HHsearch alignment for GI: 254780601 and conserved domain: COG1111
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair].
Probab=100.00 E-value=2.6e-31 Score=229.73 Aligned_cols=320 Identities=21% Similarity=0.306 Sum_probs=212.1
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHC
Q ss_conf 78989999999997599699992898746899999999986104212255688279998499899999999999985446
Q gi|254780601|r 22 NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT 101 (573)
Q Consensus 22 ~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~ 101 (573)
T Consensus 15 e~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~-------~-kvlfLAPTKPLV~Qh~~~~~~v~~ip 85 (542)
T COG1111 15 EPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG-------G-KVLFLAPTKPLVLQHAEFCRKVTGIP 85 (542)
T ss_pred CHHHHHHHHHHHHHHC-CEEEEECCCCCHHHHHHHHHHHHHHHCC-------C-EEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 5889999999998644-8389952875079999999999987458-------8-48996589517999999999985898
Q ss_pred CCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCC-CCHHH--------------
Q ss_conf 987999988998799999612897599822310133210001224643189996131100-10012--------------
Q gi|254780601|r 102 GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML-DLGFR-------------- 166 (573)
Q Consensus 102 ~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml-~~gf~-------------- 166 (573)
T Consensus 86 ~~~i~~ltGev~p~~R~-~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ 164 (542)
T COG1111 86 EDEIAALTGEVRPEERE-ELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPL 164 (542)
T ss_pred HHHEEEECCCCCHHHHH-HHHHHCCEEEECCHHHHHHHHCCCCCHHHCEEEEECHHHHCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 43323111777868899-98751778995638777687617667678058986235541376069999999998256843
Q ss_pred ------------HHHHHHHHHCCCC------------------CCEEEEECCCCCCCHHHHHHH----------CCCCCC
Q ss_conf ------------3578887521433------------------422563111122200111121----------012333
Q gi|254780601|r 167 ------------DDIEFILDSSPKK------------------RRMLMFSATISPAITTLAKNY----------QKDAVR 206 (573)
Q Consensus 167 ------------~~i~~i~~~~p~~------------------~q~~l~SAT~~~~i~~l~~~~----------~~~p~~ 206 (573)
T Consensus 165 ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 165 ILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGV 244 (542)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 79872389998799999998379542898457885177751404248996368589999999999999999999997695
Q ss_pred CCCCC------------------CCC------------------------CCCCCCHHCCCC------------------
Q ss_conf 32333------------------232------------------------566520000000------------------
Q gi|254780601|r 207 VNIAS------------------ENR------------------------QHSDIDYRAVLV------------------ 226 (573)
Q Consensus 207 i~~~~------------------~~~------------------------~~~~i~~~~~~v------------------ 226 (573)
T Consensus 245 ~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l 324 (542)
T COG1111 245 IESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSL 324 (542)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 32357310768999999899863576178889999999998888999999850869999999999987503520778987
Q ss_pred ----------------C----CCHHHHHHHHCC----CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCC-CC-------
Q ss_conf ----------------0----000245542001----023564167751302334565555542266630-10-------
Q gi|254780601|r 227 ----------------A----LSDRDNAIVNIL----RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV-AL------- 274 (573)
Q Consensus 227 ----------------~----~~~k~~~l~~ll----~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~-~l------- 274 (573)
T Consensus 325 ~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~ 404 (542)
T COG1111 325 LADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASRE 404 (542)
T ss_pred HCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 53820479999999740036889618999999999972389855999961475899999999852875206886114545
Q ss_pred -CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHH
Q ss_conf -489999999999866544881499853865001457887338970588747899986030103788860256405999
Q gi|254780601|r 275 -SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 (573)
Q Consensus 275 -hg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e 352 (573)
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCC-CCCEEEEEEECCC
T ss_conf 56665888999999998657851899812322467887656799956885788999860744557-7974999996586