HHSEARCH alignment of GI: 254780598 and SCOP domain: d2zfga1

Alignment

Probab=97.88  E-value=0.00035  Score=36.90  Aligned_cols=79  Identities=13%  Similarity=0.215  Sum_probs=46.8

Q ss_pred             EEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC----CCCEE
Q ss_conf             98975431276778988544776444313455567752047997346610048867999999997505655----66226
Q gi|254780598|r  121 RIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE----GFYNT  196 (205)
Q Consensus       121 ~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~----~~~~~  196 (205)
                      ...+.|.+.+.+.+.  +++...+.+......   +....-.+.+|++| .+++++.+-+||++.+....+    .+.+.
T Consensus       258 ~~~a~Y~~~~~~~~~--~~y~~~~~~~~~~~~---~~~~~~~~~vG~~Y-~lsk~~~~y~~Y~~~~~d~~~~~~~~~~~~  331 (340)
T d2zfga1         258 LLVAQYQFDFGLRPS--IAYTKSKAKDVEGIG---DVDLVNYFEVGATY-YFNKNMSTYVDYIINQIDSDNKLGVGSDDT  331 (340)
T ss_dssp             EEEEEECCTTSEEEE--EEEEEEEEEEETTTE---EEEEEEEEEEEEEE-EEETTEEEEEEEEEECCCTTCTTCCCCBCE
T ss_pred             EEEEEEEECCCEEEE--EEEEEEECCCCCCCC---CCCCEEEEEEEEEE-EECCCEEEEEEEEEECCCCCCCCCCCCCCE
T ss_conf             999999726765899--999999503566777---76634899999999-946998999999998225776677767879


Q ss_pred             EEEEEEEEC
Q ss_conf             999998539
Q gi|254780598|r  197 ISLGVGMKF  205 (205)
Q Consensus       197 ~~~G~~ykF  205 (205)
                      +.|||-|+|
T Consensus       332 ~~~G~ry~F  340 (340)
T d2zfga1         332 VAVGIVYQF  340 (340)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEC
T ss_conf             999999989

SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Porins
family: Porin
domain: Porin
species: Escherichia coli, different sequences [TaxId: 562]