .+-+|+...+...+.+..  ............+.+-+.|.++|++.+.+.+.+.+.+.+.
T Consensus        62 ~~~~~~~p~~~~~~~i~~~~~~g~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~d~lsig~~~~~~~~~~~~  141 (286)
T 2f1c_X           62 RGTWFDRPELEVHYQFLENDDFSFGLTGGFRNYGYHYVDEPGKDTANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFANDL  141 (286)
T ss_dssp             CCCEEECCEEEEEEEEEECSSEEEEEEEEEEEEEEECCSCSSCSEEEEEEEEEEEEEEEESSSSEEEEEEEEEEEEESSH
T ss_pred             CCCCCEEEEEEEEEEEECCCCEEEECCEEEEEEECCCCCCCCCCCCCCCEEEEEECEEEECCCCEEEEEEEEEEEECCCC
T ss_conf             56401368999899986188738821249802531367885556444202776333089814775997147999972644


Q ss_pred             CCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEE
Q ss_conf             13455567752047997346610048867999999997
Q gi|254780598|r  148 TGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRAS  185 (205)
Q Consensus       148 ~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~  185 (205)
                      ...    +....++.+.+|+-| .++++|.+.+.|++.
T Consensus       142 ~~~----~~~~~~~g~~~G~~y-~~~~~~~lg~~y~~~  174 (286)
T 2f1c_X          142 NTT----GYADTRVETETGLQY-TFNETVALRVNYYLE  174 (286)
T ss_dssp             HHH----CCCSEEEEEEEEEEE-ECSSSBEEEEEEEEE
T ss_pred             CCC----CCCCCEEEEECCEEE-EECCCCEEEEEEEEE
T ss_conf             678----877623897247689-988985799999863


No 19 
>>2jmm_A Outer membrane protein A; NMR {Escherichia coli} (A:)
Probab=96.69  E-value=0.013  Score=30.92  Aligned_cols=88  Identities=10%  Similarity=-0.028  Sum_probs=44.1

Q ss_pred             CCCCEEEEEEEEEEECC-C--EEEEEEEEEEECCCCCC----CCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEE
Q ss_conf             77602689985464048-3--79984510132155566----66212232148999897543127677898854477644
Q gi|254780598|r   73 HHNAGGSIFAGYNVEDS-C--IMYGVEGDVRYTVPVLA----DNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQK  145 (205)
Q Consensus        73 ~~~~~~G~~~GYn~q~~-~--~V~G~e~d~~~~~~~~~----~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~  145 (205)
                      .+.....+.+.|++... +  ..+++-..+...+.+..    ........+...+.+.+.|.+++++.+.+..-+.....
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y~l~~~~~l~~e~~~~~~~~  133 (156)
T 2jmm_A           54 AQGVQLTAKLGYPKLGTDDLDIYTRLGGMVWRADTSDKDGNGYISAAEASVSPVFAGGVEYVIRRRITPEIATRLEYQWT  133 (156)
T ss_dssp             EEEEEEEEEEEECTTCTTTCEEEEEEEEEEESSBCCCCCSSSCCCCCBCCCCEEEEEEEEEECSSSCSSSEEEEEEEEEE
T ss_pred             EECCEEEEEEEEEECCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEE
T ss_conf             42321546789997036854298983146998344320367743336676287799899998642647343799999982


Q ss_pred             EECCCCCCCCCCCEEEEEEEEEEE
Q ss_conf             431345556775204799734661
Q gi|254780598|r  146 YETGKAGEITPIAIGGTAGVGVEV  169 (205)
Q Consensus       146 ~~~~~~~~~~~~~~g~~~G~Gvey  169 (205)
                      +.         ...-..+.+|+.|
T Consensus       134 d~---------~~~~~~~~~Gl~Y  148 (156)
T 2jmm_A          134 NN---------ASDNGMLSLGVSY  148 (156)
T ss_dssp             SS---------SSCEEEEEEEEEE
T ss_pred             CC---------CCCCCEEEEEEEE
T ss_conf             68---------8877779998999


No 20 
>>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} (A:)
Probab=96.42  E-value=0.03  Score=29.01  Aligned_cols=19  Identities=5%  Similarity=-0.025  Sum_probs=8.2

Q ss_pred             EEEEEEEEEEECCCEEEEE
Q ss_conf             8999897543127677898
Q gi|254780598|r  118 GSLRIRGGYEVSDSLLLYA  136 (205)
Q Consensus       118 ~~~~~r~Gy~~~~~~l~Y~  136 (205)
                      ..+.+-+.|.+++++.+.+
T Consensus       121 ~~~g~G~~y~l~~~~~i~~  139 (171)
T 1qjp_A          121 PVFAGGVEYAITPEIATRL  139 (171)
T ss_dssp             EEEEEEEEEEEETTEEEEE
T ss_pred             EEEEEEEEEEECCCEEEEE
T ss_conf             5888279999359979999


No 21 
>>2qom_A Serine protease ESPP; outer membrane protein, beta-barrel, beta-domain, autotransporter, hydrolase, plasmid, secreted, transmembrane; 2.66A {Escherichia coli O157} (A:)
Probab=96.06  E-value=0.059  Score=27.47  Aligned_cols=112  Identities=13%  Similarity=0.095  Sum_probs=52.5

Q ss_pred             CCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCC----C-CCCCCCEEEEEEEEEEEEE--CCCEE--EEEEEEEEEE
Q ss_conf             776026899854640483799845101321555666----6-2122321489998975431--27677--8988544776
Q gi|254780598|r   73 HHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLAD----N-IHSLHGIGGSLRIRGGYEV--SDSLL--LYATVGPDVA  143 (205)
Q Consensus        73 ~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~----~-~~~~~~~~~~~~~r~Gy~~--~~~~l--~Y~~~G~a~~  143 (205)
                      .+....++++.|+++...++- .-+.+.+.+.+...    + ...-..+...+..++||.+  ++.+.  ||+.+-|...
T Consensus        77 ~~~~~~g~Y~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~l~P~~~l~y~~~  155 (285)
T 2qom_A           77 TKSVGAGLYASAMFDSGAYID-LIGKYVHHDNEYTATFAGLGTRDYSTHSWYAGAEAGYRYHVTEDAWIEPQAELVYGSV  155 (285)
T ss_dssp             EEEEEEEEEEEEECTTSEEEE-EEEEEEEEEEEEEC---CCCCEEEEEEEEEEEEEEEECEESSSSEEEEEEEEEEEEEE
T ss_pred             EEEEEEEEEEEEECCCCCCEE-EEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEEE
T ss_conf             344678999998517650300-4467788633014302664322223321887467216798036717867899999999


