Query gi|254780600|ref|YP_003065013.1| CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 200 No_of_seqs 133 out of 2596 Neff 7.7 Searched_HMMs 23785 Date Tue May 31 20:10:49 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780600.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3ix6_A TS, tsase, thymidylate 6.7 85 0.0036 11.1 0.0 39 59-97 30-68 (360) 2 2ntk_A IMP cyclohydrolase; alp 4.9 1.3E+02 0.0054 10.1 1.0 15 72-86 93-107 (222) 3 2bnl_A Modulator protein RSBR; 4.7 1.3E+02 0.0056 10.0 2.7 41 55-96 47-87 (136) 4 3bz1_K PSII-K, photosystem II 4.4 1.4E+02 0.006 9.8 1.7 19 74-92 7-25 (37) 5 3cx5_D Cytochrome C1, heme pro 3.7 1.8E+02 0.0074 9.3 3.4 26 171-196 210-237 (248) 6 1f6g_A Voltage-gated potassium 3.3 2E+02 0.0085 9.0 9.2 120 58-200 5-124 (160) 7 3opy_I 6-phosphofructo-1-kinas 3.3 2E+02 0.0085 9.0 1.7 14 64-77 12-25 (351) 8 3m73_A Tellurite resistance pr 3.1 2.2E+02 0.0091 8.8 7.9 69 126-199 5-73 (314) 9 2qjy_B Cytochrome C1; cytochro 3.0 2.3E+02 0.0097 8.7 3.7 28 171-198 231-260 (269) 10 1ry9_A SPA15 protein, surface 2.9 2.4E+02 0.01 8.5 0.9 20 53-72 126-145 (145) No 1 >3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious disease, brucellosis, orchitis, epididymitis; 2.20A {Brucella melitensis} Probab=6.66 E-value=85 Score=11.13 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=31.5 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 499999718712568889989988765546789886433 Q gi|254780600|r 59 DGYLARVWNQTSNIGRMLDPIADKLLISSVLLLMTADGT 97 (200) Q Consensus 59 DG~iAR~~n~~S~~G~~lDp~aDki~~~~~~~~l~~~~~ 97 (200) ++.+-+|.+..+++.+++|..|+|.-+...-+-+.+.|. T Consensus 30 ~~~v~fki~~~~~L~klm~ay~~~~~~~~~~~rF~fdG~ 68 (360) T 3ix6_A 30 SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68 (360) T ss_dssp --------------------------------------- T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCE T ss_conf 948999971586699999999875389855179998997 No 2 >2ntk_A IMP cyclohydrolase; alpha-beta-BETA-alpha NTN hydrolase fold; HET: IMP; 2.03A {Methanothermobacterthermautotrophicus} SCOP: d.153.2.1 PDB: 2ntl_A* 2ntm_A 1kuu_A Probab=4.86 E-value=1.3e+02 Score=10.10 Aligned_cols=15 Identities=40% Similarity=0.532 Sum_probs=11.8 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 688899899887655 Q gi|254780600|r 72 IGRMLDPIADKLLIS 86 (200) Q Consensus 72 ~G~~lDp~aDki~~~ 86 (200) =|..-||+|||+-.. T Consensus 93 NG~hTD~I~~kl~~G 107 (222) T 2ntk_A 93 NGSHTDTIADKVALG 107 (222) T ss_dssp SSTHHHHHHHHHHTS T ss_pred CCCCCHHHHHHHHCC T ss_conf 797417899998849 No 3 >2bnl_A Modulator protein RSBR; stress-response, stress response, phosphorylation; 2.0A {Bacillus subtilis} Probab=4.70 E-value=1.3e+02 Score=10.03 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=29.0 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 986649999971871256888998998876554678988643 Q gi|254780600|r 55 TDFFDGYLARVWNQTSNIGRMLDPIADKLLISSVLLLMTADG 96 (200) Q Consensus 55 tD~lDG~iAR~~n~~S~~G~~lDp~aDki~~~~~~~~l~~~~ 96 (200) .|++|=-++.-.|..+. -+-||..|+|+...+-=+.+.-.