HHsearch alignment for GI: 254780601 and conserved domain: COG0653
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion].
Probab=98.95 E-value=4.3e-07 Score=66.89 Aligned_cols=318 Identities=22% Similarity=0.227 Sum_probs=175.8
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 87987898999999999759969999289874689999999998610421225568827999849989999999999998
Q gi|254780601|r 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 (573)
Q Consensus 18 ~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l 97 (573)
T Consensus 77 lg~r-~~dVQliG~i~lh~g~--iaEM~TGEGKTL~atlp~ylnaL~g--k-------gVhvVTvNdYLA~RDae~m~~l 144 (822)
T COG0653 77 LGMR-HFDVQLLGGIVLHLGD--IAEMRTGEGKTLVATLPAYLNALAG--K-------GVHVVTVNDYLARRDAEWMGPL 144 (822)
T ss_pred CCCC-HHHHHHHHCHHHCCCC--EEEEECCCCHHHHHHHHHHHHHCCC--C-------CCEEEEEHHHHHHHCHHHHHHH
T ss_conf 2897-2369996123523781--4455437735999889999972389--9-------7489500487744289998999
Q ss_pred HHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHH-HHHHC------CCCCCCCCEEEEEECCCCCC-C-------
Q ss_conf 544698799998899879999961289759982231013-32100------01224643189996131100-1-------
Q gi|254780601|r 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC-DHIRG------KGLNISHLKAVVLDEADEML-D------- 162 (573)
Q Consensus 98 ~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~-d~~~~------~~l~l~~v~~lVlDEaD~ml-~------- 162 (573)
T Consensus 145 ~~~LGLsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLi 222 (822)
T COG0653 145 YEFLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLI 222 (822)
T ss_pred HHHCCCCEEECCCCCCHHHHHHHH--HCCCEECCCCCCCCCHHHHHHHCCHHHHHHCCCCEEEECCHHHEEEECCCCCEE
T ss_conf 987688232235889867868887--337543055001755222143205877550368838875514400000366523
Q ss_pred -CH---H----HHHHHHHHHHCCC---------CCCEEEEECCCCC--------------CCH-------HHH--HHHCC
Q ss_conf -00---1----2357888752143---------3422563111122--------------200-------111--12101
Q gi|254780601|r 163 -LG---F----RDDIEFILDSSPK---------KRRMLMFSATISP--------------AIT-------TLA--KNYQK 202 (573)
Q Consensus 163 -~g---f----~~~i~~i~~~~p~---------~~q~~l~SAT~~~--------------~i~-------~l~--~~~~~ 202 (573)
T Consensus 223 ISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~ 302 (822)
T COG0653 223 ISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFR 302 (822)
T ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCEEECCHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 21666567259999999998743454536531322033143429999998484101453667777568999987887632
Q ss_pred CCC------------------------------------CCCCCCCCCCCCCCCH-HCC---------------------
Q ss_conf 233------------------------------------3323332325665200-000---------------------
Q gi|254780601|r 203 DAV------------------------------------RVNIASENRQHSDIDY-RAV--------------------- 224 (573)
Q Consensus 203 ~p~------------------------------------~i~~~~~~~~~~~i~~-~~~--------------------- 224 (573)
T Consensus 303 D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gMTGTA~te~~EF~ 382 (822)
T COG0653 303 DVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFD 382 (822)
T ss_pred CCEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 87169856908998456687666868881668999984488533363664468599999876887467776056788889
Q ss_pred -------------------------CCCCCHHHHHHHHCC-C-CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf -------------------------000000245542001-0-2356416775130233456555554226663010489
Q gi|254780601|r 225 -------------------------LVALSDRDNAIVNIL-R-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 (573)
Q Consensus 225 -------------------------~v~~~~k~~~l~~ll-~-~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~ 277 (573)
T Consensus 383 ~iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk 462 (822)
T COG0653 383 VIYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAK 462 (822)
T ss_pred HHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEECCHHHHHHHHHCCCCCEEECCC
T ss_conf 87477126623788656778122003527988999999999999659988976731422526778998649974044043
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC-----------EEEEECCCC--CHHHHHHHHCCCCCCCCCCEE
Q ss_conf 9999999998665448814998538650014578873-----------389705887--478999860301037888602
Q gi|254780601|r 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE-----------LVIHAELSS--NPENLLHRSGRTGRAGRKGMS 344 (573)
Q Consensus 278 ~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~-----------~Vin~d~P~--~~~~yvHR~GRtgRag~~G~a 344 (573)
T Consensus 463 ~--h~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQ--LRGRsGRQGDpG~S 538 (822)
T COG0653 463 N--HAREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQ--LRGRAGRQGDPGSS 538 (822)
T ss_pred C--HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHH--HHCCCCCCCCCCHH
T ss_conf 6--7999998761278886631653246775203689778999707856873254215677777--50455568996433
Q ss_pred EEEECHHHH
Q ss_conf 564059999
Q gi|254780601|r 345 VFVIPQNMQ 353 (573)
Q Consensus 345 i~l~~~~e~ 353 (573)
T Consensus 539 ~F~lSleD~ 547 (822)
T COG0653 539 RFYLSLEDD 547 (822)
T ss_pred HHHHHHHHH
T ss_conf 102323899