Q ss_pred             EEEE---CCC-----CCCCCCCCEEEEEEEEEEEECCCC-----CEEEEEEEEEEE
Q ss_conf             4443---134-----555677520479973466100488-----679999999975
Q gi|254780598|r  144 QKYE---TGK-----AGEITPIAIGGTAGVGVEVGGLSE-----SLVARLEYRASK  186 (205)
Q Consensus       144 ~~~~---~~~-----~~~~~~~~~g~~~G~Gvey~~it~-----~~~~r~EY~y~d  186 (205)
                      +.+.   +..     ....+...+-..+|+-+++ .++.     .+.+++.|+|..
T Consensus       156 ~~~~~~e~~~~~~l~~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~  210 (285)
T 2qom_A          156 SGKQFAWKDQGMHLSMKDKDYNPLIGRTGVDVGK-SFSGKDWKVTARAGLGYQFDL  210 (285)
T ss_dssp             EEEEC--------CCCEEEEEEEEEEEEEEEEEE-EEECSSEEEEEEEEEEEEEEE
T ss_pred             ECCCCCCCCCCCCCEECCCCEEEEEEEEEEEEEE-EEECCCEEEEEEEEEEEEEEC
T ss_conf             6477323577433133046400688875435301-130688079999999999721


No 22 
>>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae} (A:)
Probab=96.02  E-value=0.045  Score=28.10  Aligned_cols=68  Identities=10%  Similarity=-0.063  Sum_probs=38.7

Q ss_pred             CCCEEEEEEEEEEECC-C--EEEEEEEEEEECCCCCC------CCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEE
Q ss_conf             7602689985464048-3--79984510132155566------6621223214899989754312767789885447
Q gi|254780598|r   74 HNAGGSIFAGYNVEDS-C--IMYGVEGDVRYTVPVLA------DNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPD  141 (205)
Q Consensus        74 ~~~~~G~~~GYn~q~~-~--~V~G~e~d~~~~~~~~~------~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a  141 (205)
                      +.....+.++|.+... .  ...++-..+.+...+..      ........+...+.+.+.|.+++++.+.+..-+.
T Consensus        90 ~~~~~~~~~~y~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y~l~~~~~l~~~~~y~  166 (216)
T 2k0l_A           90 KAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADSKGNYASTGVSRSEHDTGVSPVFAGGVEWAVTRDIATRLEYQWV  166 (216)
T ss_dssp             CCCEEEEEEEEEEESSSSEEEEEEEEEEEEECCCCCSCCCSSSCCCCCCEEEEEEEEEEEEEECSSSCEEEEEESSC
T ss_pred             EEEEEEEEEEEEEEEECCCEEEEEEEEEEEEECCEEECCCCCCCCCCCCCCCCCEECCEEEEEECCCEEEEEEEEEE
T ss_conf             88878899999986202411777744789860111201457632113456303135123799836997999999999


No 23 
>>1uyn_X NALP; autotransporter, translocator domain, membrane protein, outer membrane, beta-domain, beta-barrel; HET: CXE; 2.6A {Neisseria meningitidis} (X:)
Probab=96.00  E-value=0.063  Score=27.32  Aligned_cols=69  Identities=19%  Similarity=0.138  Sum_probs=34.0

Q ss_pred             EEEEEEEEEEEEEC--CCEE--EEEEEEEEEEEEEE---CCC---CCCCCCC--CEEEEEEEEEEEECCCCC--EEEEEE
Q ss_conf             14899989754312--7677--89885447764443---134---5556775--204799734661004886--799999
Q gi|254780598|r  116 IGGSLRIRGGYEVS--DSLL--LYATVGPDVAQKYE---TGK---AGEITPI--AIGGTAGVGVEVGGLSES--LVARLE  181 (205)
Q Consensus       116 ~~~~~~~r~Gy~~~--~~~l--~Y~~~G~a~~~~~~---~~~---~~~~~~~--~~g~~~G~Gvey~~it~~--~~~r~E  181 (205)
                      ....+..++||++.  +++.  ||+.+.+.+.+.+.   ++.   ......+  .....+|+-+++ .+..+  +.++++
T Consensus       153 ~~~~~~~~~gy~~~~~~~~~l~P~~~l~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~  231 (308)
T 1uyn_X          153 TLMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWSGNSLTEGTLVGLAGLKLSQ-PLSDKAVLFATAG  231 (308)
T ss_dssp             EEEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESCTTCCEECCEEEEEEEEEEEEEEEE-ECSSSEEEEEEEE
T ss_pred             EEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCEEEECCCEEEEECCCCCEEEEEEEEEEEEE-ECCCEEEEEEEEE
T ss_conf             179999999899982696599999875777862455075077416886256502666876899975-2155167989989


Q ss_pred             EEEE
Q ss_conf             9997
Q gi|254780598|r  182 YRAS  185 (205)
Q Consensus       182 Y~y~  185 (205)
                      |+|.
T Consensus       232 ~~~~  235 (308)
T 1uyn_X          232 VERD  235 (308)
T ss_dssp             EEEE
T ss_pred             EEEE
T ss_conf             9997


No 24 
>>2wjr_A Probable N-acetylneuraminic acid outer membrane channel protein NANC; cell membrane, ION transport, transmembrane, porin, transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A* (A:)
Probab=95.81  E-value=0.077  Score=26.87  Aligned_cols=53  Identities=15%  Similarity=0.195  Sum_probs=36.3

Q ss_pred             CCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC-CC----CCEEEEEEEEEEC
Q ss_conf             556775204799734661004886799999999750565-56----6226999998539
Q gi|254780598|r  152 GEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV-EG----FYNTISLGVGMKF  205 (205)
Q Consensus       152 ~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~-~~----~~~~~~~G~~ykF  205 (205)
                      ...+.....|..-+=+.| .+.++|.--+|+...+-... +.    ....+||||.|-|
T Consensus       157 ~~~~~k~~~~e~n~~~~Y-k~~~~w~PYvE~g~v~~~~~~~~~~~~~q~r~RvGv~Y~F  214 (214)
T 2wjr_A          157 RYANHKKWATENAFVLQY-HMTPDITPYIEYDYLDRQGVYNGRDNLSENSYRIGVSFKL  214 (214)
T ss_dssp             CCTTSSSEEEEEEEEEEE-CSSSSEEEEEEEEECCSCEEETTEEEECCEEEEEEEEECC
T ss_pred             EEECCCCCEEEEEEEEEE-EECCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             641887741689999999-8589732369999841552017764542426999989759


No 25 
>>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell outer membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa} (X:322-632)
Probab=95.81  E-value=0.078  Score=26.86  Aligned_cols=30  Identities=13%  Similarity=0.037  Sum_probs=17.7

Q ss_pred             CCCEEEEEEEEEEECC-CEEEEEEEEEEECC
Q ss_conf             7602689985464048-37998451013215
Q gi|254780598|r   74 HNAGGSIFAGYNVEDS-CIMYGVEGDVRYTV  103 (205)
Q Consensus        74 ~~~~~G~~~GYn~q~~-~~V~G~e~d~~~~~  103 (205)
                      +....++.+|++.+.. ++.+|+-..+...+
T Consensus        59 ~~~~~g~~~G~d~~~~~~~~~G~~~~~~~~~   89 (311)
T 3kvn_X           59 DGNGYNLTLGGSYRIDEAWRAGVAAGFYRQK   89 (311)
T ss_dssp             EEEEEEEEEEEEEECSSSEEEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEEEEECCCEEEEEEEEEEEEE
T ss_conf             5315359999887877987999999974001


No 26 
>>2o4v_A Porin P; outer membrane, phosphate, transport, channel, membrane protein; HET: C8E; 1.94A {Pseudomonas aeruginosa PAO1} (A:)
Probab=95.44  E-value=0.11  Score=26.10  Aligned_cols=49  Identities=20%  Similarity=0.222  Sum_probs=39.5