| T Consensus 47 ~Efv~li~~~i~~~~~~-~e~L~~Faer~VqlGwPL~~~T~G 87 (136) T 2bnl_A 47 KEYIDILLLSVKDENAA-ESQISELALRAVQIGLSMKFLATA 87 (136) T ss_dssp HHHHHHHHTCSSCTTTT-HHHHHHHHHHHHHTTCCHHHHHHH T ss_pred HHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 99999999983275238-988999999999808849999988 No 4 >3bz1_K PSII-K, photosystem II reaction center protein K; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1izl_K* 1s5l_K* 2axt_K* 3bz2_K* 3kzi_K* 3a0b_K* 3a0h_K* Probab=4.41 E-value=1.4e+02 Score=9.85 Aligned_cols=19 Identities=37% Similarity=0.670 Sum_probs=11.1 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 8899899887655467898 Q gi|254780600|r 74 RMLDPIADKLLISSVLLLM 92 (200) Q Consensus 74 ~~lDp~aDki~~~~~~~~l 92 (200) +.+||+.|-.=++..+..+ T Consensus 7 a~f~PivdvlPiIP~~F~l 25 (37) T 3bz1_K 7 AIFDPLVDVLPVIPVLFLA 25 (37) T ss_dssp GGGHHHHTTGGGHHHHHHH T ss_pred HHHHHHHHHHCCHHHHHHH T ss_conf 5431088872109999999 No 5 >3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D* Probab=3.70 E-value=1.8e+02 Score=9.31 Aligned_cols=26 Identities=12% Similarity=0.082 Sum_probs=16.1 Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHCCHH Q ss_conf 9999999999999999--9999951015 Q gi|254780600|r 171 LWISALLTIYSGYDYF--RVGIKHIDSE 196 (200) Q Consensus 171 ~~ia~~lti~Sg~~Y~--~~~~~~~~~~ 196 (200) .|+...+.+.+.+.|. +++||.+|.+ T Consensus 210 ~~Vl~FL~i~~vl~yllkk~~WkdvK~~ 237 (248) T 3cx5_D 210 LKTVIILSSLYLLSIWVKKFKWAGIKTR 237 (248) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999999999999999999985652355 No 6 >1f6g_A Voltage-gated potassium channel; integral membrane protein, cytoplasmic domains, proton transport, membrane protein; NMR {Streptomyces lividans} SCOP: f.14.1.1 Probab=3.33 E-value=2e+02 Score=8.99 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=0.0 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf 64999997187125688899899887655467898864331047411234542345543345678852066663025688 Q gi|254780600|r 58 FDGYLARVWNQTSNIGRMLDPIADKLLISSVLLLMTADGTINRYSIWAAITILCREILVSGLREYLAELKVSVPVTRIAR 137 (200) Q Consensus 58 lDG~iAR~~n~~S~~G~~lDp~aDki~~~~~~~~l~~~~~~~~~~~w~~ilii~Rei~i~~lr~~~~~~~~~i~~~~~GK 137 (200) +||.++|..+.- .++.-++..=+......++.+.. +.+++...+..+++ .+++.... T Consensus 5 ~~~~l~R~~k~l--~~r~~~~l~~~~~~~~~~l~~~~-------------------~~~~s~~~~~~e~~--~~~~~~~s 61 (160) T 1f6g_A 5 LSGLLARLVKLL--LGRHGSALHWAAAGAATVLLVIV-------------------LLAGSYLAVLAERG--APGAQLIT 61 (160) T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHCC--CCCCCCCC T ss_conf 506999999999--98425688999999999999999-------------------99999999998617--88655584 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC Q ss_conf 999999999999996420011103899999999999999999999999999999510154159 Q gi|254780600|r 138 FKTGIQMISIGFLLAGPACENQTSYITGTGIILLWISALLTIYSGYDYFRVGIKHIDSEDKQE 200 (200) Q Consensus 138 ~kT~~q~~~i~~~L~~~~~~~~~~~~~~~~~~~~~ia~~lti~Sg~~Y~~~~~~~~~~~~~~~ 200 (200) +.+++.+..+...-.+...............++..+..+..+.-.+..+.........+.