Query         gi|254780598|ref|YP_003065011.1| outer membrane protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 205
No_of_seqs    139 out of 814
Neff          7.4 
Searched_HMMs 13730
Date          Wed Jun  1 10:26:26 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780598.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1qj8a_ f.4.1.1 (A:) Outer mem 100.0 4.4E-29 3.2E-33  164.8  15.8  141   61-205     6-148 (148)
  2 d1p4ta_ f.4.1.1 (A:) Outer mem  99.9   4E-24 2.9E-28  139.4  15.9  147   53-205     3-155 (155)
  3 d1qjpa_ f.4.1.1 (A:) Outer mem  99.9 5.2E-23 3.8E-27  133.7  17.2  148   54-205     5-170 (171)
  4 d1uynx_ f.4.5.1 (X:) Transloca  99.0 8.7E-09 6.3E-13   60.6  13.8  148   55-205   111-299 (299)
  5 d1phoa_ f.4.3.1 (A:) Porin {Es  98.0 0.00017 1.3E-08   38.5  19.1   44  161-205   283-330 (330)
  6 d1osma_ f.4.3.1 (A:) Porin {Kl  98.0 0.00022 1.6E-08   38.0  15.7   43  162-205   293-342 (342)
  7 d2zfga1 f.4.3.1 (A:1-340) Pori  97.9 0.00035 2.6E-08   36.9  17.2   79  121-205   258-340 (340)
  8 d1t16a_ f.4.3.4 (A:) Long-chai  97.8 0.00058 4.2E-08   35.8  15.4   49  156-205   320-377 (427)
  9 d3prna_ f.4.3.1 (A:) Porin {Rh  97.6 0.00096   7E-08   34.6  13.0   38  162-205   252-289 (289)
 10 d2fgqx1 f.4.3.1 (X:3-332) Pori  97.6   0.001 7.4E-08   34.5  14.8   45  160-205   269-330 (330)
 11 d1i78a_ f.4.4.1 (A:) Outer mem  97.5  0.0015 1.1E-07   33.6  15.5  129   75-205   125-297 (297)
 12 d1t16a_ f.4.3.4 (A:) Long-chai  97.4  0.0022 1.6E-07   32.8  16.1   84  119-205   326-421 (427)
 13 d2pora_ f.4.3.1 (A:) Porin {Rh  97.1  0.0038 2.8E-07   31.6  17.0   40  162-205   262-301 (301)
 14 d2vdfa1 f.4.4.2 (A:7-253) Oute  86.8     0.6 4.4E-05   20.3  10.9   51  155-205   177-247 (247)
 15 d2mpra_ f.4.3.2 (A:) Maltopori  36.9     8.9 0.00064   14.3  15.2   66  115-182   314-379 (427)
 16 d1a0tp_ f.4.3.2 (P:) Sucrose-s  20.3      18  0.0013   12.6  18.9  113   85-203   274-409 (413)

No 1  
>d1qj8a_ f.4.1.1 (A:) Outer membrane protein X (OMPX) {Escherichia coli [TaxId: 562]}
Probab=99.96  E-value=4.4e-29  Score=164.85  Aligned_cols=141  Identities=21%  Similarity=0.231  Sum_probs=113.3

Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCC-CCCCCCCEEEEEEEEEEEEECCCEEEEEEEE
Q ss_conf             233334466777776026899854640483799845101321555666-6212232148999897543127677898854
Q gi|254780598|r   61 SALYNGSFGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLAD-NIHSLHGIGGSLRIRGGYEVSDSLLLYATVG  139 (205)
Q Consensus        61 ~~g~~~~~~~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~-~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G  139 (205)
                      ..||+..+.+ ..++...|+.+||+||+.++++|+|+++.+.+.+... ..........++.+|..|++++++++|+++|
T Consensus         6 ~~Gy~~~d~~-~~~~~~~G~~lgy~y~~~n~~~gvE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~G   84 (148)
T d1qj8a_           6 TGGYAQSDAQ-GQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVG   84 (148)
T ss_dssp             EEEEEEEEET-TTEEEEEEEEEEEEEECTTCSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEECCC-CCCCCCCEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEECCCCEEEEEEEE
T ss_conf             9478962356-778861149999828917917999999998856783046631101588999888897477454989867


