Query gi|254780598|ref|YP_003065011.1| outer membrane protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 205 No_of_seqs 139 out of 814 Neff 7.4 Searched_HMMs 13730 Date Wed Jun 1 10:26:26 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780598.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1qj8a_ f.4.1.1 (A:) Outer mem 100.0 4.4E-29 3.2E-33 164.8 15.8 141 61-205 6-148 (148) 2 d1p4ta_ f.4.1.1 (A:) Outer mem 99.9 4E-24 2.9E-28 139.4 15.9 147 53-205 3-155 (155) 3 d1qjpa_ f.4.1.1 (A:) Outer mem 99.9 5.2E-23 3.8E-27 133.7 17.2 148 54-205 5-170 (171) 4 d1uynx_ f.4.5.1 (X:) Transloca 99.0 8.7E-09 6.3E-13 60.6 13.8 148 55-205 111-299 (299) 5 d1phoa_ f.4.3.1 (A:) Porin {Es 98.0 0.00017 1.3E-08 38.5 19.1 44 161-205 283-330 (330) 6 d1osma_ f.4.3.1 (A:) Porin {Kl 98.0 0.00022 1.6E-08 38.0 15.7 43 162-205 293-342 (342) 7 d2zfga1 f.4.3.1 (A:1-340) Pori 97.9 0.00035 2.6E-08 36.9 17.2 79 121-205 258-340 (340) 8 d1t16a_ f.4.3.4 (A:) Long-chai 97.8 0.00058 4.2E-08 35.8 15.4 49 156-205 320-377 (427) 9 d3prna_ f.4.3.1 (A:) Porin {Rh 97.6 0.00096 7E-08 34.6 13.0 38 162-205 252-289 (289) 10 d2fgqx1 f.4.3.1 (X:3-332) Pori 97.6 0.001 7.4E-08 34.5 14.8 45 160-205 269-330 (330) 11 d1i78a_ f.4.4.1 (A:) Outer mem 97.5 0.0015 1.1E-07 33.6 15.5 129 75-205 125-297 (297) 12 d1t16a_ f.4.3.4 (A:) Long-chai 97.4 0.0022 1.6E-07 32.8 16.1 84 119-205 326-421 (427) 13 d2pora_ f.4.3.1 (A:) Porin {Rh 97.1 0.0038 2.8E-07 31.6 17.0 40 162-205 262-301 (301) 14 d2vdfa1 f.4.4.2 (A:7-253) Oute 86.8 0.6 4.4E-05 20.3 10.9 51 155-205 177-247 (247) 15 d2mpra_ f.4.3.2 (A:) Maltopori 36.9 8.9 0.00064 14.3 15.2 66 115-182 314-379 (427) 16 d1a0tp_ f.4.3.2 (P:) Sucrose-s 20.3 18 0.0013 12.6 18.9 113 85-203 274-409 (413) No 1 >d1qj8a_ f.4.1.1 (A:) Outer membrane protein X (OMPX) {Escherichia coli [TaxId: 562]} Probab=99.96 E-value=4.4e-29 Score=164.85 Aligned_cols=141 Identities=21% Similarity=0.231 Sum_probs=113.3 Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCC-CCCCCCCEEEEEEEEEEEEECCCEEEEEEEE Q ss_conf 233334466777776026899854640483799845101321555666-6212232148999897543127677898854 Q gi|254780598|r 61 SALYNGSFGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLAD-NIHSLHGIGGSLRIRGGYEVSDSLLLYATVG 139 (205) Q Consensus 61 ~~g~~~~~~~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~-~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G 139 (205) ..||+..+.+ ..++...|+.+||+||+.++++|+|+++.+.+.+... ..........++.+|..|++++++++|+++| T Consensus 6 ~~Gy~~~d~~-~~~~~~~G~~lgy~y~~~n~~~gvE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~G 84 (148) T d1qj8a_ 6 TGGYAQSDAQ-GQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVG 84 (148) T ss_dssp EEEEEEEEET-TTEEEEEEEEEEEEEECTTCSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTEEEEEEEE T ss_pred EEEEEEECCC-CCCCCCCEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEECCCCEEEEEEEE T ss_conf 9478962356-778861149999828917917999999998856783046631101588999888897477454989867 Q ss_pred EEEEEEEECCC-CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC Q ss_conf 47764443134-5556775204799734661004886799999999750565566226999998539 Q gi|254780598|r 140 PDVAQKYETGK-AGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205) Q Consensus 140 ~a~~~~~~~~~-~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205) +++.