HHsearch alignment for GI: 254780601 and conserved domain: CHL00122
>CHL00122 secA preprotein translocase subunit SecA; Validated.
Probab=99.69 E-value=2.7e-13 Score=108.57 Aligned_cols=279 Identities=20% Similarity=0.215 Sum_probs=168.6
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
T Consensus 72 ~lg~-r~~dvQl~gg~~Lh~G~--iaEM~TGEGKTL~atlp~ylnal~G---------kgvhvvTvNdYLA~RDae~m~~ 139 (891)
T CHL00122 72 VLGL-RHFDVQLIGGLVLNDGK--IAEMKTGEGKTLVATLPAYLNALTG---------KGVHIVTVNDYLARRDSEWMGQ 139 (891)
T ss_pred HCCC-CCCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHCC---------CCEEEEECCHHHHHHHHHHHHH
T ss_conf 6489-76469999899984595--2465068857999999999997559---------9729980645656866999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-HHHHHC------CCCCCCCCEEEEEECCCCCC-CC-----
Q ss_conf 854469879999889987999996128975998223101-332100------01224643189996131100-10-----
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-CDHIRG------KGLNISHLKAVVLDEADEML-DL----- 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-~d~~~~------~~l~l~~v~~lVlDEaD~ml-~~----- 163 (573)
T Consensus 140 vy~~lGlsvg~i~~~~~~~er~~a--Y~~DItY~Tn~e~gFDyLRDnm~~~~~~~vqr~~~~aIvDEvDSiLIDEArtPL 217 (891)
T CHL00122 140 IYRFLGLSVGLIQEDMSIEERKQN--YKADITYVTNSELGFDYLRDNMALSLSEVVQRPFNYCIIDEVDSILIDEARTPL 217 (891)
T ss_pred HHHHHCCEEEEECCCCCHHHHHHH--HCCCCEEECCCCEECCCCCCCCCCCHHHHHCCCCCEEEEECHHHHHHHCCCCCE
T ss_conf 999829667020899997999998--358927978876222566633236878840889973788640455432256885
Q ss_pred ---HH-------HHHHHHHHHHCCC---------CCCEEE-----------------EECCCCCCCHHH-----HHH-HC
Q ss_conf ---01-------2357888752143---------342256-----------------311112220011-----112-10
Q gi|254780601|r 164 ---GF-------RDDIEFILDSSPK---------KRRMLM-----------------FSATISPAITTL-----AKN-YQ 201 (573)
Q Consensus 164 ---gf-------~~~i~~i~~~~p~---------~~q~~l-----------------~SAT~~~~i~~l-----~~~-~~ 201 (573)
T Consensus 218 iIsg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~v~lte~G~~~~e~~l~~~~ly~~~-~~~~~~i~~al~A~~lf~ 296 (891)
T CHL00122 218 IISGPVETPIDKYIVAAEIANYLEKDVHYEVDEKNRNIILTDQGILQCEKILKIKDLYDPE-DPWIPYILNAIKAKELFI 296 (891)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCCEEECHHHCCCCCCHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHHHH
T ss_conf 8627987744789999999864377666786223157850632699998613753447854-339999999999998760
Q ss_pred CCCCC------------------------------------CCCCCCCCCCCCCCHH-CC--------------------
Q ss_conf 12333------------------------------------3233323256652000-00--------------------
Q gi|254780601|r 202 KDAVR------------------------------------VNIASENRQHSDIDYR-AV-------------------- 224 (573)
Q Consensus 202 ~~p~~------------------------------------i~~~~~~~~~~~i~~~-~~-------------------- 224 (573)
T Consensus 297 ~d~dYiV~d~~v~ivDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~A~IT~Qn~Fr~y~klsGMTGTA~te~~Ef 376 (891)
T CHL00122 297 KNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENVPIQQETQTLASITYQNFFLLYPKLSGMTGTAKTEEVEL 376 (891)
T ss_pred CCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHCCHHCCCCCCCHHHHHHH
T ss_conf 69748998898999867888878999356477999998718877888721366659999854504226756768789999
Q ss_pred --------------------------CCCCCHHHHHHHHCC-CCC-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf --------------------------000000245542001-023-5641677513023345655555422666301048
Q gi|254780601|r 225 --------------------------LVALSDRDNAIVNIL-RYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 (573)
Q Consensus 225 --------------------------~v~~~~k~~~l~~ll-~~~-~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg 276 (573)
T Consensus 377 ~~iY~l~Vv~IPtn~p~~R~D~~d~vy~t~~~K~~Av~~ei~~~h~~GqPVLvGT~SVe~SE~ls~~L~~~gi~h~vLNA 456 (891)
T CHL00122 377 EKIYNLEVICIPTHRPMQRKDLPDLVYKTEYSKWKAIADECFDMHKIGRPILVGTTSVEKSELLSQLLEEYQLPHNLLNA 456 (891)
T ss_pred HHHHCCCEEECCCCCCCEEEECCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHCC
T ss_conf 99858847988999985003088957788999999999999999967999898346558899999999974786220238
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf 9999999999866544881499853865001457
Q gi|254780601|r 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 (573)
Q Consensus 277 ~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi 310 (573)
T Consensus 457 k~~n~~~EA~IiA~AG~~gaVTIATNMAGRGTDI 490 (891)
T CHL00122 457 KPENVKRESEIIAQAGRKGAITIATNMAGRGTDI 490 (891)
T ss_pred CCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCE
T ss_conf 8430789999999569999389715556898784