Q ss_pred             EEEEEEEECCC-CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             47764443134-5556775204799734661004886799999999750565566226999998539
Q gi|254780598|r  140 PDVAQKYETGK-AGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       140 ~a~~~~~~~~~-~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      +++.+.+.+.. ..+.+++..+|.+|+|+|| +|++||++|+||||+++++.+  .|++++|++|||
T Consensus        85 ~a~~~~~~~~~~~~~~~~~~~g~~~G~Gvey-~l~~n~~~~~eY~~~~~~~~d--~~~~~~Gv~YrF  148 (148)
T d1qj8a_          85 VGYGKFQTTEYPTYKNDTSDYGFSYGAGLQF-NPMENVALDFSYEQSRIRSVD--VGTWIAGVGYRF  148 (148)
T ss_dssp             EEEEEEEEEETTTEEEEEEEEEEEEEEEEEE-CSSTTEEEEEEEEEEEETTEE--EEEEEEEEEEEC
T ss_pred             EEEEEEEECCCCCCCCCCCCCCEEEEEEEEE-EECCCEEEEEEEEEEECCCCE--EEEEEEEEEEEC
T ss_conf             7899998413787655645444469621799-806887999999997479943--306999989889


No 2  
>d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]}
Probab=99.92  E-value=4e-24  Score=139.36  Aligned_cols=147  Identities=16%  Similarity=0.118  Sum_probs=112.0

Q ss_pred             CCCCCCCCCCCCCCCCCCC-CCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCC
Q ss_conf             4210001223333446677-777602689985464048379984510132155566662122321489998975431276
Q gi|254780598|r   53 FNGPYAGLSALYNGSFGEE-AHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDS  131 (205)
Q Consensus        53 w~G~y~g~~~g~~~~~~~~-~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~  131 (205)
                      -+|||++.++|+.....+. +.+++.+++.+||+|+  +|.+  |+++.+......... ....+...+.++..++..++
T Consensus         3 ~sGfYvg~~~g~~~~~~~~~~~~g~~~~~~~GY~f~--~~~~--e~~y~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~   77 (155)
T d1p4ta_           3 ASGFYVQADAAHAKASSSLGSAKGFSPRISAGYRIN--DLRF--AVDYTRYKNYKAPST-DFKLYSIGASAIYDFDTQSP   77 (155)
T ss_dssp             CEEEEEEEEEEEEEEECSSCEEEEECCEEEEEEEET--TEEE--EEEEEEEEESSCCSS-CCEEEEEEEEEEEECCCSSS
T ss_pred             CCCEEEEEEEEEEECCCCCCCCCCEEEEEEEEEECC--CEEE--EEEEEECCCCCCCCC-CCCEEEEEEEEEEEECCCCC
T ss_conf             876089888278803167667886507999999818--9999--999997145344575-20002503899998438884


Q ss_pred             EEEEEEEEEEEEEEEECCCC-CCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC----CCCEEEEEEEEEEC
Q ss_conf             77898854477644431345-5567752047997346610048867999999997505655----66226999998539
Q gi|254780598|r  132 LLLYATVGPDVAQKYETGKA-GEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE----GFYNTISLGVGMKF  205 (205)
Q Consensus       132 ~l~Y~~~G~a~~~~~~~~~~-~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~----~~~~~~~~G~~ykF  205 (205)
                      +.||+++|+++++.+.+... ...+++..+|.+|+|+|| +|+|||++++||||+++++.+    .+.|.+++|+.|||
T Consensus        78 ~~py~~~G~g~~~~~~~~~~~~~~~~~~~~~~~g~G~~y-~lt~n~~~~~eyry~~~~~~~~~~~~~~~~~~~Gl~Y~F  155 (155)
T d1p4ta_          78 VKPYLGARLSLNRASVDLGGSDSFSQTSIGLGVLTGVSY-AVTPNVDLDAGYRYNYIGKVNTVKNVRSGELSAGVRVKF  155 (155)
T ss_dssp             EEEEEEEEEEEEEEEEEETTEEEECCCEEEEEEEEEEEE-EEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEC
T ss_pred             EEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEC
T ss_conf             528999866789845213552102676362589989999-935998999999999756876675311049999999989


No 3  
>d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=99.91  E-value=5.2e-23  Score=133.67  Aligned_cols=148  Identities=22%  Similarity=0.318  Sum_probs=111.3