+.+.+.. ..+.+++..+|.+|+|+|| +|++||++|+||||+++++.+ .|++++|++||| T Consensus 85 ~a~~~~~~~~~~~~~~~~~~~g~~~G~Gvey-~l~~n~~~~~eY~~~~~~~~d--~~~~~~Gv~YrF 148 (148) T d1qj8a_ 85 VGYGKFQTTEYPTYKNDTSDYGFSYGAGLQF-NPMENVALDFSYEQSRIRSVD--VGTWIAGVGYRF 148 (148) T ss_dssp EEEEEEEEEETTTEEEEEEEEEEEEEEEEEE-CSSTTEEEEEEEEEEEETTEE--EEEEEEEEEEEC T ss_pred EEEEEEEECCCCCCCCCCCCCCEEEEEEEEE-EECCCEEEEEEEEEEECCCCE--EEEEEEEEEEEC T ss_conf 7899998413787655645444469621799-806887999999997479943--306999989889 No 2 >d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]} Probab=99.92 E-value=4e-24 Score=139.36 Aligned_cols=147 Identities=16% Similarity=0.118 Sum_probs=112.0 Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCC Q ss_conf 4210001223333446677-777602689985464048379984510132155566662122321489998975431276 Q gi|254780598|r 53 FNGPYAGLSALYNGSFGEE-AHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDS 131 (205) Q Consensus 53 w~G~y~g~~~g~~~~~~~~-~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~ 131 (205) -+|||++.++|+.....+. +.+++.+++.+||+|+ +|.+ |+++.+......... ....+...+.++..++..++ T Consensus 3 ~sGfYvg~~~g~~~~~~~~~~~~g~~~~~~~GY~f~--~~~~--e~~y~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 77 (155) T d1p4ta_ 3 ASGFYVQADAAHAKASSSLGSAKGFSPRISAGYRIN--DLRF--AVDYTRYKNYKAPST-DFKLYSIGASAIYDFDTQSP 77 (155) T ss_dssp CEEEEEEEEEEEEEEECSSCEEEEECCEEEEEEEET--TEEE--EEEEEEEEESSCCSS-CCEEEEEEEEEEEECCCSSS T ss_pred CCCEEEEEEEEEEECCCCCCCCCCEEEEEEEEEECC--CEEE--EEEEEECCCCCCCCC-CCCEEEEEEEEEEEECCCCC T ss_conf 876089888278803167667886507999999818--9999--999997145344575-20002503899998438884 Q ss_pred EEEEEEEEEEEEEEEECCCC-CCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC----CCCEEEEEEEEEEC Q ss_conf 77898854477644431345-5567752047997346610048867999999997505655----66226999998539 Q gi|254780598|r 132 LLLYATVGPDVAQKYETGKA-GEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE----GFYNTISLGVGMKF 205 (205) Q Consensus 132 ~l~Y~~~G~a~~~~~~~~~~-~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~----~~~~~~~~G~~ykF 205 (205) +.||+++|+++++.+.+... ...+++..+|.+|+|+|| +|+|||++++||||+++++.+ .+.|.+++|+.||| T Consensus 78 ~~py~~~G~g~~~~~~~~~~~~~~~~~~~~~~~g~G~~y-~lt~n~~~~~eyry~~~~~~~~~~~~~~~~~~~Gl~Y~F 155 (155) T d1p4ta_ 78 VKPYLGARLSLNRASVDLGGSDSFSQTSIGLGVLTGVSY-AVTPNVDLDAGYRYNYIGKVNTVKNVRSGELSAGVRVKF 155 (155) T ss_dssp EEEEEEEEEEEEEEEEEETTEEEECCCEEEEEEEEEEEE-EEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEC T ss_pred EEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEC T ss_conf 528999866789845213552102676362589989999-935998999999999756876675311049999999989 No 3 >d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]} Probab=99.91 E-value=5.2e-23 Score=133.67 Aligned_cols=148 Identities=22% Similarity=0.318 Sum_probs=111.3 Q ss_pred CCCCCCCCCCCCCCC--------CCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCC---CCCCCEEEEEEE Q ss_conf 210001223333446--------677777602689985464048379984510132155566662---122321489998 Q gi|254780598|r 54 NGPYAGLSALYNGSF--------GEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNI---HSLHGIGGSLRI 122 (205) Q Consensus 54 ~G~y~g~~~g~~~~~--------~~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~---~~~~~~~~~~~~ 122 (205) ..+|+|+++|+.... ...+.++..