Q ss_pred             CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC-----CCCCEEEEEEEEEEC
Q ss_conf             75204799734661004886799999999750565-----566226999998539
Q gi|254780598|r  156 PIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV-----EGFYNTISLGVGMKF  205 (205)
Q Consensus       156 ~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~-----~~~~~~~~~G~~ykF  205 (205)
                      ....+..+-+|+.| .+++|+.+++||.|.+..+.     +-+.|.+++.+.|+|
T Consensus       358 ~~~~~~~~~~g~~~-~~~~n~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~F  411 (411)
T 2o4v_A          358 GDAKGKTHTLGVNW-YANEAVKVSANYVKAKTDKISNANGDDSGDGLVMRLQYVF  411 (411)
T ss_dssp             SCEEEEEEEEEEEE-ECSSSEEEEEEEEEEEEESBCCTTCCCEEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             77606999999999-9808999999999986665666778886558999988889


No 27 
>>2wjr_A Probable N-acetylneuraminic acid outer membrane channel protein NANC; cell membrane, ION transport, transmembrane, porin, transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A* (A:)
Probab=95.33  E-value=0.12  Score=25.92  Aligned_cols=98  Identities=4%  Similarity=-0.152  Sum_probs=53.1

Q ss_pred             EEEEEEEEEECC-CEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCC
Q ss_conf             689985464048-3799845101321555666621223214899989754312767789885447764443134555677
Q gi|254780598|r   78 GSIFAGYNVEDS-CIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITP  156 (205)
Q Consensus        78 ~G~~~GYn~q~~-~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~  156 (205)
                      -.+.+.|.|++. ++.+-.-..+......          ....-..|++|.|.+.+.+-++--+-+.+...... ..+.+
T Consensus        54 ~E~~~~y~~kl~d~~~l~PG~~~~~~~~~----------~~ykPylk~~Y~f~~~~~~~~RYRy~~~~~~~~~~-~~~~~  122 (214)
T 2wjr_A           54 VQVEVNYAIKLDDQWTVRPGMLTHFSSNG----------TRYGPYVKLSWDATKDLNFGIRYRYDWKAYRQQDL-SGDMS  122 (214)
T ss_dssp             EEEEEEECEESSSSEEEEEEEEEEEETTE----------EEEEEEEEEEEEEETTEEEEEEEEEEEESSCEECT-TSCEE
T ss_pred             EEEEEEEEEECCCCEEEECCEEEEECCCC----------CEEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCC-CCCCC
T ss_conf             69999999863888699345399966998----------57802799969976985799883132013655567-78766


Q ss_pred             CCEEEEEEEEEEEECCCCCEEEEEEEEEEEC
Q ss_conf             5204799734661004886799999999750
Q gi|254780598|r  157 IAIGGTAGVGVEVGGLSESLVARLEYRASKY  187 (205)
Q Consensus       157 ~~~g~~~G~Gvey~~it~~~~~r~EY~y~df  187 (205)
                      ......+-+.+-| .++++|.+..|+.|..-
T Consensus       123 ~~~~~r~d~~~~Y-~~~~~~~~~y~~~y~~~  152 (214)
T 2wjr_A          123 RDNVHRWDGYVTY-HINSDFTFAWQTTLYSK  152 (214)
T ss_dssp             CCCEEEEEEEEEE-ECSSSEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEE-EECCCEEEEEEEEEEEC
T ss_conf             6751789789988-85456079987788852


No 28 
>>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein; HET: BOG; 1.45A {Delftia acidovorans} (X:)
Probab=94.87  E-value=0.16  Score=25.19  Aligned_cols=48  Identities=13%  Similarity=0.041  Sum_probs=36.4

Q ss_pred             CCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC-----------------CCCCEEEEEEEEEEC
Q ss_conf             5204799734661004886799999999750565-----------------566226999998539
Q gi|254780598|r  157 IAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV-----------------EGFYNTISLGVGMKF  205 (205)
Q Consensus       157 ~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~-----------------~~~~~~~~~G~~ykF  205 (205)
                      ......+-+|++| .++++..+.+||.|.+-.+.                 ..+.+.+.+||-|+|
T Consensus       268 ~~~~~~~~~g~~y-~l~k~~~~ya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Glr~~F  332 (332)
T 2fgq_X          268 DSKAHQITLGYVH-NLSKRTALYGNLAFLKNKDASTLGLQAKGVYAGGVQAGESQTGVQVGIRHAF  332 (332)
T ss_dssp             TEEEEEEEEEEEE-ESSSSEEEEEEEEEEEECTTCCCCCCBTTTBCSCCCTTCEEEEEEEEEEEEC
T ss_pred             CCCCEEEEEEEEE-ECCCCCHHHHEEHHEECCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEEC
T ss_conf             8972599999999-6466718733024121258774210111002478789987699999999989


No 29 
>>2f1v_A Outer membrane protein W; outer membrane protein beta barrel; 2.70A {Escherichia coli K12} PDB: 2f1t_A (A:)
Probab=94.76  E-value=0.15  Score=25.46  Aligned_cols=32  Identities=13%  Similarity=0.026  Sum_probs=19.8

Q ss_pred             CCCCEEEEEEEEEEEEECCCEEEEEEEEEEEE
Q ss_conf             22321489998975431276778988544776
Q gi|254780598|r  112 SLHGIGGSLRIRGGYEVSDSLLLYATVGPDVA  143 (205)
Q Consensus       112 ~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~  143 (205)
                      .+..+...+.+-+.|.+++++.+.+..-+...
T Consensus       128 ~~~~~~~~~g~G~~y~l~~~~~l~~eyry~~~  159 (197)
T 2f1v_A          128 LKDSWGAAGQVGVDYLINRDWLVNMSVWYMDI  159 (197)
T ss_dssp             ECCEEEEEEEEEEEEECSSSEEEEEEEEEECC
T ss_pred             CCCCEEEEEECCEEEECCCCEEEEEEEEEEEC
T ss_conf             56638389973489990798399999999974


No 30 
>>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii} (A:)
Probab=94.30  E-value=0.23  Score=24.45  Aligned_cols=22  Identities=18%  Similarity=0.327  Sum_probs=10.1

Q ss_pred             EEEEEEECCCCCEEEEEEEEEEE
Q ss_conf             73466100488679999999975
Q gi|254780598|r  164 GVGVEVGGLSESLVARLEYRASK  186 (205)
Q Consensus       164 G~Gvey~~it~~~~~r~EY~y~d  186 (205)
                      -+++++ .++++|.+++.|.|.+
T Consensus       339 El~~~~-~~~~~l~l~~~y~y~~  360 (441)
T 3bry_A          339 GIGAEY-RYNAKWTFRGGFHYAQ  360 (441)
T ss_dssp             EEEEEE-EEETTEEEEEEEEEEE
T ss_pred             EEEEEE-EECCCEEEEEEEEECC
T ss_conf             986799-9779889999899846


No 31 
>>2vdf_A OPCA, outer membrane protein; invasin, adhesin, beta barrel; 1.95A {Neisseria meningitidis} (A:)
Probab=92.95  E-value=0.41  Score=23.16  Aligned_cols=50  Identities=30%  Similarity=0.416  Sum_probs=25.0