Q ss_pred             CCCCCCCCCCCCCCC--------CCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCC---CCCCCEEEEEEE
Q ss_conf             210001223333446--------677777602689985464048379984510132155566662---122321489998
Q gi|254780598|r   54 NGPYAGLSALYNGSF--------GEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNI---HSLHGIGGSLRI  122 (205)
Q Consensus        54 ~G~y~g~~~g~~~~~--------~~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~---~~~~~~~~~~~~  122 (205)
                      ..+|+|+++|+....        ...+.++..+++++||+|+..   +++|+.+.+.+.......   ........++.+
T Consensus         5 ~~wYvG~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~GY~fn~~---~~vE~~y~~~g~~~~~~~~~~~~~~~~~~~l~~   81 (171)
T d1qjpa_           5 NTWYTGAKLGWSQYHDTGLINNNGPTHENKLGAGAFGGYQVNPY---VGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTA   81 (171)
T ss_dssp             TEEEEEEEEEEEC-------------CCCEEEEEEEEEEEEETT---EEEEEEEEEEEECCC-------CEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCC---EEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEE
T ss_conf             97999999825996244433788633578706889998870775---899999974587421266655406888889999


Q ss_pred             EEEEEECCCEEEEEEEEEEEEEEEECCC-CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC------CCCCCE
Q ss_conf             9754312767789885447764443134-555677520479973466100488679999999975056------556622
Q gi|254780598|r  123 RGGYEVSDSLLLYATVGPDVAQKYETGK-AGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK------VEGFYN  195 (205)
Q Consensus       123 r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~-~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~------~~~~~~  195 (205)
                      |..|++++++.+|+++|++.++.+.+.. ..+.+++..++.+|+|+|| +|+++|++|+||||.+..+      .+.+.|
T Consensus        82 ~~~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~y-~i~~~~~l~~ey~~~~~~~~~~~~~~~~~~~  160 (171)
T d1qjpa_          82 KLGYPITDDLDIYTRLGGMVWRADTYSNVYGKNHDTGVSPVFAGGVEY-AITPEIATRLEYQWTNNIGDAHTIGTRPDNG  160 (171)
T ss_dssp             EEEEESSSSEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEE-EEETTEEEEEEEEEEC--------------C
T ss_pred             EEEEECCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCCCCCCC
T ss_conf             999853886069898616999988411445620468515679827999-9279979999999996258655545432244


Q ss_pred             EEEEEEEEEC
Q ss_conf             6999998539
Q gi|254780598|r  196 TISLGVGMKF  205 (205)
Q Consensus       196 ~~~~G~~ykF  205 (205)
                      .+++|++|||
T Consensus       161 ~~~~G~~Y~F  170 (171)
T d1qjpa_         161 MLSLGVSYRF  170 (171)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEC
T ss_conf             8999999988


No 4  
>d1uynx_ f.4.5.1 (X:) Translocator domain of NalP {Neisseria meningitidis [TaxId: 487]}
Probab=99.00  E-value=8.7e-09  Score=60.57  Aligned_cols=148  Identities=20%  Similarity=0.133  Sum_probs=91.6

Q ss_pred             CCCCCCCCCCCCCCCCC--------------CCCCCEEEEEEEEEEEC-CCEEEEEEEEEEECCCCCCC--------CCC
Q ss_conf             10001223333446677--------------77760268998546404-83799845101321555666--------621
Q gi|254780598|r   55 GPYAGLSALYNGSFGEE--------------AHHNAGGSIFAGYNVED-SCIMYGVEGDVRYTVPVLAD--------NIH  111 (205)
Q Consensus        55 G~y~g~~~g~~~~~~~~--------------~~~~~~~G~~~GYn~q~-~~~V~G~e~d~~~~~~~~~~--------~~~  111 (205)
                      +.|+-+.+++++...+.              +.......+.+||+|+. +.+.+-..+.+.|...+.+.        ...
T Consensus       111 ~~y~~~~l~~~~~~~~~~R~~~~~~~~~g~~~~~~~~~~~e~Gy~~~~~~~~~l~P~~~l~y~~~~~d~y~E~g~~~~l~  190 (299)
T d1uynx_         111 IGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWS  190 (299)
T ss_dssp             TEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESCTTCCE
T ss_pred             CEEEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEECCCEEEECCCCCEE
T ss_conf             73578887268973225773056641035673118999999867785189669999877677788547707766753111


Q ss_pred             CC----CCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECC--------------CCCCCCCCCEEEEEEEEEEEECCC
Q ss_conf             22----321489998975431276778988544776444313--------------455567752047997346610048
Q gi|254780598|r  112 SL----HGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETG--------------KAGEITPIAIGGTAGVGVEVGGLS  173 (205)
Q Consensus       112 ~~----~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~--------------~~~~~~~~~~g~~~G~Gvey~~it  173 (205)
                      ..    ......+..|+.+.++..+-|++++++..--.+.+.              .....+..+..+.+|+|+++ .++
T Consensus       191 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~-~~~  269 (299)
T d1uynx_         191 GNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADV-EFG  269 (299)
T ss_dssp             ECCEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEESSCCCCCCCC-----------------CCEEEEEEEEEEE-EEE
T ss_pred             ECCCCEEEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEE-EEC
T ss_conf             0265326888974479986337723788999999970699820589986168750367235788842999985999-988