+++++||+|+.. +++|+.+.+.+....... ........++.+ T Consensus 5 ~~wYvG~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~GY~fn~~---~~vE~~y~~~g~~~~~~~~~~~~~~~~~~~l~~ 81 (171) T d1qjpa_ 5 NTWYTGAKLGWSQYHDTGLINNNGPTHENKLGAGAFGGYQVNPY---VGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTA 81 (171) T ss_dssp TEEEEEEEEEEEC-------------CCCEEEEEEEEEEEEETT---EEEEEEEEEEEECCC-------CEEEEEEEEEE T ss_pred CCEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCC---EEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEE T ss_conf 97999999825996244433788633578706889998870775---899999974587421266655406888889999 Q ss_pred EEEEEECCCEEEEEEEEEEEEEEEECCC-CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC------CCCCCE Q ss_conf 9754312767789885447764443134-555677520479973466100488679999999975056------556622 Q gi|254780598|r 123 RGGYEVSDSLLLYATVGPDVAQKYETGK-AGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK------VEGFYN 195 (205) Q Consensus 123 r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~-~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~------~~~~~~ 195 (205) |..|++++++.+|+++|++.++.+.+.. ..+.+++..++.+|+|+|| +|+++|++|+||||.+..+ .+.+.| T Consensus 82 ~~~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~y-~i~~~~~l~~ey~~~~~~~~~~~~~~~~~~~ 160 (171) T d1qjpa_ 82 KLGYPITDDLDIYTRLGGMVWRADTYSNVYGKNHDTGVSPVFAGGVEY-AITPEIATRLEYQWTNNIGDAHTIGTRPDNG 160 (171) T ss_dssp EEEEESSSSEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEE-EEETTEEEEEEEEEEC--------------C T ss_pred EEEEECCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCCCCCCC T ss_conf 999853886069898616999988411445620468515679827999-9279979999999996258655545432244 Q ss_pred EEEEEEEEEC Q ss_conf 6999998539 Q gi|254780598|r 196 TISLGVGMKF 205 (205) Q Consensus 196 ~~~~G~~ykF 205 (205) .+++|++||| T Consensus 161 ~~~~G~~Y~F 170 (171) T d1qjpa_ 161 MLSLGVSYRF 170 (171) T ss_dssp EEEEEEEEEC T ss_pred EEEEEEEEEC T ss_conf 8999999988 No 4 >d1uynx_ f.4.5.1 (X:) Translocator domain of NalP {Neisseria meningitidis [TaxId: 487]} Probab=99.00 E-value=8.7e-09 Score=60.57 Aligned_cols=148 Identities=20% Similarity=0.133 Sum_probs=91.6 Q ss_pred CCCCCCCCCCCCCCCCC--------------CCCCCEEEEEEEEEEEC-CCEEEEEEEEEEECCCCCCC--------CCC Q ss_conf 10001223333446677--------------77760268998546404-83799845101321555666--------621 Q gi|254780598|r 55 GPYAGLSALYNGSFGEE--------------AHHNAGGSIFAGYNVED-SCIMYGVEGDVRYTVPVLAD--------NIH 111 (205) Q Consensus 55 G~y~g~~~g~~~~~~~~--------------~~~~~~~G~~~GYn~q~-~~~V~G~e~d~~~~~~~~~~--------~~~ 111 (205) +.|+-+.+++++...+. +.......+.+||+|+. +.+.+-..+.+.|...+.+. ... T Consensus 111 ~~y~~~~l~~~~~~~~~~R~~~~~~~~~g~~~~~~~~~~~e~Gy~~~~~~~~~l~P~~~l~y~~~~~d~y~E~g~~~~l~ 190 (299) T d1uynx_ 111 IGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWS 190 (299) T ss_dssp TEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESCTTCCE T ss_pred CEEEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEECCCEEEECCCCCEE T ss_conf 73578887268973225773056641035673118999999867785189669999877677788547707766753111 Q ss_pred CC----CCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECC--------------CCCCCCCCCEEEEEEEEEEEECCC Q ss_conf 22----321489998975431276778988544776444313--------------455567752047997346610048 Q gi|254780598|r 112 SL----HGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETG--------------KAGEITPIAIGGTAGVGVEVGGLS 173 (205) Q Consensus 112 ~~----~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~--------------~~~~~~~~~~g~~~G~Gvey~~it 173 (205) .. ......