HHsearch alignment for GI: 254780601 and conserved domain: COG0513
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=788.40 Aligned_cols=468 Identities=33% Similarity=0.449 Sum_probs=384.5
Q ss_pred CCCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf 7779--98899999997879878989999999997599699992898746899999999986104212255688279998
Q gi|254780601|r 3 IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAI 80 (573)
Q Consensus 3 ~f~~--l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil 80 (573)
T Consensus 30 ~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~iP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~i~~~~~----~~~~~aLil 105 (513)
T COG0513 30 EFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE----RKYVSALIL 105 (513)
T ss_pred CHHHCCCCHHHHHHHHHCCCCCCCHHHHHHCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCC----CCCCCEEEE
T ss_conf 9766599999999999659899898999658776369997998689871789999999999740045----577756997
Q ss_pred CCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 499899999999999985446-9879999889987999996128975998223101332100012246431899961311
Q gi|254780601|r 81 APTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159 (573)
Q Consensus 81 ~PTrELa~Qv~~~~~~l~~~~-~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ 159 (573)
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~g~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCEEEEEECCHHH
T ss_conf 79999999999999999862458429999899898999998724998999796089999864885546501899676176
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCC--CCCCCCHHCCCCCCCH-HHHHHH
Q ss_conf 0010012357888752143342256311112220011112101233332333232--5665200000000000-245542
Q gi|254780601|r 160 MLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSD-RDNAIV 236 (573)
Q Consensus 160 ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~--~~~~i~~~~~~v~~~~-k~~~l~ 236 (573)
T Consensus 186 mld~gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred HCCCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEECCHHHHHHHHH
T ss_conf 63887689999999738977489999824898999999997368807996432233530047079998085677999999
Q ss_pred HCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 00102356416775130233456555554226663010489999999999866544881499853865001457887338
Q gi|254780601|r 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 (573)
Q Consensus 237 ~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~V 316 (573)
T Consensus 266 ~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~iLVaTDvaaRGiDi~~v~~V 345 (513)
T COG0513 266 KLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHV 345 (513)
T ss_pred HHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCEE
T ss_conf 99827888839999576776999999999789659997388998899999999975998989980654468996667479
Q ss_pred EEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHH-HHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHHCC-
Q ss_conf 97058874789998603010378886025640599-99999999998506641-0568999998888998655443101-
Q gi|254780601|r 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAERLFREANVSVV-WEPAPSVEAIRERDAQRILQDPLFL- 393 (573)
Q Consensus 317 in~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~-e~~~~~~i~~~~~~~~~-~~~~Ps~eeI~~~~~~~l~~~~~~~- 393 (573)
T Consensus 346 inyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (513)
T COG0513 346 INYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEPEDAKLLKTTRPGLEEES 425 (513)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf 97879998041317345343489987279985562349999999998753244323477432034555554300012220
Q ss_pred -C-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf -2-----2204557766666542004789999999862011112223422111121123332222222334566778804
Q gi|254780601|r 394 -D-----SIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467 (573)
Q Consensus 394 -~-----~~~~~~~~~~e~Ll~~~dpe~IAaALlkl~~~~~~~~e~~~~~~~~~~r~r~r~~~R~~r~~~~~R~~~~g~~ 467 (573)
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~--------~~----~~~~~~---- 480 (513)
T COG0513 426 DISDEIKKLKSSKKALLRGLGVRFTLSKLLANLGKEIPGAGDAVT-I--------D--------PE----LERRSP---- 480 (513)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC-C--------C--------CC----CCCCCC----
T ss_conf 001222122455544320012222055655555443114455321-2--------3--------10----003565----
Q ss_pred EEEEECHHHCCCCHHHHHHHHHHCCCCCHHHEEEEEEC
Q ss_conf 99996702279868899997750028998883003641
Q gi|254780601|r 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQ 505 (573)
Q Consensus 468 r~~InvGr~d~v~p~~ivgai~~~~~i~~~~IG~I~i~ 505 (573)
T Consensus 481 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (513)
T COG0513 481 ------NSADDIEYILKGLSYRAEERTAKNEAANIKLQ 512 (513)
T ss_pred ------CCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
T ss_conf ------65323332001210000256652345544568