Q ss_pred             CCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             86799999999750565566226999998539
Q gi|254780598|r  174 ESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       174 ~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      ++|++.++|++.. + .+.+.|.+++||.|||
T Consensus       270 ~~~~l~~~y~~~~-~-~~~~~~~~~~gl~y~F  299 (299)
T d1uynx_         270 NGWNGLARYSYAG-S-KQYGNHSGRVGVGYRF  299 (299)
T ss_dssp             TTEEEEEEEEEEE-E-TTEEEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEE-C-CCCCEEEEEEEEEEEC
T ss_conf             9999999999996-6-7851179999999989


No 5  
>d1phoa_ f.4.3.1 (A:) Porin {Escherichia coli, different sequences [TaxId: 562]}
Probab=98.04  E-value=0.00017  Score=38.48  Aligned_cols=44  Identities=14%  Similarity=0.315  Sum_probs=34.9

Q ss_pred             EEEEEEEEEECCCCCEEEEEEEEEEECCCCC----CCCEEEEEEEEEEC
Q ss_conf             7997346610048867999999997505655----66226999998539
Q gi|254780598|r  161 GTAGVGVEVGGLSESLVARLEYRASKYSKVE----GFYNTISLGVGMKF  205 (205)
Q Consensus       161 ~~~G~Gvey~~it~~~~~r~EY~y~df~~~~----~~~~~~~~G~~ykF  205 (205)
                      -.+-+|++| .++++..+.+||++.+....+    .+.+.+.|||.|+|
T Consensus       283 ~~~~vG~~Y-~lsk~~~~yaey~~~~~d~~~~~~~~~~~~~~vGlr~~F  330 (330)
T d1phoa_         283 NYIDVGATY-YFNKNMSAFVDYKINQLDSDNKLNINNDDIVAVGMTYQF  330 (330)
T ss_dssp             EEEEEEEEE-ESSSSEEEEEEEEEECCCSSCTTCCCCCCEEEEEEEEEC
T ss_pred             EEEEEEEEE-EECCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             899999999-907998999999997145766577666889999999989


No 6  
>d1osma_ f.4.3.1 (A:) Porin {Klebsiella pneumoniae [TaxId: 573]}
Probab=97.99  E-value=0.00022  Score=37.97  Aligned_cols=43  Identities=14%  Similarity=0.312  Sum_probs=34.8

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEECCCCC-------CCCEEEEEEEEEEC
Q ss_conf             997346610048867999999997505655-------66226999998539
Q gi|254780598|r  162 TAGVGVEVGGLSESLVARLEYRASKYSKVE-------GFYNTISLGVGMKF  205 (205)
Q Consensus       162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~~-------~~~~~~~~G~~ykF  205 (205)
                      .+-+|++| .|+++..+-+||++.+..+.+       .+.+.|.|||-|+|
T Consensus       293 ~~~~G~~Y-~lsKrt~~Y~~y~~~~~~~~~~~~~~~~~~~~~~~~G~r~~F  342 (342)
T d1osma_         293 YVDVGATY-YFNKNMSTYVDYKINLLDDNSFTRSAGISTDDVVALGLVYQF  342 (342)
T ss_dssp             EEEEEEEE-EEETTEEEEEEEEEECCCCCHHHHHHTCCCSCEEEEEEEEEC
T ss_pred             EEEEEEEE-EECCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             99999999-965898999999998156743234467666778999999989


No 7  
>d2zfga1 f.4.3.1 (A:1-340) Porin {Escherichia coli, different sequences [TaxId: 562]}
Probab=97.88  E-value=0.00035  Score=36.90  Aligned_cols=79  Identities=13%  Similarity=0.215  Sum_probs=46.8