+..|+.+.++..+-|++++++..--.+.+. .....+..+..+.+|+|+++ .++ T Consensus 191 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~-~~~ 269 (299) T d1uynx_ 191 GNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADV-EFG 269 (299) T ss_dssp ECCEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEESSCCCCCCCC-----------------CCEEEEEEEEEEE-EEE T ss_pred ECCCCEEEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEE-EEC T ss_conf 0265326888974479986337723788999999970699820589986168750367235788842999985999-988 Q ss_pred CCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC Q ss_conf 86799999999750565566226999998539 Q gi|254780598|r 174 ESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205) Q Consensus 174 ~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205) ++|++.++|++.. + .+.+.|.+++||.||| T Consensus 270 ~~~~l~~~y~~~~-~-~~~~~~~~~~gl~y~F 299 (299) T d1uynx_ 270 NGWNGLARYSYAG-S-KQYGNHSGRVGVGYRF 299 (299) T ss_dssp TTEEEEEEEEEEE-E-TTEEEEEEEEEEEEEC T ss_pred CCEEEEEEEEEEE-C-CCCCEEEEEEEEEEEC T ss_conf 9999999999996-6-7851179999999989 No 5 >d1phoa_ f.4.3.1 (A:) Porin {Escherichia coli, different sequences [TaxId: 562]} Probab=98.04 E-value=0.00017 Score=38.48 Aligned_cols=44 Identities=14% Similarity=0.315 Sum_probs=34.9 Q ss_pred EEEEEEEEEECCCCCEEEEEEEEEEECCCCC----CCCEEEEEEEEEEC Q ss_conf 7997346610048867999999997505655----66226999998539 Q gi|254780598|r 161 GTAGVGVEVGGLSESLVARLEYRASKYSKVE----GFYNTISLGVGMKF 205 (205) Q Consensus 161 ~~~G~Gvey~~it~~~~~r~EY~y~df~~~~----~~~~~~~~G~~ykF 205 (205) -.+-+|++| .++++..+.+||++.+....+ .+.+.+.|||.|+| T Consensus 283 ~~~~vG~~Y-~lsk~~~~yaey~~~~~d~~~~~~~~~~~~~~vGlr~~F 330 (330) T d1phoa_ 283 NYIDVGATY-YFNKNMSAFVDYKINQLDSDNKLNINNDDIVAVGMTYQF 330 (330) T ss_dssp EEEEEEEEE-ESSSSEEEEEEEEEECCCSSCTTCCCCCCEEEEEEEEEC T ss_pred EEEEEEEEE-EECCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEC T ss_conf 899999999-907998999999997145766577666889999999989 No 6 >d1osma_ f.4.3.1 (A:) Porin {Klebsiella pneumoniae [TaxId: 573]} Probab=97.99 E-value=0.00022 Score=37.97 Aligned_cols=43 Identities=14% Similarity=0.312 Sum_probs=34.8 Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEECCCCC-------CCCEEEEEEEEEEC Q ss_conf 997346610048867999999997505655-------66226999998539 Q gi|254780598|r 162 TAGVGVEVGGLSESLVARLEYRASKYSKVE-------GFYNTISLGVGMKF 205 (205) Q Consensus 162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~~-------~~~~~~~~G~~ykF 205 (205) .+-+|++| .|+++..+-+||++.+..+.+ .+.+.|.|||-|+| T Consensus 293 ~~~~G~~Y-~lsKrt~~Y~~y~~~~~~~~~~~~~~~~~~~~~~~~G~r~~F 342 (342) T d1osma_ 293 YVDVGATY-YFNKNMSTYVDYKINLLDDNSFTRSAGISTDDVVALGLVYQF 342 (342) T ss_dssp EEEEEEEE-EEETTEEEEEEEEEECCCCCHHHHHHTCCCSCEEEEEEEEEC T ss_pred EEEEEEEE-EECCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEC T ss_conf 99999999-965898999999998156743234467666778999999989 No 7 >d2zfga1 f.4.3.1 (A:1-340) Porin {Escherichia coli, different sequences [TaxId: 562]} Probab=97.88 E-value=0.00035 Score=36.90 Aligned_cols=79 Identities=13% Similarity=0.215 Sum_probs=46.8 Q ss_pred EEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC----CCCEE Q ss_conf 98975431276778988544776444313455567752047997346610048867999999997505655----66226 Q gi|254780598|r 121 RIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE----GFYNT 196 (205) Q Consensus 121 ~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~----~~~~~ 196 (205) ...