HHsearch results for GI: 254780598 and protein with PDBid: 1uyn_X
>1uyn_X NALP; autotransporter, translocator domain, membrane protein, outer membrane, beta-domain, beta-barrel; HET: CXE; 2.6A {Neisseria meningitidis} SCOP: f.4.5.1 PDB: 1uyo_X*
Probab=98.87 E-value=1.2e-07 Score=55.92 Aligned_cols=128 Identities=22% Similarity=0.217 Sum_probs=79.9
Q ss_pred CCEEEEEEEEEEEC-CCEEEEEEEEEEECCCCCCC--------CCCC----CCCEEEEEEEEEEEEECCCEEEEEEEEEE
Q ss_conf 60268998546404-83799845101321555666--------6212----23214899989754312767789885447
Q gi|254780598|r 75 NAGGSIFAGYNVED-SCIMYGVEGDVRYTVPVLAD--------NIHS----LHGIGGSLRIRGGYEVSDSLLLYATVGPD 141 (205)
Q Consensus 75 ~~~~G~~~GYn~q~-~~~V~G~e~d~~~~~~~~~~--------~~~~----~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a 141 (205)
.....+.+||+|.. +++.+-..+.+.|...+.+. .... .......+..|+.+++++++-+++.+++.
T Consensus 154 ~~~~~~~~gy~~~~~~~~~l~P~~gl~y~~~~~~~f~E~g~~~~l~~~~~~~~~~~~~~Glr~~~~~~~~~~~~~~~~~~ 233 (308)
T 1uyn_X 154 LMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWSGNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVE 233 (308)
T ss_dssp EEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESCTTCCEECCEEEEEEEEEEEEEEEEECSSSEEEEEEEEEE
T ss_pred EEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCEEEECCCCEEEECCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEE
T ss_conf 69999998777882696389799998999972366045077400487167401668999999998547716898887899
Q ss_pred EEEEEEC----C----------CCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf 7644431----3----------45556775204799734661004886799999999750565566226999998539
Q gi|254780598|r 142 VAQKYET----G----------KAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205)
Q Consensus 142 ~~~~~~~----~----------~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205)
..-.... . .....+..+..+.+|+|+++ .++++|++.++|++.. + .+...|.+++|++|||
T Consensus 234 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~G~~~-~~~~~~~~~~~y~~~~-~-~~~~~~~~~~gl~y~F 308 (308)
T 1uyn_X 234 RDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADV-EFGNGWNGLARYSYAG-S-KQYGNHSGRVGVGYRF 308 (308)
T ss_dssp EESSCCCCCCCC-----------------CCEEEEEEEEEEE-EEETTEEEEEEEEEEE-E-TTEEEEEEEEEEEEEC
T ss_pred EECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEE-EECCCEEEEEEEEEEE-C-CCCEEEEEEEEEEEEC
T ss_conf 752799851799996488751577325788845999983999-9879999999999997-7-7850489999999989