Q ss_pred             EEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC----CCCEE
Q ss_conf             98975431276778988544776444313455567752047997346610048867999999997505655----66226
Q gi|254780598|r  121 RIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE----GFYNT  196 (205)
Q Consensus       121 ~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~----~~~~~  196 (205)
                      ...+.|.+.+.+.+.  +++...+.+......   +....-.+.+|++| .+++++.+-+||++.+....+    .+.+.
T Consensus       258 ~~~a~Y~~~~~~~~~--~~y~~~~~~~~~~~~---~~~~~~~~~vG~~Y-~lsk~~~~y~~Y~~~~~d~~~~~~~~~~~~  331 (340)
T d2zfga1         258 LLVAQYQFDFGLRPS--IAYTKSKAKDVEGIG---DVDLVNYFEVGATY-YFNKNMSTYVDYIINQIDSDNKLGVGSDDT  331 (340)
T ss_dssp             EEEEEECCTTSEEEE--EEEEEEEEEEETTTE---EEEEEEEEEEEEEE-EEETTEEEEEEEEEECCCTTCTTCCCCBCE
T ss_pred             EEEEEEEECCCEEEE--EEEEEEECCCCCCCC---CCCCEEEEEEEEEE-EECCCEEEEEEEEEECCCCCCCCCCCCCCE
T ss_conf             999999726765899--999999503566777---76634899999999-946998999999998225776677767879


Q ss_pred             EEEEEEEEC
Q ss_conf             999998539
Q gi|254780598|r  197 ISLGVGMKF  205 (205)
Q Consensus       197 ~~~G~~ykF  205 (205)
                      +.|||-|+|
T Consensus       332 ~~~G~ry~F  340 (340)
T d2zfga1         332 VAVGIVYQF  340 (340)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEC
T ss_conf             999999989


No 8  
>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}
Probab=97.75  E-value=0.00058  Score=35.77  Aligned_cols=49  Identities=10%  Similarity=-0.034  Sum_probs=35.9

Q ss_pred             CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECC---------CCCCCCEEEEEEEEEEC
Q ss_conf             752047997346610048867999999997505---------65566226999998539
Q gi|254780598|r  156 PIAIGGTAGVGVEVGGLSESLVARLEYRASKYS---------KVEGFYNTISLGVGMKF  205 (205)
Q Consensus       156 ~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~---------~~~~~~~~~~~G~~ykF  205 (205)
                      ..+..+++.+|+|| .++++|.+|+-|.|..=.         ..+.+.+.+++|++|+|
T Consensus       320 ~~~~~~~~~~G~ey-~~~~~l~lR~Gy~y~~~~~~~~~~~~~~p~~~~~~~s~G~~~~~  377 (427)
T d1t16a_         320 GFKDAYRIALGTTY-YYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAF  377 (427)
T ss_dssp             CCCCEEEEEEEEEE-CCSSSEEEEEEEEEECCSSCTTTCCSSSCCCCEEEEEEEEEEES
T ss_pred             CCCCEEEEEEEEEE-EECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
T ss_conf             53314899987899-83566999999997467777655464346789889998898984


No 9  
>d3prna_ f.4.3.1 (A:) Porin {Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]}
Probab=97.62  E-value=0.00096  Score=34.65  Aligned_cols=38  Identities=16%  Similarity=0.325  Sum_probs=30.2

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             99734661004886799999999750565566226999998539
Q gi|254780598|r  162 TAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      .+++|++| .|+++.++.++|.+.+-.+     ....+||.|+|
T Consensus       252 ~~~lg~~Y-~ls~~~~l~a~~~~~~~~~-----~~a~~Gv~~~F  289 (289)
T d3prna_         252 AYGIGADY-QFAEGVKVSGSVQSGFANE-----TVADVGVRFDF  289 (289)
T ss_dssp             EEEEEEEE-EEETTEEEEEEEEECTTCC-----EEEEEEEEEEC
T ss_pred             EEEEEEEE-ECCCCEEEEEEEEEEECCC-----CEEEEEEEEEC
T ss_conf             89999999-8499849999999980898-----25725657769


No 10 
>d2fgqx1 f.4.3.1 (X:3-332) Porin {Comamonas acidovorans [TaxId: 80866]}
Probab=97.60  E-value=0.001  Score=34.53  Aligned_cols=45  Identities=13%  Similarity=0.087  Sum_probs=33.7

Q ss_pred             EEEEEEEEEEECCCCCEEEEEEEEEEECCCCC-----------------CCCEEEEEEEEEEC
Q ss_conf             47997346610048867999999997505655-----------------66226999998539
Q gi|254780598|r  160 GGTAGVGVEVGGLSESLVARLEYRASKYSKVE-----------------GFYNTISLGVGMKF  205 (205)
Q Consensus       160 g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~-----------------~~~~~~~~G~~ykF  205 (205)
                      .-.+.+|++| .|+++..+-+||-|.+..+..                 .+...|.+||.++|
T Consensus       269 ~~~~~lg~~Y-~lSKrT~lYa~~~y~~n~~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~rh~F  330 (330)
T d2fgqx1         269 AHQITLGYVH-NLSKRTALYGNLAFLKNKDASTLGLQAKGVYAGGVQAGESQTGVQVGIRHAF  330 (330)
T ss_dssp             EEEEEEEEEE-ESSSSEEEEEEEEEEEECTTCCCCCCBTTTBCSCCCTTCEEEEEEEEEEEEC
T ss_pred             CEEEEEEEEE-ECCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEEC
T ss_conf             2499999999-7567618744206511258774210111001578789987599999989989