+.|.+.+.+.+. +++...+.+...... +....-.+.+|++| .+++++.+-+||++.+....+ .+.+. T Consensus 258 ~~~a~Y~~~~~~~~~--~~y~~~~~~~~~~~~---~~~~~~~~~vG~~Y-~lsk~~~~y~~Y~~~~~d~~~~~~~~~~~~ 331 (340) T d2zfga1 258 LLVAQYQFDFGLRPS--IAYTKSKAKDVEGIG---DVDLVNYFEVGATY-YFNKNMSTYVDYIINQIDSDNKLGVGSDDT 331 (340) T ss_dssp EEEEEECCTTSEEEE--EEEEEEEEEEETTTE---EEEEEEEEEEEEEE-EEETTEEEEEEEEEECCCTTCTTCCCCBCE T ss_pred EEEEEEEECCCEEEE--EEEEEEECCCCCCCC---CCCCEEEEEEEEEE-EECCCEEEEEEEEEECCCCCCCCCCCCCCE T ss_conf 999999726765899--999999503566777---76634899999999-946998999999998225776677767879 Q ss_pred EEEEEEEEC Q ss_conf 999998539 Q gi|254780598|r 197 ISLGVGMKF 205 (205) Q Consensus 197 ~~~G~~ykF 205 (205) +.|||-|+| T Consensus 332 ~~~G~ry~F 340 (340) T d2zfga1 332 VAVGIVYQF 340 (340) T ss_dssp EEEEEEEEC T ss_pred EEEEEEEEC T ss_conf 999999989 No 8 >d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]} Probab=97.75 E-value=0.00058 Score=35.77 Aligned_cols=49 Identities=10% Similarity=-0.034 Sum_probs=35.9 Q ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECC---------CCCCCCEEEEEEEEEEC Q ss_conf 752047997346610048867999999997505---------65566226999998539 Q gi|254780598|r 156 PIAIGGTAGVGVEVGGLSESLVARLEYRASKYS---------KVEGFYNTISLGVGMKF 205 (205) Q Consensus 156 ~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~---------~~~~~~~~~~~G~~ykF 205 (205) ..+..+++.+|+|| .++++|.+|+-|.|..=. ..+.+.+.+++|++|+| T Consensus 320 ~~~~~~~~~~G~ey-~~~~~l~lR~Gy~y~~~~~~~~~~~~~~p~~~~~~~s~G~~~~~ 377 (427) T d1t16a_ 320 GFKDAYRIALGTTY-YYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAF 377 (427) T ss_dssp CCCCEEEEEEEEEE-CCSSSEEEEEEEEEECCSSCTTTCCSSSCCCCEEEEEEEEEEES T ss_pred CCCCEEEEEEEEEE-EECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEC T ss_conf 53314899987899-83566999999997467777655464346789889998898984 No 9 >d3prna_ f.4.3.1 (A:) Porin {Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]} Probab=97.62 E-value=0.00096 Score=34.65 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=30.2 Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC Q ss_conf 99734661004886799999999750565566226999998539 Q gi|254780598|r 162 TAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205) Q Consensus 162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205) .+++|++| .|+++.++.++|.+.+-.+ ....+||.|+| T Consensus 252 ~~~lg~~Y-~ls~~~~l~a~~~~~~~~~-----~~a~~Gv~~~F 289 (289) T d3prna_ 252 AYGIGADY-QFAEGVKVSGSVQSGFANE-----TVADVGVRFDF 289 (289) T ss_dssp EEEEEEEE-EEETTEEEEEEEEECTTCC-----EEEEEEEEEEC T ss_pred EEEEEEEE-ECCCCEEEEEEEEEEECCC-----CEEEEEEEEEC T ss_conf 89999999-8499849999999980898-----25725657769 No 10 >d2fgqx1 f.4.3.1 (X:3-332) Porin {Comamonas acidovorans [TaxId: 80866]} Probab=97.60 E-value=0.001 Score=34.53 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=33.7 Q ss_pred EEEEEEEEEEECCCCCEEEEEEEEEEECCCCC-----------------CCCEEEEEEEEEEC Q ss_conf 47997346610048867999999997505655-----------------66226999998539 Q gi|254780598|r 160 GGTAGVGVEVGGLSESLVARLEYRASKYSKVE-----------------GFYNTISLGVGMKF 205 (205) Q Consensus 160 g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~-----------------~~~~~~~~G~~ykF 205 (205) .