Q ss_pred             CCCEEEEEEEEEEEE-CCCCC--EEEEEEEEEEECCCC---------------C--CCCEEEEEEEEEEC
Q ss_conf             752047997346610-04886--799999999750565---------------5--66226999998539
Q gi|254780598|r  156 PIAIGGTAGVGVEVG-GLSES--LVARLEYRASKYSKV---------------E--GFYNTISLGVGMKF  205 (205)
Q Consensus       156 ~~~~g~~~G~Gvey~-~it~~--~~~r~EY~y~df~~~---------------~--~~~~~~~~G~~ykF  205 (205)
                      .+..++.+++|++.. .++++  ++++.=|||-...+-               +  ...++.-+.++|||
T Consensus       184 ~~q~g~g~~~ga~i~k~l~~~~~l~~~P~yr~w~I~~S~~~~~~~~~~~~~~~ep~n~~~~yGv~~~~~F  253 (253)
T 2vdf_A          184 QKTNGWGFGLGANIGKKLGESASIEAGPFYKQRTYKESGEFSVTTKSGDVSLTIPKTSIREYGLRVGIKF  253 (253)
T ss_dssp             EECCEEEEEEEEEEEEECC--CEEEEEEEEEEEEECCCCCBCC-------CBCCCCEEEEEEEEEEEEEC
T ss_pred             HHCCCCCEEEEEEEHHCCCCCCCEEEECEEEEEEECCCCCEEEEECCCCEEEECCCCCCEEEEEEEEEEC
T ss_conf             0016833799788022036645366402045445404765378605884357658875225327888759


No 32 
>>2qtk_A Probable porin; outer membrane protein, beta barrel, vanillate transport; HET: C8E; 2.80A {Pseudomonas aeruginosa} (A:)
Probab=92.43  E-value=0.48  Score=22.78  Aligned_cols=44  Identities=14%  Similarity=0.155  Sum_probs=26.6

Q ss_pred             EEEEEEEEEEECCC----CCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             47997346610048----86799999999750565566226999998539
Q gi|254780598|r  160 GGTAGVGVEVGGLS----ESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       160 g~~~G~Gvey~~it----~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      +.-+.+.+.| .++    +++++++-|.+.+ .+.+.+.+.+|+-+.|+|
T Consensus       341 ~~E~~~~~~Y-~~~~g~~k~l~~~~~y~~~~-~~~~~d~~~~r~~~~Y~f  388 (390)
T 2qtk_A          341 EWERDVELGY-TVQSGPLARLNVRLNHASNR-RSFNSDFDQTRLVVSYPL  388 (390)
T ss_dssp             EEEEEEEEEE-ECCSSTTTTCEEEEEEEEEE-ETTSCCEEEEEEEEEEEE
T ss_pred             CEEEEEEEEE-EECCCCCCCCEEEEEEEEEE-CCCCCCCEEEEEEEEEEE
T ss_conf             1699899999-98776658858999987850-678898536999999771


No 33 
>>3jty_A BENF-like porin; PFL_1329, benzoate transporter, efflux pump, structural genomics, PSI-2, protein structure initiative; HET: LDA; 2.58A {Pseudomonas fluorescens pf-5} (A:)
Probab=92.32  E-value=0.5  Score=22.71  Aligned_cols=45  Identities=7%  Similarity=0.000  Sum_probs=32.4

Q ss_pred             EEEEEEEEEEECCC----CCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             47997346610048----86799999999750565566226999998539
Q gi|254780598|r  160 GGTAGVGVEVGGLS----ESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       160 g~~~G~Gvey~~it----~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      ++-+-+-+.| .+.    +++++++.|-+.+-..-+.+.+.+|+-+.|+|
T Consensus       343 ~~E~~~~~~Y-~~~~g~lK~l~~~~~y~~~~~~~~~~d~~~~r~~~~Y~F  391 (402)
T 3jty_A          343 EWGRESEVAY-TVQSGTLKNLNLKWRNSTMRRDFSNNEFDENRLIISYPL  391 (402)
T ss_dssp             EEEEEEEEEE-ECCSSSSCSCEEEEEEEEEEESSCSCCEEEEEEEEEEEE
T ss_pred             EEEEEEEEEE-EECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEEEE
T ss_conf             2799999999-867876588489999999836778898558999999294


No 34 
>>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A* (A:)
Probab=89.16  E-value=1  Score=21.10  Aligned_cols=84  Identities=15%  Similarity=0.112  Sum_probs=49.5

Q ss_pred             EEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCC-CCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC--------
Q ss_conf             9998975431276778988544776444313455-5677520479973466100488679999999975056--------
Q gi|254780598|r  119 SLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAG-EITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK--------  189 (205)
Q Consensus       119 ~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~-~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~--------  189 (205)
                      .+.+-+.+.+.+.+.+.+  ++++.+.+.+.... ..-....-+++.+++.| .+.++|.+.+.++|..-..        
T Consensus       335 G~E~~~~~~~~~~~~~~~--~~ty~~~~~~~~~~g~~l~~~p~~~~~~~~~y-~~~~~~~~~~~~~y~~~~~~~~~~~~~  411 (439)
T 3bs0_A          335 VASIGTAYKYNNDLTLRA--GYSYAQQALDSELILPVIPAYLKRHVTFGGEY-DFDKDSRINLAISFGLRERVQTPSYLA  411 (439)
T ss_dssp             EEEEEEEEECSSSEEEEE--EEEECC------CCCTTSCCCCSEEEEEEEEE-ESSSSEEEEEEEEEEEEEEEEC-----
T ss_pred             EEEEEEEEEECCCEEEEE--EEEECCCCCCCCCCCCCCCCCCCEEEEEEEEE-EECCCEEEEEEEEEECCCCCCCCCCCC
T ss_conf             999612699689789999--79974678784310433457688899987999-808985999999997043101367777


Q ss_pred             ------CCCCCEEEEEEEEEEC
Q ss_conf             ------5566226999998539
Q gi|254780598|r  190 ------VEGFYNTISLGVGMKF  205 (205)
Q Consensus       190 ------~~~~~~~~~~G~~ykF  205 (205)
                            .+.....+.+.++|+|
T Consensus       412 ~~~~~~~~~~~~~~~l~~~~~~  433 (439)
T 3bs0_A          412 GTEMLRQSHSQINAVVSYSKNF  433 (439)
T ss_dssp             -CCCCEEEEEEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEEEEEEEE
T ss_conf             7553145667899999999896


No 35 
>>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa} (X:)
Probab=88.24  E-value=1.2  Score=20.76  Aligned_cols=45  Identities=22%  Similarity=0.272  Sum_probs=26.6