No 11 
>d1i78a_ f.4.4.1 (A:) Outer membrane protease OMPT {Escherichia coli [TaxId: 562]}
Probab=97.48  E-value=0.0015  Score=33.62  Aligned_cols=129  Identities=12%  Similarity=0.024  Sum_probs=65.7

Q ss_pred             CCEEEEEEEEEEECCCEE-EEEEEEEEECCCCCCC---------CCCCCCCEEE-EEEEEEEEEECCCEEEEEEEEEE-E
Q ss_conf             602689985464048379-9845101321555666---------6212232148-99989754312767789885447-7
Q gi|254780598|r   75 NAGGSIFAGYNVEDSCIM-YGVEGDVRYTVPVLAD---------NIHSLHGIGG-SLRIRGGYEVSDSLLLYATVGPD-V  142 (205)
Q Consensus        75 ~~~~G~~~GYn~q~~~~V-~G~e~d~~~~~~~~~~---------~~~~~~~~~~-~~~~r~Gy~~~~~~l~Y~~~G~a-~  142 (205)
                      +...++++||+++.-.|- .|.-.-+........+         ...-++.|.+ -+.....|.+ +++.+-+...+. +
T Consensus       125 ~y~lg~~~Gyqy~~~~wtAyGGsy~y~~~~~~r~~~g~~p~~~~~ItY~q~~~~~yiGL~g~y~~-~~~~f~~~l~ys~w  203 (297)
T d1i78a_         125 NYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDIGSFPNGERAIGYKQRFKMPYIGLTGSYRY-EDFELGGTFKYSGW  203 (297)
T ss_dssp             SEEEEEEEEEEEEEEEEEEECCEEEBCCTTCSSCBCCBCCTTCSEEEEEEEEEEEEEEEEEEEEE-TTEEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEEECCEEECCCCEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEE-CCEEEEEEEEECEE
T ss_conf             75897773148752436734754783798876543465678862677776876778867789980-66599888850314


Q ss_pred             EEEEEC---------CCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC----------------------
Q ss_conf             644431---------3455567752047997346610048867999999997505655----------------------
Q gi|254780598|r  143 AQKYET---------GKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE----------------------  191 (205)
Q Consensus       143 ~~~~~~---------~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~----------------------  191 (205)
                      .+.+..         .......+...+|.+.+.++| .|||++++-+|++|..+...+                      
T Consensus       204 v~a~d~D~H~lR~~~~~f~~~~~~~~~~~v~~~a~Y-~vt~~~s~~ve~~y~~~~~~~G~t~~~~~~tg~ss~~~d~ag~  282 (297)
T d1i78a_         204 VESSDNDEHYDPKGRITYRSKVKDQNYYSVAVNAGY-YVTPNAKVYVEGAWNRVTNKKGNTSLYDHNNNTSDYSKNGAGI  282 (297)
T ss_dssp             EEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEEEE-EEETTEEEEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred             EECCCCCCCEECCCCCCCCCCCCCCCEEEEEEEEEE-EECCCEEEEEEEEEEEEEEECCCCEEEECCCCEEEECCCCCCC
T ss_conf             303788422003577544303688657999998879-9789879999999999980148638996588726731575571


Q ss_pred             -CCCEEEEEEEEEEC
Q ss_conf             -66226999998539
Q gi|254780598|r  192 -GFYNTISLGVGMKF  205 (205)
Q Consensus       192 -~~~~~~~~G~~ykF  205 (205)
                       ...-++++|+-|||
T Consensus       283 ~~~~~tis~Gl~y~F  297 (297)
T d1i78a_         283 ENYNFITTAGLKYTF  297 (297)
T ss_dssp             EEEEEEEEEEEEEEC
T ss_pred             EECCEEEEEEEEEEC
T ss_conf             201429998445659


No 12 
>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}
Probab=97.36  E-value=0.0022  Score=32.82  Aligned_cols=84  Identities=10%  Similarity=0.016  Sum_probs=45.0