-.+.+|++| .|+++..+-+||-|.+..+.. .+...|.+||.++| T Consensus 269 ~~~~~lg~~Y-~lSKrT~lYa~~~y~~n~~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~rh~F 330 (330) T d2fgqx1 269 AHQITLGYVH-NLSKRTALYGNLAFLKNKDASTLGLQAKGVYAGGVQAGESQTGVQVGIRHAF 330 (330) T ss_dssp EEEEEEEEEE-ESSSSEEEEEEEEEEEECTTCCCCCCBTTTBCSCCCTTCEEEEEEEEEEEEC T ss_pred CEEEEEEEEE-ECCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEEC T ss_conf 2499999999-7567618744206511258774210111001578789987599999989989 No 11 >d1i78a_ f.4.4.1 (A:) Outer membrane protease OMPT {Escherichia coli [TaxId: 562]} Probab=97.48 E-value=0.0015 Score=33.62 Aligned_cols=129 Identities=12% Similarity=0.024 Sum_probs=65.7 Q ss_pred CCEEEEEEEEEEECCCEE-EEEEEEEEECCCCCCC---------CCCCCCCEEE-EEEEEEEEEECCCEEEEEEEEEE-E Q ss_conf 602689985464048379-9845101321555666---------6212232148-99989754312767789885447-7 Q gi|254780598|r 75 NAGGSIFAGYNVEDSCIM-YGVEGDVRYTVPVLAD---------NIHSLHGIGG-SLRIRGGYEVSDSLLLYATVGPD-V 142 (205) Q Consensus 75 ~~~~G~~~GYn~q~~~~V-~G~e~d~~~~~~~~~~---------~~~~~~~~~~-~~~~r~Gy~~~~~~l~Y~~~G~a-~ 142 (205) +...++++||+++.-.|- .|.-.-+........+ ...-++.|.+ -+.....|.+ +++.+-+...+. + T Consensus 125 ~y~lg~~~Gyqy~~~~wtAyGGsy~y~~~~~~r~~~g~~p~~~~~ItY~q~~~~~yiGL~g~y~~-~~~~f~~~l~ys~w 203 (297) T d1i78a_ 125 NYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDIGSFPNGERAIGYKQRFKMPYIGLTGSYRY-EDFELGGTFKYSGW 203 (297) T ss_dssp SEEEEEEEEEEEEEEEEEEECCEEEBCCTTCSSCBCCBCCTTCSEEEEEEEEEEEEEEEEEEEEE-TTEEEEEEEEEEEE T ss_pred CEEEEEEEEEEEEECCEEECCCCEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEE-CCEEEEEEEEECEE T ss_conf 75897773148752436734754783798876543465678862677776876778867789980-66599888850314 Q ss_pred EEEEEC---------CCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC---------------------- Q ss_conf 644431---------3455567752047997346610048867999999997505655---------------------- Q gi|254780598|r 143 AQKYET---------GKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE---------------------- 191 (205) Q Consensus 143 ~~~~~~---------~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~---------------------- 191 (205) .+.+.. .......+...+|.+.+.++| .|||++++-+|++|..+...+ T Consensus 204 v~a~d~D~H~lR~~~~~f~~~~~~~~~~~v~~~a~Y-~vt~~~s~~ve~~y~~~~~~~G~t~~~~~~tg~ss~~~d~ag~ 282 (297) T d1i78a_ 204 VESSDNDEHYDPKGRITYRSKVKDQNYYSVAVNAGY-YVTPNAKVYVEGAWNRVTNKKGNTSLYDHNNNTSDYSKNGAGI 282 (297) T ss_dssp EEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEEEE-EEETTEEEEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEE T ss_pred EECCCCCCCEECCCCCCCCCCCCCCCEEEEEEEEEE-EECCCEEEEEEEEEEEEEEECCCCEEEECCCCEEEECCCCCCC T ss_conf 303788422003577544303688657999998879-9789879999999999980148638996588726731575571 Q ss_pred -CCCEEEEEEEEEEC Q ss_conf -66226999998539 Q gi|254780598|r 192 -GFYNTISLGVGMKF 205 (205) Q Consensus 192 -~~~~~~~~G~~ykF 205 (205) ...