Q ss_pred             EEEEEEEEEEECCCCCEEEEEEEEEEECC--CC-------CCCCEEEEEEEEEEC
Q ss_conf             47997346610048867999999997505--65-------566226999998539
Q gi|254780598|r  160 GGTAGVGVEVGGLSESLVARLEYRASKYS--KV-------EGFYNTISLGVGMKF  205 (205)
Q Consensus       160 g~~~G~Gvey~~it~~~~~r~EY~y~df~--~~-------~~~~~~~~~G~~ykF  205 (205)
                      -+.+-++++| .++++|.+++.|.|.+-.  +.       ....+++.+++.|+|
T Consensus       336 ~~g~el~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~  389 (451)
T 3dwo_X          336 TWTLAVGGDY-KVTDQWTMRAGVAYDQTPTHNATRDPRIPDGDRYFASLGAGYRF  389 (451)
T ss_dssp             EEEEEEEEEE-ESSSSEEEEEEEEEECCSCCTTTCCSSSCCCCEEEEEEEEEEEC
T ss_pred             CEEEEEEEEE-EECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEE
T ss_conf             1258888999-94897899999996667878543153100578779998899997


No 36 
>>3dwn_A Long-chain fatty acid transport protein; beta barrel, outer membrane protein, lipid transport, membrane, outer membrane, phage recognition; HET: LDA; 2.50A {Escherichia coli} PDB: 1t16_A* 1t1l_A* 2r4p_A* 2r4n_A* 2r4l_A* 2r4o_A* 2r89_A 2r8a_A* 2r88_A (A:)
Probab=85.34  E-value=1.8  Score=19.89  Aligned_cols=21  Identities=5%  Similarity=0.060  Sum_probs=10.6

Q ss_pred             EEEEEEEEECCCCCEEEEEEEE
Q ss_conf             9973466100488679999999
Q gi|254780598|r  162 TAGVGVEVGGLSESLVARLEYR  183 (205)
Q Consensus       162 ~~G~Gvey~~it~~~~~r~EY~  183 (205)
                      ++.+++.| .++++|.+.+.-+
T Consensus       368 ~~dl~~~y-~~~~~~~l~~~v~  388 (427)
T 3dwn_A          368 WLSAGTTY-AFNKDASVDVGVS  388 (427)
T ss_dssp             EEEEEEEE-ESSSSEEEEEEEE
T ss_pred             EEEEEEEE-ECCCCEEEEEEEE
T ss_conf             99987979-8389869999999


No 37 
>>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A* (A:1-83)
Probab=83.88  E-value=0.34  Score=23.55  Aligned_cols=26  Identities=35%  Similarity=0.267  Sum_probs=17.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             94437899999999984100002466
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADP   26 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~   26 (205)
                      |||+++.+.+.+++++...++.++..
T Consensus         1 Mkk~li~~~~~~l~~~~~~~~~~~~~   26 (83)
T 2a3m_A            1 MRKSLFAVMVLALVAAFALPVIAAEA   26 (83)
T ss_dssp             -----------------------CCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             90689999999999999856643028


No 38 
>>1af6_A Maltoporin, LAMB; membrane protein, specific porin, beta barrel, sugar transport, sucrose; HET: GLC FRU; 2.40A {Escherichia coli} (A:)
Probab=79.45  E-value=3.1  Score=18.66  Aligned_cols=65  Identities=15%  Similarity=0.128  Sum_probs=43.7

Q ss_pred             EEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEE
Q ss_conf             489998975431276778988544776444313455567752047997346610048867999999
Q gi|254780598|r  117 GGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEY  182 (205)
Q Consensus       117 ~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY  182 (205)
                      ..++.+|+-|.+++.+-+-..+||...+.+......+-.+.-..+++-+|..+ .--|.+-+-+-|
T Consensus       305 ~~s~~vRP~y~~~~~~~~~~E~gy~~~~~~~~g~~~~~~K~TiApt~~~g~~~-~sRPeiR~faTY  369 (421)
T 1af6_A          305 WWTVGIRPMYKWTPIMSTVMEIGYDNVESQRTGDKNNQYKITLAQQWQAGDSI-WSRPAIRVFATY  369 (421)
T ss_dssp             EEEEEEEEEEESSSSEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEESSSST-TCSCEEEEEEEE
T ss_pred             EEEEEEEEEEEECCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCC-CCCCEEEEEEEE
T ss_conf             99999788789768426999988988742788876644799998615307887-779579999999


No 39 
>>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} (A:1-45,A:210-554)
Probab=77.96  E-value=3.4  Score=18.42  Aligned_cols=46  Identities=11%  Similarity=0.017  Sum_probs=30.4

Q ss_pred             CEEEEEEEEEEEECCCCCEEEEEEEEEEECC---CCCCCCEEEEEEEEEEC
Q ss_conf             2047997346610048867999999997505---65566226999998539
Q gi|254780598|r  158 AIGGTAGVGVEVGGLSESLVARLEYRASKYS---KVEGFYNTISLGVGMKF  205 (205)
Q Consensus       158 ~~g~~~G~Gvey~~it~~~~~r~EY~y~df~---~~~~~~~~~~~G~~ykF  205 (205)
                      ..-..+|+|+.+  .++...+|++|-+---.   +...+...+.+.+++.|
T Consensus       342 ~~~~s~G~Glr~--~~~~~~l~l~~a~~l~~~~~~~~~~~~~~~f~ig~~F  390 (390)
T 2qdz_A          342 IRMAGLAAGVRF--DLPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGLSF  390 (390)
T ss_dssp             EEEEEEEEEEEE--CCSSEEEEEEEEEECSCSCSSSCCCCSEEEEEEEEEC
T ss_pred             CEEEEEEEEEEE--EECCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEC
T ss_conf             769999999999--9388789999998767898887688659999998289


No 40 
>>2odj_A Porin D; outer membrane protein, beta-barrel, amino acid transport; HET: C8E; 2.90A {Pseudomonas aeruginosa PAO1} (A:)
Probab=66.44  E-value=6.6  Score=16.94  Aligned_cols=48  Identities=15%  Similarity=0.063  Sum_probs=34.3

Q ss_pred             CCEEEEEEEEEEEECCC----CCEEEEEEEEEEE--CCCCCCCCEEEEEEEEEEC
Q ss_conf             52047997346610048----8679999999975--0565566226999998539
Q gi|254780598|r  157 IAIGGTAGVGVEVGGLS----ESLVARLEYRASK--YSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       157 ~~~g~~~G~Gvey~~it----~~~~~r~EY~y~d--f~~~~~~~~~~~~G~~ykF  205 (205)
                      ...+.-+.+-+.| .++    +++++++.|-+.+  ....+.+.+.+|+-+.|+|
T Consensus       364 ~~~~~E~~~~~~Y-~~~~g~~K~L~~~~~~~~~~~d~~~~~~d~~~~rl~~~Y~F  417 (428)
T 2odj_A          364 DGKHHETNLEAKY-VVQSGPAKDLSFRIRQAWHRANADQGEGDQNEFRLIVDYPL  417 (428)
T ss_dssp             SEEEEEEEEEEEE-ECCSSTTTTCEEEEEEEEEEECTTTSSCSBEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE-EECCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEEEEE
T ss_conf             7741589789999-97888757838999999995467657898648999999390


No 41 
>>1jb0_F Photosystem 1 reaction centre subunit III; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} (F:1-79)
Probab=53.46  E-value=3.3  Score=18.48  Aligned_cols=27  Identities=30%  Similarity=0.170  Sum_probs=20.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCC--CCCC
Q ss_conf             94437899999999984100002--4665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQA--ADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~A--ad~~   27 (205)
                      |||++..+.+..+.++.+.+|.|  +.++
T Consensus         1 Mrrl~aliL~~~l~~~~~p~A~Ad~agLt   29 (79)
T 1jb0_F            1 MRRFLALLLVLTLWLGFTPLASADVAGLV   29 (79)
T ss_dssp             -----------------------CGGGCE
T ss_pred             CHHHHHHHHHHHHHHCCCCCCHHHHCCCC
T ss_conf             92799999999999838963012440785


