RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780600|ref|YP_003065013.1|
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
         (200 letters)



>d1jboa_ a.1.1.3 (A:) Phycocyanin alpha subunit {Synechococcus
           elongatus [TaxId: 32046]}
          Length = 162

 Score = 24.4 bits (53), Expect = 7.5
 Identities = 10/36 (27%), Positives = 15/36 (41%)

Query: 101 YSIWAAITILCREILVSGLREYLAELKVSVPVTRIA 136
           Y + A  T    E L++GL E  +   +S      A
Sbjct: 97  YCLVAGGTGPMDEYLIAGLSEINSTFDLSPSWYIEA 132


>d1shyb1 b.69.12.1 (B:40-515) Hepatocyte growth factor receptor
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 476

 Score = 24.4 bits (52), Expect = 7.9
 Identities = 8/35 (22%), Positives = 14/35 (40%)

Query: 37  SPNLMRWIALSLFTIASITDFFDGYLARVWNQTSN 71
           S   M   A+  F I  + DFF+  + +   +   
Sbjct: 314 SAEPMDRSAMCAFPIKYVNDFFNKIVNKNNVRCLQ 348


>d1b8da_ a.1.1.3 (A:) Phycoerythrin alpha subunit {Red alga
           (Griffithsia monilis) [TaxId: 42003]}
          Length = 164

 Score = 24.1 bits (52), Expect = 8.3
 Identities = 9/36 (25%), Positives = 13/36 (36%)

Query: 101 YSIWAAITILCREILVSGLREYLAELKVSVPVTRIA 136
           YS+    T    E  ++G RE    L +       A
Sbjct: 95  YSLVVGGTGPVDEWGIAGSREVYRALNLPGSAYIAA 130


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.141    0.423 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 758,530
Number of extensions: 33376
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 7
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.7 bits)