BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780600|ref|YP_003065013.1| CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase [Candidatus Liberibacter asiaticus str. psy62] (200 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780600|ref|YP_003065013.1| CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 200 Score = 405 bits (1040), Expect = e-115, Method: Compositional matrix adjust. Identities = 200/200 (100%), Positives = 200/200 (100%) Query: 1 MASRSYNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDG 60 MASRSYNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDG Sbjct: 1 MASRSYNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDG 60 Query: 61 YLARVWNQTSNIGRMLDPIADKLLISSVLLLMTADGTINRYSIWAAITILCREILVSGLR 120 YLARVWNQTSNIGRMLDPIADKLLISSVLLLMTADGTINRYSIWAAITILCREILVSGLR Sbjct: 61 YLARVWNQTSNIGRMLDPIADKLLISSVLLLMTADGTINRYSIWAAITILCREILVSGLR 120 Query: 121 EYLAELKVSVPVTRIARFKTGIQMISIGFLLAGPACENQTSYITGTGIILLWISALLTIY 180 EYLAELKVSVPVTRIARFKTGIQMISIGFLLAGPACENQTSYITGTGIILLWISALLTIY Sbjct: 121 EYLAELKVSVPVTRIARFKTGIQMISIGFLLAGPACENQTSYITGTGIILLWISALLTIY 180 Query: 181 SGYDYFRVGIKHIDSEDKQE 200 SGYDYFRVGIKHIDSEDKQE Sbjct: 181 SGYDYFRVGIKHIDSEDKQE 200 >gi|254780578|ref|YP_003064991.1| phosphatidylserine synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 298 Score = 31.2 bits (69), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%) Query: 9 PNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARVWNQ 68 PN++T ++ +C IGS N A+ + +A+ D DG +AR Sbjct: 58 PNLVT--------ILAICAGFSGIGSAIEGNYE--TAVCMVLVAAFLDGIDGRIARFMEA 107 Query: 69 TSNIGRMLDPIAD 81 TS G LD +AD Sbjct: 108 TSKFGAQLDSLAD 120 >gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 474 Score = 25.8 bits (55), Expect = 0.50, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 20/36 (55%) Query: 30 QEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARV 65 +EI F+SP L++ I L A D FD ++++ Sbjct: 399 KEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKI 434 >gi|254780703|ref|YP_003065116.1| putative phosphate transport system protein [Candidatus Liberibacter asiaticus str. psy62] Length = 229 Score = 24.6 bits (52), Expect = 1.1, Method: Compositional matrix adjust. Identities = 12/32 (37%), Positives = 19/32 (59%) Query: 105 AAITILCREILVSGLREYLAELKVSVPVTRIA 136 A ITI R+ + S LRE + +K++ + RI Sbjct: 67 AIITIAKRQPMASDLREIVGSIKIAADLERIG 98 >gi|254781033|ref|YP_003065446.1| HemY domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] Length = 492 Score = 24.6 bits (52), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Query: 29 IQEIGSFTSPNLMRWIALSLFTIAS---ITDFFDGYLARVWNQTSNIGRML 76 I++ S + ++ W +L + I+D DGYL+ VW S I + L Sbjct: 367 IEQANSHNTDKILYWTQSALHAMPDPLWISD--DGYLSSVWLPLSPISKTL 415 >gi|254781049|ref|YP_003065462.1| succinyl-CoA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 398 Score = 24.3 bits (51), Expect = 1.8, Method: Compositional matrix adjust. Identities = 12/53 (22%), Positives = 31/53 (58%) Query: 80 ADKLLISSVLLLMTADGTINRYSIWAAITILCREILVSGLREYLAELKVSVPV 132 AD+ +++ ++T+D ++ I I+ ++LV G+ + E+K+++P+ Sbjct: 303 ADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPL 355 >gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Length = 263 Score = 23.9 bits (50), Expect = 1.9, Method: Compositional matrix adjust. Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 6/39 (15%) Query: 32 IGSFTSPNLMRWIALSLFTIASITDFFDGYLARVWNQTS 70 +G +PN++ W+A + FDG++ V + Sbjct: 57 VGMVVTPNILEWVAFPEENV------FDGFIDDVHQPNA 89 >gi|255764485|ref|YP_003065139.2| hypothetical protein CLIBASIA_03065 [Candidatus Liberibacter asiaticus str. psy62] Length = 243 Score = 23.5 bits (49), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 7/71 (9%) Query: 86 SSVLLLMTADGTINRYSIWAAITILCREILVSGL-------REYLAELKVSVPVTRIARF 138 +SVL L+ T++ SI A+ + + I+ SG+ R Y A+ + V R++ F Sbjct: 114 ASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYF 173 Query: 139 KTGIQMISIGF 149 + GF Sbjct: 174 ASKPSAGKCGF 184 >gi|254780577|ref|YP_003064990.1| phosphatidylserine decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 232 Score = 22.7 bits (47), Expect = 4.4, Method: Compositional matrix adjust. Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%) Query: 170 LLWISALLTIYSGYDYFR 187 LLW A+LT++ Y +FR Sbjct: 39 LLWFGAILTVWCAY-FFR 55 >gi|254780430|ref|YP_003064843.1| nitrogen fixation protein [Candidatus Liberibacter asiaticus str. psy62] Length = 189 Score = 22.3 bits (46), Expect = 6.5, Method: Compositional matrix adjust. Identities = 9/27 (33%), Positives = 14/27 (51%) Query: 170 LLWISALLTIYSGYDYFRVGIKHIDSE 196 + I + ++Y GYD+ VG D E Sbjct: 45 IFSIPGIASVYFGYDFITVGKDQYDWE 71 >gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 21.9 bits (45), Expect = 7.0, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 13/86 (15%) Query: 78 PIADKLLISSVLLLMTADGTINRYSIWAAITILCREILVSGLRE-YLAEL-----KVSVP 131 P A + ++++ +MT ++ +T+ R + + GL+E LA L KV +P Sbjct: 694 PSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVLIP 753 Query: 132 VTRIARF-------KTGIQMISIGFL 150 I K G+++I + F+ Sbjct: 754 EENIKDLMDIPENVKNGLEIIPVSFM 779 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.327 0.141 0.423 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 124,761 Number of Sequences: 1233 Number of extensions: 4414 Number of successful extensions: 20 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 12 length of query: 200 length of database: 328,796 effective HSP length: 70 effective length of query: 130 effective length of database: 242,486 effective search space: 31523180 effective search space used: 31523180 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 36 (18.5 bits)