No 42 
>>1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} (A:1-134,A:224-292)
Probab=43.49  E-value=6.1  Score=17.10  Aligned_cols=17  Identities=29%  Similarity=0.341  Sum_probs=10.6

Q ss_pred             CHHHHHHHHHHHHHHHH
Q ss_conf             94437899999999984
Q gi|254780598|r    1 MQKLFLAVGVSSLALAS   17 (205)
Q Consensus         1 Mkk~~la~av~~lal~~   17 (205)
                      |||++..++++++++++
T Consensus         1 MKk~l~~~~~~l~ll~~   17 (203)
T 1xt8_A            1 MKYLLPTAAAGLLLLAA   17 (203)
T ss_dssp             -----------------
T ss_pred             CCHHHHHHHHHHHHHHH
T ss_conf             93189999999999999


No 43 
>>2qn4_A RASI, alpha-amylase/subtilisin inhibitor; amylase inhibitor, alpha- amylase inhibitor, protease inhibitor, serine protease inhibitor; 1.80A {Oryza sativa subsp} (A:)
Probab=41.24  E-value=8.8  Score=16.31  Aligned_cols=31  Identities=32%  Similarity=0.326  Sum_probs=21.3

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             9443789999999998410000246654356
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAH   31 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~   31 (205)
                      ||.+.+...+.++++.+..++.+++++....
T Consensus         1 MKs~~l~~l~l~~~~ts~~~~~~~~~VlD~~   31 (200)
T 2qn4_A            1 MVSLRLPLILLSLLAISFSCSAAPPPVYDTE   31 (200)
T ss_dssp             ----------------------CCCBCBCTT
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCCEECCC
T ss_conf             9106899999999998653325898539399


No 44 
>>2vx5_A Cellvibrio japonicus mannanase cjman26C; hydrolase; HET: BMA; 1.47A {Cellvibrio japonicus} PDB: 2vx4_A* 2vx6_A* 2vx7_A* (A:)
Probab=38.60  E-value=11  Score=15.81  Aligned_cols=18  Identities=17%  Similarity=-0.025  Sum_probs=7.3

Q ss_pred             CHHHHHHHHHHHHHHHHC
Q ss_conf             944378999999999841
Q gi|254780598|r    1 MQKLFLAVGVSSLALASF   18 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~   18 (205)
                      |||.++.+.++++++..+
T Consensus         3 ~~k~~~~~~~~~~~~~~~   20 (396)
T 2vx5_A            3 EKPAESAAAVADSATTTA   20 (396)
T ss_dssp             ------------------
T ss_pred             CCHHHHHHHHHHCCCCCC
T ss_conf             662566777760344346


No 45 
>>2dck_A Xylanase J; family 11, xylan binding domain (XBM), beta-jelly roll, alkaliphilic xylanase, hydrolase; 2.10A {Bacillus SP} PDB: 2dcj_A (A:1-232)
Probab=37.25  E-value=19  Score=14.56  Aligned_cols=14  Identities=7%  Similarity=0.147  Sum_probs=8.3

Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             94437899999999
Q gi|254780598|r    1 MQKLFLAVGVSSLA   14 (205)
Q Consensus         1 Mkk~~la~av~~la   14 (205)
                      ||++.+.+++++++
T Consensus         1 m~~~~~~~~~a~~~   14 (232)
T 2dck_A            1 MKQVKIMFLMTMFL   14 (232)
T ss_dssp             --------------
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             95021369899999


No 46 
>>1a0s_P Sucrose-specific porin; outer membrane protein; 2.40A {Salmonella typhimurium} (P:)
Probab=35.86  E-value=23  Score=14.18  Aligned_cols=127  Identities=13%  Similarity=-0.067  Sum_probs=68.8

Q ss_pred             CCCCEEEEEEEEEEECC-CEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCC
Q ss_conf             77602689985464048-37998451013215556666212232148999897543127677898854477644431345
Q gi|254780598|r   73 HHNAGGSIFAGYNVEDS-CIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKA  151 (205)
Q Consensus        73 ~~~~~~G~~~GYn~q~~-~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~  151 (205)
                      +++.+.-+.-=-.+++. +|-+...+-+...+.....  ..+.. ..++.+|+-|.+++.+-+-..+||...+.+.....
T Consensus       262 ~d~~s~Ri~~~g~~~~~~~~~~~~~~~y~~~~d~~~~--~~~~~-~~s~~vRP~y~~~~~~~~~~E~gy~~~~~~~~~~~  338 (413)
T 1a0s_P          262 PGADTWRIASYGTTPLSENWSVAPAMLAQRSKDRYAD--GDSYQ-WATFNLRLIQAINQNFALAYEGSYQYMDLKPEGYN  338 (413)
T ss_dssp             TTCEEEEEEEEEEEESSSSEEEEEEEEEEEEESSSST--TCEEE-EEEEEEEEEEECSSSEEEEEEEEEEEEEEECTTGG
T ss_pred             CCCEEEEEEEECCEECCCCEEEEEEEEEEEECCCCCC--CCCEE-EEEEEEEEEEEECCCEEEEEEEEEEEECCCCCCCC
T ss_conf             9851899998732752487677677899984166678--99638-99999898689768678999999876303446753


Q ss_pred             CCCC------CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC--------------CCCCEEEEEEEEE
Q ss_conf             5567------75204799734661004886799999999750565--------------5662269999985
Q gi|254780598|r  152 GEIT------PIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV--------------EGFYNTISLGVGM  203 (205)
Q Consensus       152 ~~~~------~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~--------------~~~~~~~~~G~~y  203 (205)
                      ....      +.-..+++-+|.+- -+-.+=.+|+=+.|.+..+.              ..+.+++.+|+-.
T Consensus       339 ~~~~~~~~~~K~TlApt~~~~~~~-~fwsRPelR~faTY~~w~~~~~~~~~~~~~~~~~~~~~~~~~fGvQ~  409 (413)
T 1a0s_P          339 DRQAVNGSFYKLTFAPTFKVGSIG-DFFSRPEIRFYTSWMDWSKKLNNYASDDALGSDGFNSGGEWSFGVQM  409 (413)
T ss_dssp             GCCCEEEEEEEEEEEEEEESSCTT-CTTCCCEEEEEEEEEEECGGGGGSCSSSSTTSTTCCSSCEEEEEEEE
T ss_pred             CCCCCCCCEEEEEEEEEECCCCCC-CCCCCCEEEEEEEEEECCHHHCCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf             676667846899998641328978-77779789999999804402111223565454566888878999999


No 47 
>>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protein secretion, microbial pathogenesi; HET: C8E; 2.30A {Haemophilus influenzae} (A:)
Probab=34.45  E-value=24  Score=14.06  Aligned_cols=39  Identities=18%  Similarity=0.238  Sum_probs=24.6

