HHsearch results for GI: 254780598 and protein with PDBid: 1uyn_X

>1uyn_X NALP; autotransporter, translocator domain, membrane protein, outer membrane, beta-domain, beta-barrel; HET: CXE; 2.6A {Neisseria meningitidis} SCOP: f.4.5.1 PDB: 1uyo_X*
Probab=98.87  E-value=1.2e-07  Score=55.92  Aligned_cols=128  Identities=22%  Similarity=0.217  Sum_probs=79.9

Q ss_pred             CCEEEEEEEEEEEC-CCEEEEEEEEEEECCCCCCC--------CCCC----CCCEEEEEEEEEEEEECCCEEEEEEEEEE
Q ss_conf             60268998546404-83799845101321555666--------6212----23214899989754312767789885447
Q gi|254780598|r   75 NAGGSIFAGYNVED-SCIMYGVEGDVRYTVPVLAD--------NIHS----LHGIGGSLRIRGGYEVSDSLLLYATVGPD  141 (205)
Q Consensus        75 ~~~~G~~~GYn~q~-~~~V~G~e~d~~~~~~~~~~--------~~~~----~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a  141 (205)
                      .....+.+||+|.. +++.+-..+.+.|...+.+.        ....    .......+..|+.+++++++-+++.+++.
T Consensus       154 ~~~~~~~~gy~~~~~~~~~l~P~~gl~y~~~~~~~f~E~g~~~~l~~~~~~~~~~~~~~Glr~~~~~~~~~~~~~~~~~~  233 (308)
T 1uyn_X          154 LMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWSGNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVE  233 (308)
T ss_dssp             EEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESCTTCCEECCEEEEEEEEEEEEEEEEECSSSEEEEEEEEEE
T ss_pred             EEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCEEEECCCCEEEECCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEE
T ss_conf             69999998777882696389799998999972366045077400487167401668999999998547716898887899


Q ss_pred             EEEEEEC----C----------CCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             7644431----3----------45556775204799734661004886799999999750565566226999998539
Q gi|254780598|r  142 VAQKYET----G----------KAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       142 ~~~~~~~----~----------~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      ..-....    .          .....+..+..+.+|+|+++ .++++|++.++|++.. + .+...|.+++|++|||
T Consensus       234 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~G~~~-~~~~~~~~~~~y~~~~-~-~~~~~~~~~~gl~y~F  308 (308)
T 1uyn_X          234 RDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADV-EFGNGWNGLARYSYAG-S-KQYGNHSGRVGVGYRF  308 (308)
T ss_dssp             EESSCCCCCCCC-----------------CCEEEEEEEEEEE-EEETTEEEEEEEEEEE-E-TTEEEEEEEEEEEEEC
T ss_pred             EECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEE-EECCCEEEEEEEEEEE-C-CCCEEEEEEEEEEEEC
T ss_conf             752799851799996488751577325788845999983999-9879999999999997-7-7850489999999989