-++++|+-||| T Consensus 283 ~~~~~tis~Gl~y~F 297 (297) T d1i78a_ 283 ENYNFITTAGLKYTF 297 (297) T ss_dssp EEEEEEEEEEEEEEC T ss_pred EECCEEEEEEEEEEC T ss_conf 201429998445659 No 12 >d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]} Probab=97.36 E-value=0.0022 Score=32.82 Aligned_cols=84 Identities=10% Similarity=0.016 Sum_probs=45.0 Q ss_pred EEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCC-CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC------ Q ss_conf 99989754312767789885447764443134555-67752047997346610048867999999997505655------ Q gi|254780598|r 119 SLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGE-ITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE------ 191 (205) Q Consensus 119 ~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~-~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~------ 191 (205) .++.-+.|.+++++ -.++|+.+-..-....... .......+.+.+|+.| .+++++.+.+-|+|....+++ T Consensus 326 ~~~~G~ey~~~~~l--~lR~Gy~y~~~~~~~~~~~~~~p~~~~~~~s~G~~~-~~~~~~~id~a~~y~~~~~~~~~~~~~ 402 (427) T d1t16a_ 326 RIALGTTYYYDDNW--TFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTY-AFNKDASVDVGVSYMHGQSVKINEGPY 402 (427) T ss_dssp EEEEEEEECCSSSE--EEEEEEEEECCSSCTTTCCSSSCCCCEEEEEEEEEE-ESSSSEEEEEEEEEEEECCEEEEETTE T ss_pred EEEEEEEEEECCCE--EEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEE-ECCCCEEEEEEEEEEECCCCCCCCCCC T ss_conf 99987899835669--999999974677776554643467898899988989-848986999999999747531026730 Q ss_pred -----CCCEEEEEEEEEEC Q ss_conf -----66226999998539 Q gi|254780598|r 192 -----GFYNTISLGVGMKF 205 (205) Q Consensus 192 -----~~~~~~~~G~~ykF 205 (205) .+.+.+.++++||| T Consensus 403 ~~~~~~~~~~~~~~~~y~F 421 (427) T d1t16a_ 403 QFESEGKAWLFGTNFNYAF 421 (427) T ss_dssp EEEEEEEEEEEEEEEEEEC T ss_pred EEEEEEEEEEEEEEEEEEE T ss_conf 0478878999999999995 No 13 >d2pora_ f.4.3.1 (A:) Porin {Rhodobacter capsulatus [TaxId: 1061]} Probab=97.15 E-value=0.0038 Score=31.58 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=34.0 Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC Q ss_conf 99734661004886799999999750565566226999998539 Q gi|254780598|r 162 TAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205) Q Consensus 162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205) .+++|++| .|++++.+.++|.+.+..+ +.+.+.+||.|+| T Consensus 262 ~~~lG~~Y-~Lsk~t~ly~~y~~~~~d~---~~~~~~~G~~~~F 301 (301) T d2pora_ 262 YYGLGASY-DLGGGASIVGGIADNDLPN---SDMVADLGVKFKF 301 (301) T ss_dssp EEEEEEEE-EEETTEEEEEEEEEECSSS---CCCEEEEEEEEEC T ss_pred EEEEEEEE-ECCCCEEEEEEEEEEECCC---CCEEEEEEEEEEC T ss_conf 99999999-7899979999999983589---8737999649989 No 14 >d2vdfa1 f.4.4.2 (A:7-253) Outer membrane adhesin/invasin OpcA {Neisseria meningitidis [TaxId: 487]} Probab=86.77 E-value=0.6 Score=20.29 Aligned_cols=51 Identities=25% Similarity=0.369 Sum_probs=31.3 Q ss_pred CCCCEEEEEEEEEEE-ECCCCCEEEEEE--EEEEECCCCC-----------------CCCEEEEEEEEEEC Q ss_conf 775204799734661-004886799999--9997505655-----------------66226999998539 Q gi|254780598|r 155 TPIAIGGTAGVGVEV-GGLSESLVARLE--YRASKYSKVE-----------------GFYNTISLGVGMKF 205 (205) Q Consensus 155 ~~~~~g~~~G~Gvey-~~it~~~~~r~E--Y~y~df~~~~-----------------~~~~~~~~G~~ykF 205 (205) +...-||.+|+|+.. .++++.+.+-.| |||-...+.+ ...+.+-+.