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             99734661004886799999999750565566226999998539
Q gi|254780598|r  162 TAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      .+.+|+-+...+++|.+++---...     .....+.+|++|+|
T Consensus        91 AvAiG~~~~~~~~~~~~~~~~s~~s-----~~~~~~gaGv~~~f  129 (129)
T 2gr7_A           91 GLAIGVSRISDNGKVIIRLSGTTNS-----QGKTGVAAGVGYQW  129 (129)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEET-----TCCCEEEEEEEEEC
T ss_pred             EEEEEEEEECCCCCEEEEEEEEECC-----CCCEEEEEEEEEEC
T ss_conf             4998889970478799999898648-----99779997777689


No 48 
>>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Flavobacterium heparinium} (A:1-474)
Probab=34.17  E-value=10  Score=15.93  Aligned_cols=29  Identities=17%  Similarity=0.031  Sum_probs=21.0

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             94437899999999984100002466543
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRR   29 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~   29 (205)
                      |||+++.++...+.++..+.+.+++....
T Consensus         1 Mk~~~~~~~~~~~~v~~~~~~~~~~~~~~   29 (474)
T 1dbg_A            1 MKMLNKLAGYLLPIMVLLNVAPCLGQVVA   29 (474)
T ss_dssp             -------------------------CEEC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCEEECC
T ss_conf             90699999999999998601201005508


No 49 
>>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase/receptor, PCSK9, proprotein convertase, EGF, cardiovascular disease; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P (P:)
Probab=33.63  E-value=10  Score=16.02  Aligned_cols=27  Identities=11%  Similarity=-0.060  Sum_probs=17.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             944378999999999841000024665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~   27 (205)
                      ||++.+++..+.+.+.....+.++++.
T Consensus         1 M~~~~~~~~~~~~~~~~~~~~~~a~~~   27 (114)
T 2w2n_P            1 MKGSKGSKGSKPMSAEAPEHGTTATFH   27 (114)
T ss_dssp             ---------------------CCCEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             998888999987765687667514566


No 50 
>>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, structural genomics; 2.00A {Homo sapiens} (A:)
Probab=33.12  E-value=16  Score=14.92  Aligned_cols=18  Identities=11%  Similarity=0.060  Sum_probs=10.4

Q ss_pred             CHHHHHHHHHHHHHHHHC
Q ss_conf             944378999999999841
Q gi|254780598|r    1 MQKLFLAVGVSSLALASF   18 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~   18 (205)
                      |||+++.+.+.++++++.
T Consensus         1 Mk~~~~~~~~~~~~~~~~   18 (215)
T 2i3y_A            1 MHHHHHHSSGVDLGTENL   18 (215)
T ss_dssp             ------------------
T ss_pred             CCCCCCCCCCCCHHHHHH
T ss_conf             975434455510123677


No 51 
>>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} (A:)
Probab=31.55  E-value=12  Score=15.70  Aligned_cols=23  Identities=43%  Similarity=0.353  Sum_probs=12.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             944378999999999841000024
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAA   24 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aa   24 (205)
                      |||+++.+++.++. .+++++.|+
T Consensus         1 Mk~~~~~l~~~~~~-~~~~~~~a~   23 (191)
T 1y0g_A            1 MKKSLLGLTFASLM-FSAGSAVAA   23 (191)
T ss_dssp             -----------------------C
T ss_pred             CCHHHHHHHHHHHH-HHHHHCCCC
T ss_conf             92469999999999-763240366


No 52 
>>3dzm_A TTOA, hypothetical conserved protein; OMP, beta-barrel, unknown function; HET: C8E; 2.80A {Thermus thermophilus HB27} (A:)
Probab=29.96  E-value=29  Score=13.65  Aligned_cols=51  Identities=20%  Similarity=0.075  Sum_probs=23.6

Q ss_pred             CEEEEEEEEEEEEEEEEC--CC-----CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEE
Q ss_conf             677898854477644431--34-----55567752047997346610048867999999
Q gi|254780598|r  131 SLLLYATVGPDVAQKYET--GK-----AGEITPIAIGGTAGVGVEVGGLSESLVARLEY  182 (205)
Q Consensus       131 ~~l~Y~~~G~a~~~~~~~--~~-----~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY  182 (205)
                      .+.+|.-+=|..-+....  .+     ....+.+..|.-.|+=..| +|++|+++-.+-
T Consensus       100 ~~~~Y~GgRYgmF~a~~t~~ed~~~~~s~t~sSnafG~G~G~ma~Y-al~~nlSLVgDL  157 (214)
T 3dzm_A          100 EVAPYFGVRYNFFSGGYTDPEDNLTIKAQTISSNQLGLGLGVRAAY-PLMPNLSLVGDL  157 (214)
T ss_dssp             EEEEEEEEEEEEEEEEEECCSSSSSSCEEEEEEEEEEEEEEEEEEE-EEETTEEEEEEE
T ss_pred             EEEEECCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCEEEEC-CCCCCCCEEEEC
T ss_conf             2357605102455120103677741012046503335350115520-026873024304


No 53 
>>2f2f_C CDT C, cytolethal distending toxin C; actinobacillus actinomycetemcomitans, oligomerization, stability and toxic activity; 2.40A {Aggregatibacter actinomycetemcomitans} (C:)
Probab=28.93  E-value=21  Score=14.40  Aligned_cols=14  Identities=29%  Similarity=0.382  Sum_probs=9.9

Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             94437899999999
Q gi|254780598|r    1 MQKLFLAVGVSSLA   14 (205)
Q Consensus         1 Mkk~~la~av~~la   14 (205)
                      |||++++..+..+.
T Consensus         1 MkK~~i~f~~~~i~   14 (186)
T 2f2f_C            1 MKKYLLSFLLSMIL   14 (186)
T ss_dssp             --------------
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             93116999999998


No 54 
>>3e4r_A Nitrate transport protein; ALFA-beta protein, substrate-binding protein domain, alkanesulfonate-binding protein; HET: EPE; 2.01A {Xanthomonas axonopodis PV} (A:1-109,A:208-279)
Probab=28.55  E-value=15  Score=15.18  Aligned_cols=15  Identities=20%  Similarity=-0.137  Sum_probs=7.0

Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             944378999999999
Q gi|254780598|r    1 MQKLFLAVGVSSLAL   15 (205)
Q Consensus         1 Mkk~~la~av~~lal   15 (205)
                      |||+...+..+++++
T Consensus         1 Mk~~~~~~~~~~~~~   15 (181)
T 3e4r_A            1 MGSSHHHHHHSSGLV   15 (181)
T ss_dssp             ---------------
T ss_pred             CCCCCCCCCCHHCCC
T ss_conf             986544443100034


No 55 
>>3cbc_A Neutrophil gelatinase-associated lipocalin; siderocalin, NGAL, enterobactin, glycoprotein, pyrrolidone carboxylic acid, secreted; HET: DBS; 2.17A {Homo sapiens} PDB: 3cmp_A* 3by0_A* (A:)
Probab=27.99  E-value=27  Score=13.78  Aligned_cols=18  Identities=22%  Similarity=0.165  Sum_probs=12.7