Q ss_pred             EEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCC-CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC------
Q ss_conf             99989754312767789885447764443134555-67752047997346610048867999999997505655------
Q gi|254780598|r  119 SLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGE-ITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE------  191 (205)
Q Consensus       119 ~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~-~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~------  191 (205)
                      .++.-+.|.+++++  -.++|+.+-..-....... .......+.+.+|+.| .+++++.+.+-|+|....+++      
T Consensus       326 ~~~~G~ey~~~~~l--~lR~Gy~y~~~~~~~~~~~~~~p~~~~~~~s~G~~~-~~~~~~~id~a~~y~~~~~~~~~~~~~  402 (427)
T d1t16a_         326 RIALGTTYYYDDNW--TFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTY-AFNKDASVDVGVSYMHGQSVKINEGPY  402 (427)
T ss_dssp             EEEEEEEECCSSSE--EEEEEEEEECCSSCTTTCCSSSCCCCEEEEEEEEEE-ESSSSEEEEEEEEEEEECCEEEEETTE
T ss_pred             EEEEEEEEEECCCE--EEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEE-ECCCCEEEEEEEEEEECCCCCCCCCCC
T ss_conf             99987899835669--999999974677776554643467898899988989-848986999999999747531026730


Q ss_pred             -----CCCEEEEEEEEEEC
Q ss_conf             -----66226999998539
Q gi|254780598|r  192 -----GFYNTISLGVGMKF  205 (205)
Q Consensus       192 -----~~~~~~~~G~~ykF  205 (205)
                           .+.+.+.++++|||
T Consensus       403 ~~~~~~~~~~~~~~~~y~F  421 (427)
T d1t16a_         403 QFESEGKAWLFGTNFNYAF  421 (427)
T ss_dssp             EEEEEEEEEEEEEEEEEEC
T ss_pred             EEEEEEEEEEEEEEEEEEE
T ss_conf             0478878999999999995


No 13 
>d2pora_ f.4.3.1 (A:) Porin {Rhodobacter capsulatus [TaxId: 1061]}
Probab=97.15  E-value=0.0038  Score=31.58  Aligned_cols=40  Identities=20%  Similarity=0.182  Sum_probs=34.0

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             99734661004886799999999750565566226999998539
Q gi|254780598|r  162 TAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      .+++|++| .|++++.+.++|.+.+..+   +.+.+.+||.|+|
T Consensus       262 ~~~lG~~Y-~Lsk~t~ly~~y~~~~~d~---~~~~~~~G~~~~F  301 (301)
T d2pora_         262 YYGLGASY-DLGGGASIVGGIADNDLPN---SDMVADLGVKFKF  301 (301)
T ss_dssp             EEEEEEEE-EEETTEEEEEEEEEECSSS---CCCEEEEEEEEEC
T ss_pred             EEEEEEEE-ECCCCEEEEEEEEEEECCC---CCEEEEEEEEEEC
T ss_conf             99999999-7899979999999983589---8737999649989


No 14 
>d2vdfa1 f.4.4.2 (A:7-253) Outer membrane adhesin/invasin OpcA {Neisseria meningitidis [TaxId: 487]}
Probab=86.77  E-value=0.6  Score=20.29  Aligned_cols=51  Identities=25%  Similarity=0.369  Sum_probs=31.3

Q ss_pred             CCCCEEEEEEEEEEE-ECCCCCEEEEEE--EEEEECCCCC-----------------CCCEEEEEEEEEEC
Q ss_conf             775204799734661-004886799999--9997505655-----------------66226999998539
Q gi|254780598|r  155 TPIAIGGTAGVGVEV-GGLSESLVARLE--YRASKYSKVE-----------------GFYNTISLGVGMKF  205 (205)
Q Consensus       155 ~~~~~g~~~G~Gvey-~~it~~~~~r~E--Y~y~df~~~~-----------------~~~~~~~~G~~ykF  205 (205)
                      +...-||.+|+|+.. .++++.+.+-.|  |||-...+.+                 ...+.+-+.++++|
T Consensus       177 n~k~kG~G~glg~~i~KqL~d~~~l~fgPfyRyW~Ik~S~~~~~~~~~g~~~~~EPkNkt~EyGlrvsv~F  247 (247)
T d2vdfa1         177 NQKTNGWGFGLGANIGKKLGESASIEAGPFYKQRTYKESGEFSVTTKSGDVSLTIPKTSIREYGLRVGIKF  247 (247)
T ss_dssp             EEECCEEEEEEEEEEEEECC--CEEEEEEEEEEEEECCCCCBCC-------CBCCCCEEEEEEEEEEEEEC
T ss_pred             HHHCCCEEEEEEEEHHHHCCCCCCEEECCEEEEEEECCCCCEEEEECCCCEEEECCCCCCCEEEEEEEEEC
T ss_conf             33216711786336333105543055423046543236756478505873468647875422326788629


