HHsearch alignment for GI: 254780601 and conserved domain: COG1061
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=99.95 E-value=3.8e-25 Score=188.29 Aligned_cols=302 Identities=23% Similarity=0.288 Sum_probs=199.1
Q ss_pred CCCCCHHHHHHHHHHHC----CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 98789899999999975----99699992898746899999999986104212255688279998499899999999999
Q gi|254780601|r 20 YVNLTSVQEAILNPDLR----EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE 95 (573)
Q Consensus 20 ~~~pt~iQ~~~ip~~l~----g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~ 95 (573)
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~-~~~~~~-----------~~~Lvlv~~~~L~~Qw~~~~~ 101 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAE-AIAELK-----------RSTLVLVPTKELLDQWAEALK 101 (442)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH-HHHHHC-----------CCEEEEECCHHHHHHHHHHHH
T ss_conf 78885999999999996222578679996799988999999-999826-----------988999782999999999999
Q ss_pred HHHHHCCCE-EEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 985446987-9999889987999996128975998223101332100012246431899961311001001235788875
Q gi|254780601|r 96 WLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 (573)
Q Consensus 96 ~l~~~~~~~-v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~ 174 (573)
T Consensus 102 ~~~---~~~~~~g~~~~~~~-----~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~ 172 (442)
T COG1061 102 KFL---LLNDEIGIYGGGEK-----ELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSA 172 (442)
T ss_pred HHC---CCCCCCCEECCCCC-----CCCC-CCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 734---88676603368723-----3577-74899983897641555540356667599975245784779999997510
Q ss_pred HCCCCCCEEEEECCCCCCC----HHHHH-----------------HHCCCCCCCCCCCCCCCCC----CCCHHC------
Q ss_conf 2143342256311112220----01111-----------------2101233332333232566----520000------
Q gi|254780601|r 175 SSPKKRRMLMFSATISPAI----TTLAK-----------------NYQKDAVRVNIASENRQHS----DIDYRA------ 223 (573)
Q Consensus 175 ~~p~~~q~~l~SAT~~~~i----~~l~~-----------------~~~~~p~~i~~~~~~~~~~----~i~~~~------ 223 (573)
T Consensus 173 ~~~----~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~-~~t~~~~~~~~~~~~~~~~~~ 247 (442)
T COG1061 173 AYP----RLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKV-TLTEDEEREYAKESARFRELL 247 (442)
T ss_pred CCE----EEEEECCCCCCCCCCHHHHHHHCCCEEEECCHHHHHHCCCCCCEEEEEEEE-CCCHHHHHHCCHHHHHHHHHH
T ss_conf 310----467714872448775248774057556733589983378757749999862-366287774031555555555
Q ss_pred --------------CCCCCCHHHHHHHHCCCCC-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf --------------0000000245542001023-5641677513023345655555422666301048999999999986
Q gi|254780601|r 224 --------------VLVALSDRDNAIVNILRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288 (573)
Q Consensus 224 --------------~~v~~~~k~~~l~~ll~~~-~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~ 288 (573)
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~ 326 (442)
T COG1061 248 RARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILE 326 (442)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHHH
T ss_conf 4310013456777776642899999999987532688669997577999999998626774-246657899889999999
Q ss_pred HHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCC-C-CCCCEEEEEE
Q ss_conf 6544881499853865001457887338970588747899986030103-7-8886025640
Q gi|254780601|r 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-A-GRKGMSVFVI 348 (573)
Q Consensus 289 ~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgR-a-g~~G~ai~l~ 348 (573)
T Consensus 327 ~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~ 388 (442)
T COG1061 327 RFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDY 388 (442)
T ss_pred HHHCCCCEEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 98708952999961412665788875799977998799999996166347889996599999