++++| T Consensus 177 n~k~kG~G~glg~~i~KqL~d~~~l~fgPfyRyW~Ik~S~~~~~~~~~g~~~~~EPkNkt~EyGlrvsv~F 247 (247) T d2vdfa1 177 NQKTNGWGFGLGANIGKKLGESASIEAGPFYKQRTYKESGEFSVTTKSGDVSLTIPKTSIREYGLRVGIKF 247 (247) T ss_dssp EEECCEEEEEEEEEEEEECC--CEEEEEEEEEEEEECCCCCBCC-------CBCCCCEEEEEEEEEEEEEC T ss_pred HHHCCCEEEEEEEEHHHHCCCCCCEEECCEEEEEEECCCCCEEEEECCCCEEEECCCCCCCEEEEEEEEEC T ss_conf 33216711786336333105543055423046543236756478505873468647875422326788629 No 15 >d2mpra_ f.4.3.2 (A:) Maltoporin (also LamB protein) {Salmonella typhimurium [TaxId: 90371]} Probab=36.95 E-value=8.9 Score=14.28 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=39.6 Q ss_pred CEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEE Q ss_conf 21489998975431276778988544776444313455567752047997346610048867999999 Q gi|254780598|r 115 GIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEY 182 (205) Q Consensus 115 ~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY 182 (205) .| .++.+|+-|.+++.+.+-.-+||...+.+......+.-+.-..+++-+|-.+ .--|.+-+-+-| T Consensus 314 ~w-~s~~~Rp~y~~~~~~~~~~E~gy~~~~~~~~g~~~~~~K~TiApt~~~g~~f-~sRPelR~faTy 379 (427) T d2mpra_ 314 EW-WTVGVRPMYKWTPIMSTLLEVGYDNVKSQQTGDRNNQYKITLAQQWQAGDSI-WSRPAIRIFATY 379 (427) T ss_dssp EE-EEEEEEEEEEEETTEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEESSSST-TCCSEEEEEEEE T ss_pred EE-EEEEEEEEEEECCHHEEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCC-CCCCEEEEEEEE T ss_conf 79-9998778555200110555745653125787765750689998602007987-778579999999 No 16 >d1a0tp_ f.4.3.2 (P:) Sucrose-specific porin {Enterobacterium (Salmonella typhimurium) [TaxId: 90371]} Probab=20.26 E-value=18 Score=12.64 Aligned_cols=113 Identities=13% Similarity=-0.030 Sum_probs=59.4 Q ss_pred EEEC-CCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCC------ Q ss_conf 6404-837998451013215556666212232148999897543127677898854477644431345556775------ Q gi|254780598|r 85 NVED-SCIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPI------ 157 (205) Q Consensus 85 n~q~-~~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~------ 157 (205) .+++ ++|-++..+-+.+........ .+..| .++.+|+-|.+++.+-+-..+||...+.+..+........ T Consensus 274 ~~~~~~~~~~~~~~~y~~~~d~~~~~--~~~~~-~s~gvRP~y~~~~~~~~~~E~gy~~~~~~~~g~~~~~~~~~~~~K~ 350 (413) T d1a0tp_ 274 TTPLSENWSVAPAMLAQRSKDRYADG--DSYQW-ATFNLRLIQAINQNFALAYEGSYQYMDLKPEGYNDRQAVNGSFYKL 350 (413) T ss_dssp EEESSSSEEEEEEEEEEEEESSSSTT--CEEEE-EEEEEEEEEESSSSEEEEEEEEEEEEEEECTTGGGCCCEEEEEEEE T ss_pred CEECCCCEEEEEEEEEEEECCCCCCC--CCCEE-EEEEEEEEEEECCCEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEE T ss_conf 44135876776668999851667789--97079-9999888589668689999988866403446753666667835899 Q ss_pred CEEEEEEEEE--EEECCCCCEEEEEEEEEEECCCC--------------CCCCEEEEEEEEE Q ss_conf 2047997346--61004886799999999750565--------------5662269999985 Q gi|254780598|r 158 AIGGTAGVGV--EVGGLSESLVARLEYRASKYSKV--------------EGFYNTISLGVGM 203 (205) Q Consensus 158 ~~g~~~G~Gv--ey~~it~~~~~r~EY~y~df~~~--------------~~~~~~~~~G~~y 203 (205) -...++-+|- ++ -.+=.+|+=+.|.+..+. ....+.+.+|+-. T Consensus 351 TlA~~~~~g~~~~f---wsRPeiR~faTY~~w~~~~~~~~~~~~~~~~~~~~~~~~~fGvQ~ 409 (413) T d1a0tp_ 351 TFAPTFKVGSIGDF---FSRPEIRFYTSWMDWSKKLNNYASDDALGSDGFNSGGEWSFGVQM 409 (413) T ss_dssp EEEEEEESSCTTCT---TCCCEEEEEEEEEEECGGGGGSCSSSSTTBTTBCSSCEEEEEEEE T ss_pred EEEEEECCCCCCCC---CCCCEEEEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCEEEEEEE T ss_conf 99763132897876---779789999999805412200224565454677888878999999 Done!