No 15 
>d2mpra_ f.4.3.2 (A:) Maltoporin (also LamB protein) {Salmonella typhimurium [TaxId: 90371]}
Probab=36.95  E-value=8.9  Score=14.28  Aligned_cols=66  Identities=15%  Similarity=0.133  Sum_probs=39.6

Q ss_pred             CEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEE
Q ss_conf             21489998975431276778988544776444313455567752047997346610048867999999
Q gi|254780598|r  115 GIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEY  182 (205)
Q Consensus       115 ~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY  182 (205)
                      .| .++.+|+-|.+++.+.+-.-+||...+.+......+.-+.-..+++-+|-.+ .--|.+-+-+-|
T Consensus       314 ~w-~s~~~Rp~y~~~~~~~~~~E~gy~~~~~~~~g~~~~~~K~TiApt~~~g~~f-~sRPelR~faTy  379 (427)
T d2mpra_         314 EW-WTVGVRPMYKWTPIMSTLLEVGYDNVKSQQTGDRNNQYKITLAQQWQAGDSI-WSRPAIRIFATY  379 (427)
T ss_dssp             EE-EEEEEEEEEEEETTEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEESSSST-TCCSEEEEEEEE
T ss_pred             EE-EEEEEEEEEEECCHHEEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCC-CCCCEEEEEEEE
T ss_conf             79-9998778555200110555745653125787765750689998602007987-778579999999


No 16 
>d1a0tp_ f.4.3.2 (P:) Sucrose-specific porin {Enterobacterium (Salmonella typhimurium) [TaxId: 90371]}
Probab=20.26  E-value=18  Score=12.64  Aligned_cols=113  Identities=13%  Similarity=-0.030  Sum_probs=59.4

Q ss_pred             EEEC-CCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCC------
Q ss_conf             6404-837998451013215556666212232148999897543127677898854477644431345556775------
Q gi|254780598|r   85 NVED-SCIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPI------  157 (205)
Q Consensus        85 n~q~-~~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~------  157 (205)
                      .+++ ++|-++..+-+.+........  .+..| .++.+|+-|.+++.+-+-..+||...+.+..+........      
T Consensus       274 ~~~~~~~~~~~~~~~y~~~~d~~~~~--~~~~~-~s~gvRP~y~~~~~~~~~~E~gy~~~~~~~~g~~~~~~~~~~~~K~  350 (413)
T d1a0tp_         274 TTPLSENWSVAPAMLAQRSKDRYADG--DSYQW-ATFNLRLIQAINQNFALAYEGSYQYMDLKPEGYNDRQAVNGSFYKL  350 (413)
T ss_dssp             EEESSSSEEEEEEEEEEEEESSSSTT--CEEEE-EEEEEEEEEESSSSEEEEEEEEEEEEEEECTTGGGCCCEEEEEEEE
T ss_pred             CEECCCCEEEEEEEEEEEECCCCCCC--CCCEE-EEEEEEEEEEECCCEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf             44135876776668999851667789--97079-9999888589668689999988866403446753666667835899


Q ss_pred             CEEEEEEEEE--EEECCCCCEEEEEEEEEEECCCC--------------CCCCEEEEEEEEE
Q ss_conf             2047997346--61004886799999999750565--------------5662269999985
Q gi|254780598|r  158 AIGGTAGVGV--EVGGLSESLVARLEYRASKYSKV--------------EGFYNTISLGVGM  203 (205)
Q Consensus       158 ~~g~~~G~Gv--ey~~it~~~~~r~EY~y~df~~~--------------~~~~~~~~~G~~y  203 (205)
                      -...++-+|-  ++   -.+=.+|+=+.|.+..+.              ....+.+.+|+-.
T Consensus       351 TlA~~~~~g~~~~f---wsRPeiR~faTY~~w~~~~~~~~~~~~~~~~~~~~~~~~~fGvQ~  409 (413)
T d1a0tp_         351 TFAPTFKVGSIGDF---FSRPEIRFYTSWMDWSKKLNNYASDDALGSDGFNSGGEWSFGVQM  409 (413)
T ss_dssp             EEEEEEESSCTTCT---TCCCEEEEEEEEEEECGGGGGSCSSSSTTBTTBCSSCEEEEEEEE
T ss_pred             EEEEEECCCCCCCC---CCCCEEEEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf             99763132897876---779789999999805412200224565454677888878999999


Done!