Q ss_pred             CHHHHHHHHHHHHHHHHC
Q ss_conf             944378999999999841
Q gi|254780598|r    1 MQKLFLAVGVSSLALASF   18 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~   18 (205)
                      ||++++.+.+.++.++.+
T Consensus         1 Mk~~~~~~~l~l~~~l~a   18 (198)
T 3cbc_A            1 MPLGLLWLGLALLGALHA   18 (198)
T ss_dssp             ------------------
T ss_pred             CCHHHHHHHHHHHHHHHH
T ss_conf             936899999999999971


No 56 
>>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} (A:)
Probab=26.85  E-value=21  Score=14.31  Aligned_cols=25  Identities=12%  Similarity=-0.194  Sum_probs=16.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9443789999999998410000246
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad   25 (205)
                      ||++++++.++++.+++...+.+..
T Consensus         1 Mr~~~~~~~~~~~~~~~~~~~~~~~   25 (220)
T 1zye_A            1 MGSSHHHHHHSSGLVPRGSHMLEDP   25 (220)
T ss_dssp             -------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9865544334556564886324698


No 57 
>>3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} (A:)
Probab=24.90  E-value=17  Score=14.89  Aligned_cols=18  Identities=11%  Similarity=0.096  Sum_probs=12.3

Q ss_pred             CHHHHHHHHHHHHHHHHC
Q ss_conf             944378999999999841
Q gi|254780598|r    1 MQKLFLAVGVSSLALASF   18 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~   18 (205)
                      |||.+++++++++++++.
T Consensus         1 Mkk~~~~~~~~~~~~~~l   18 (355)
T 3c9h_A            1 MRICLFLCLCLCMASPAL   18 (355)
T ss_dssp             ---------------CEE
T ss_pred             CCHHHHHHHHHHHHHHHH
T ss_conf             936999999999999999


No 58 
>>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} (A:1-195)
Probab=24.71  E-value=15  Score=15.04  Aligned_cols=19  Identities=0%  Similarity=-0.242  Sum_probs=9.3

Q ss_pred             CHHHHHHHHHHHHHHHHCC
Q ss_conf             9443789999999998410
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFC   19 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~   19 (205)
                      |||++..+.++.+++.+.+
T Consensus         6 mk~~~~~~~~~~~~~~~~~   24 (195)
T 1toa_A            6 HHHHDYDIPTTENLYFQGA   24 (195)
T ss_dssp             -------------------
T ss_pred             CCCCCCCCCCHHHHHHHHH
T ss_conf             4543357731699999999


No 59 
>>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} (A:)
Probab=24.27  E-value=19  Score=14.64  Aligned_cols=13  Identities=15%  Similarity=0.194  Sum_probs=7.4

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             9443789999999
Q gi|254780598|r    1 MQKLFLAVGVSSL   13 (205)
Q Consensus         1 Mkk~~la~av~~l   13 (205)
                      |||..+++++.++
T Consensus         1 Mk~~~~~~~~~~~   13 (290)
T 1twy_A            1 MSLIRMALAAVCA   13 (290)
T ss_dssp             -------------
T ss_pred             CCCHHHHHHHHHH
T ss_conf             9608999999999


No 60 
>>2gr8_A Adhesin; trimeric autotransporter, adhesion, protein secretion, microbial pathogenesis, membrane protein; 2.00A {Haemophilus influenzae} (A:)
Probab=23.87  E-value=38  Score=13.04  Aligned_cols=39  Identities=18%  Similarity=0.238  Sum_probs=23.9

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             99734661004886799999999750565566226999998539
Q gi|254780598|r  162 TAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      .+.+|+-+...++||.+++---...     ...-.+.+|++|+|
T Consensus        61 AvAvG~s~~~~n~~~~~~~~~s~~~-----~~~~~~gaGv~y~f   99 (99)
T 2gr8_A           61 GLAIGVSRISDNGKVIIRLSGTTNS-----QGKTGVAAGVGYQW   99 (99)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEET-----TCCCEEEEEEEEEC
T ss_pred             EEEEEEEEEEECCCEEEEEEEEECC-----CCCEEEEEEEEEEC
T ss_conf             6998878874178799999788548-----99779997777789


No 61 
>>2guf_A Vitamin B12 transporter BTUB; beta barrel, cubic mesophase, cobalamin, colicin, transport protein; HET: MPG; 1.95A {Escherichia coli} (A:134-594)
Probab=22.94  E-value=40  Score=12.94  Aligned_cols=18  Identities=22%  Similarity=0.469  Sum_probs=7.8

Q ss_pred             EEEEECCCEEEEEEEEEE
Q ss_conf             754312767789885447
Q gi|254780598|r  124 GGYEVSDSLLLYATVGPD  141 (205)
Q Consensus       124 ~Gy~~~~~~l~Y~~~G~a  141 (205)
                      +-|.+++.+.+|+..+-+
T Consensus       242 l~y~~~~~~~l~~s~~~~  259 (461)
T 2guf_A          242 AGWEFIEGYRFIASYGTS  259 (461)
T ss_dssp             EEEEEETTEEEEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCC
T ss_conf             122211122333322111


No 62 
>>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase; HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A* 2w5x_A* 2iuc_A 2iuc_B (A:1-304,A:338-375)
Probab=22.88  E-value=27  Score=13.80  Aligned_cols=16  Identities=19%  Similarity=0.158  Sum_probs=8.0

Q ss_pred             CHHHHHHHHHHHHHHH
Q ss_conf             9443789999999998
Q gi|254780598|r    1 MQKLFLAVGVSSLALA   16 (205)
Q Consensus         1 Mkk~~la~av~~lal~   16 (205)
                      ||+..+...+.++++.
T Consensus         1 M~~~~~~~~~~~~~~~   16 (342)
T 2w5v_A            1 MKLKKIVFTLIALGLF   16 (342)
T ss_dssp             ----------------
T ss_pred             CCCHHHHHHHHHHHHH
T ss_conf             9707999999999999


No 63 
>>3lay_A Zinc resistance-associated protein; salmonella typhimurium LT2, ZRAP, periplasm, structural genomics; 2.70A {Salmonella enterica subsp} (A:)
Probab=22.22  E-value=22  Score=14.31  Aligned_cols=17  Identities=6%  Similarity=-0.283  Sum_probs=8.7

Q ss_pred             CHHHHHHHHHHHHHHHH
Q ss_conf             94437899999999984
Q gi|254780598|r    1 MQKLFLAVGVSSLALAS   17 (205)
Q Consensus         1 Mkk~~la~av~~lal~~   17 (205)
                      |||+++.+.+.++++..
T Consensus        25 Mk~~~~~~~~~~~l~~~   41 (175)
T 3lay_A           25 MKRNNKSAIALIALSLL   41 (175)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             66899999999999999


No 64 
>>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} (A:)
Probab=21.38  E-value=23  Score=14.15  Aligned_cols=19  Identities=32%  Similarity=0.249  Sum_probs=11.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9443789999999998410000246
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad   25 (205)
                      |||.+|++      |+.++.|.|++
T Consensus         1 m~~~ila~------l~~~g~a~A~~   19 (314)
T 1us5_A            1 MRKPILAA------LTLAGLGLAQE   19 (314)
T ss_dssp             ----------------------CCE
T ss_pred             CCHHHHHH------HHHHHHHHHCC
T ss_conf             92799999------99733563441


Done!