+++ T Consensus 62 ~~~aly~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 124 (160) T 1f6g_A 62 YPAALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQERRGH 124 (160) T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999789875325754788885798859999999999999999999999999999999999999 No 7 >3opy_I 6-phosphofructo-1-kinase gamma-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Probab=3.31 E-value=2e+02 Score=8.98 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=0.0 Q ss_pred HHCCCCHHHHHHHH Q ss_conf 97187125688899 Q gi|254780600|r 64 RVWNQTSNIGRMLD 77 (200) Q Consensus 64 R~~n~~S~~G~~lD 77 (200) ||-|..-+||++|| T Consensus 12 ~~en~gpefgefl~ 25 (351) T 3opy_I 12 ERENVGPEFGEFLN 25 (351) T ss_dssp HHTTCCHHHHHHHH T ss_pred HHHCCCCCHHHHHH T ss_conf 76146830888999 No 8 >3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A* Probab=3.14 E-value=2.2e+02 Score=8.81 Aligned_cols=69 Identities=12% Similarity=-0.093 Sum_probs=0.0 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHC Q ss_conf 06666302568899999999999999642001110389999999999999999999999999999951015415 Q gi|254780600|r 126 LKVSVPVTRIARFKTGIQMISIGFLLAGPACENQTSYITGTGIILLWISALLTIYSGYDYFRVGIKHIDSEDKQ 199 (200) Q Consensus 126 ~~~~i~~~~~GK~kT~~q~~~i~~~L~~~~~~~~~~~~~~~~~~~~~ia~~lti~Sg~~Y~~~~~~~~~~~~~~ 199 (200) ++.++|+++.|= -|..-+..+...............+.++..++.++.+.-..-|..|..++-++-.++ T Consensus 5 ~~~plP~~~F~~-----~Mgtg~la~~~~~~~~~~~~~~~i~~i~~~l~~~l~~~l~~~~~~r~~~~p~~~~~e 73 (314) T 3m73_A 5 KPFPLPTGYFGI-----PLGLAALSLAWFHLENLFPAARMVSDVLGIVASAVWILFILMYAYKLRYYFEEVRAE 73 (314) T ss_dssp CCCSSCGGGGHH-----HHHHHHHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH T ss_pred CCCCCCHHHHHH-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 888987899999-----999999999999878635526899999999999999999999999998359999999 No 9 >2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix rieske; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B* Probab=2.98 E-value=2.3e+02 Score=8.66 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHCCHHHH Q ss_conf 9999999999999999--999995101541 Q gi|254780600|r 171 LWISALLTIYSGYDYF--RVGIKHIDSEDK 198 (200) Q Consensus 171 ~~ia~~lti~Sg~~Y~--~~~~~~~~~~~~ 198 (200) .|+...+.+.+++.|. ++.||.+|.+.+ T Consensus 231 ~~VllfL~vl~~l~y~lkr~~WkdIK~~~~ 260 (269) T 2qjy_B 231 FTAVMFLTVLSVLLYLTNKRLWAGVKGKKK 260 (269) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC---- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCE T ss_conf 999999999999999999998576022400 No 10 >1ry9_A SPA15 protein, surface presentation of antigens protein SPAK; alpha/beta fold, chaperone; 1.82A {Shigella flexneri} SCOP: d.198.1.1 Probab=2.86 E-value=2.4e+02 Score=8.53 Aligned_cols=20 Identities=5% Similarity=0.167 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHCCCCHHH Q ss_conf 99986649999971871256 Q gi|254780600|r 53 SITDFFDGYLARVWNQTSNI 72 (200) Q Consensus 53 ~~tD~lDG~iAR~~n~~S~~ 72 (200) +++|.+|||..|..+-.+.+ T Consensus 126 ~Fa~aLe~Ff~~l~~~~~vL 145 (145) T 1ry9_A 126 VFAEILHEFYQRMEILNGVL 145 (145) T ss_dssp HHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999987439 Done!