HHsearch alignment for GI: 254780601 and conserved domain: COG0553
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].
Probab=90.63 E-value=0.2 Score=28.77 Aligned_cols=139 Identities=27% Similarity=0.197 Sum_probs=69.0
Q ss_pred HCCCCCCCHHHHHHHHHHH-----CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHH
Q ss_conf 7879878989999999997-----59969999289874689999999998610421225568827999849989999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDL-----REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVG 91 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l-----~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~ 91 (573)
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilad~mglGKTiq~i~~l~~-~~~~~~----~~~~~~liv~p~s-~~~nw~ 406 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESIK----VYLGPALIVVPAS-LLSNWK 406 (866)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHH-HHHHHC----CCCCCEEEECCHH-HHHHHH
T ss_conf 3320110488998669999987762368775752334219999999877-776401----3578726871477-776799
Q ss_pred HHHHHHHHHCCCEEEEEECCCC-H---HHHHHHH-CCC----CEEEEECCCCHHHH-HHCCCCCCCCCEEEEEECCCCCC
Q ss_conf 9999985446987999988998-7---9999961-289----75998223101332-10001224643189996131100
Q gi|254780601|r 92 RELEWLYAKTGVVVAVCIGGVS-V---HRERRDL-QNG----AHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEML 161 (573)
Q Consensus 92 ~~~~~l~~~~~~~v~~~~gg~~-~---~~q~~~l-~~~----~~iiv~TPgrl~d~-~~~~~l~l~~v~~lVlDEaD~ml 161 (573)
T Consensus 407 ~e~~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ik 485 (866)
T COG0553 407 REFEKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIK 485 (866)
T ss_pred HHHHHHCCHHHH-HHHHCCCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999861412100-2321153112103699999998621330101899999999975020554223677698997887540
Q ss_pred C
Q ss_conf 1
Q gi|254780601|r 162 D 162 (573)
Q Consensus 162 ~ 162 (573)
T Consensus 486 n 486 (866)
T COG0553 486 N 486 (866)
T ss_pred C
T ss_conf 4