HHsearch alignment for GI: 254780601 and conserved domain: COG0514
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair].
Probab=100.00 E-value=2.6e-41 Score=296.98 Aligned_cols=333 Identities=25% Similarity=0.350 Sum_probs=257.4
Q ss_pred HHHHHHH-HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 9999999-787987898999999999759969999289874689999999998610421225568827999849989999
Q gi|254780601|r 10 VIGEALS-ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAV 88 (573)
Q Consensus 10 ~l~~~l~-~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~ 88 (573)
T Consensus 4 ~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--~---------G-~TLVVSPLiSLM~ 71 (590)
T COG0514 4 EAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--E---------G-LTLVVSPLISLMK 71 (590)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHC--C---------C-CEEEECCHHHHHH
T ss_conf 78999999709130388889999999658867998538987106743678865--9---------9-7899785688899
Q ss_pred -HHHHHHHHHHHHCCCEEEEEECCCCHHHHH---HHHCCC-CEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf -999999998544698799998899879999---961289-759982231013321000122464318999613110010
Q gi|254780601|r 89 -QVGRELEWLYAKTGVVVAVCIGGVSVHRER---RDLQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163 (573)
Q Consensus 89 -Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~---~~l~~~-~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~ 163 (573)
T Consensus 72 DQV~----~l~-~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqW 146 (590)
T COG0514 72 DQVD----QLE-AAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQW 146 (590)
T ss_pred HHHH----HHH-HCCCEEEHHHCCCCHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHCCCCEEEECHHHHHHHC
T ss_conf 9999----999-75965204424367877999999986496459998813631768999997088756996217777641
Q ss_pred H--HHHHHHHH---HHHCCCCCCEEEEECCCCCCCHH-HHHHH-CCCCCCCCCCCCCCCCCCCCHHCCCCC-CCHHHHHH
Q ss_conf 0--12357888---75214334225631111222001-11121-012333323332325665200000000-00024554
Q gi|254780601|r 164 G--FRDDIEFI---LDSSPKKRRMLMFSATISPAITT-LAKNY-QKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAI 235 (573)
Q Consensus 164 g--f~~~i~~i---~~~~p~~~q~~l~SAT~~~~i~~-l~~~~-~~~p~~i~~~~~~~~~~~i~~~~~~v~-~~~k~~~l 235 (573)
T Consensus 147 GhdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~-~~sfd--RpNi~~~v~~~~~~~~q~~fi 222 (590)
T COG0514 147 GHDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIF-RGSFD--RPNLALKVVEKGEPSDQLAFL 222 (590)
T ss_pred CCCCCHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHHHCCCCCCEE-EECCC--CCHHHHHHHHCCCHHHHHHHH
T ss_conf 7743776899999985179-9977997378986789999998467886648-71589--852345564256478889998
Q ss_pred HHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCE
Q ss_conf 20010235641677513023345655555422666301048999999999986654488149985386500145788733
Q gi|254780601|r 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 (573)
Q Consensus 236 ~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~ 315 (573)
T Consensus 223 ~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRf 301 (590)
T COG0514 223 AT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRF 301 (590)
T ss_pred HH-HCCCCCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEE
T ss_conf 74-13246897289993377599999999977972577518988999999999971699868999646247767888407
Q ss_pred EEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 8970588747899986030103788860256405999999999999850
Q gi|254780601|r 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 (573)
Q Consensus 316 Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~ 364 (573)
T Consensus 302 ViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~ 350 (590)
T COG0514 302 VIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSK 350 (590)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHC
T ss_conf 9980699898999999713567877021788606300799999998515