HHsearch alignment for GI: 254780601 and conserved domain: COG1198
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=99.84 E-value=2e-18 Score=143.09 Aligned_cols=328 Identities=21% Similarity=0.332 Sum_probs=190.7
Q ss_pred CHHHHHHHHHCCCC----------------------CCCHHHHHHHHHHHCC----CCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 88999999978798----------------------7898999999999759----969999289874689999999998
Q gi|254780601|r 8 PQVIGEALSERGYV----------------------NLTSVQEAILNPDLRE----KDVLVSAQTGSGKTVAFGLALAST 61 (573)
Q Consensus 8 ~~~l~~~l~~~g~~----------------------~pt~iQ~~~ip~~l~g----~d~i~~a~TGsGKT~af~lp~l~~ 61 (573)
T Consensus 162 s~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl-~~i~~ 240 (730)
T COG1198 162 SLSVLKGLEKKGLIEIIELEPPLVVAPPDPSLSEWLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYL-EAIAK 240 (730)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHH-HHHHH
T ss_conf 38989888765735653036777522346565431103889999999999750566653676777885899999-99999
Q ss_pred HHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH---HHHHHCC-CCEEEEECCCCHHH
Q ss_conf 6104212255688279998499899999999999985446987999988998799---9996128-97599822310133
Q gi|254780601|r 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR---ERRDLQN-GAHIVVGTPGRLCD 137 (573)
Q Consensus 62 l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~---q~~~l~~-~~~iiv~TPgrl~d 137 (573)
T Consensus 241 ~L~~--------GkqvLvLVPEI~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF- 308 (730)
T COG1198 241 VLAQ--------GKQVLVLVPEIALTPQLLARFKARF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF- 308 (730)
T ss_pred HHHC--------CCEEEEEECCCCCHHHHHHHHHHHH---CCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHC-
T ss_conf 9975--------9879999565345699999999986---787453146579278999999985597159997122330-
Q ss_pred HHHCCCCCCCCCEEEEEECC-CCCCCC--HH---HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 21000122464318999613-110010--01---2357888752143342256311112220011112101233332333
Q gi|254780601|r 138 HIRGKGLNISHLKAVVLDEA-DEMLDL--GF---RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211 (573)
Q Consensus 138 ~~~~~~l~l~~v~~lVlDEa-D~ml~~--gf---~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~ 211 (573)
T Consensus 309 ------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~-~Ra~~~~~pvvLgSAT--PSLES~~~~~~g~y~~~~L~~ 379 (730)
T COG1198 309 ------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAV-LRAKKENAPVVLGSAT--PSLESYANAESGKYKLLRLTN 379 (730)
T ss_pred ------CCHHHCCEEEEECCCCCCCCCCCCCCCCHHHHHH-HHHHHCCCCEEEECCC--CCHHHHHHHHCCCEEEEECCC
T ss_conf ------7231257699702456432477777767899999-9988609988982688--778999866538558997035
Q ss_pred C-C-CCCCCCCHHCCCCCCC--HHH----HHHHHCC--CCCCCCEEEEECCC----------------------------
Q ss_conf 2-3-2566520000000000--024----5542001--02356416775130----------------------------
Q gi|254780601|r 212 E-N-RQHSDIDYRAVLVALS--DRD----NAIVNIL--RYHGAKNAIVFCST---------------------------- 253 (573)
Q Consensus 212 ~-~-~~~~~i~~~~~~v~~~--~k~----~~l~~ll--~~~~~~~~ivF~~t---------------------------- 253 (573)
T Consensus 380 R~~~a~~p~v~--iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H 457 (730)
T COG1198 380 RAGRARLPRVE--IIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLH 457 (730)
T ss_pred CCCCCCCCCCE--EEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 45556787625--8735666554677579999999999984298689997167765400425689802489999512786
Q ss_pred --------------------------------HHHHHHHHHHHHHC--CCCCCCCCCCCCHHH--HHHHHHHHHCCCEEE
Q ss_conf --------------------------------23345655555422--666301048999999--999986654488149
Q gi|254780601|r 254 --------------------------------RASVSRFTKVLAEH--LFQVVALSGELSQQE--RSNALQMMRDGRARV 297 (573)
Q Consensus 254 --------------------------------~~~~~~l~~~L~~~--g~~~~~lhg~~~q~~--R~~~~~~fr~g~~~v 297 (573)
T Consensus 458 ~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dI 537 (730)
T COG1198 458 KATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADI 537 (730)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 47980670779998998877989999736996461999999999878999479984666664356899999975799886
Q ss_pred EEECCCCCCCCCCCCCCEEEEECC------CC------CHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHH
Q ss_conf 985386500145788733897058------87------478999860301037888602564059999999999
Q gi|254780601|r 298 CIATDVAARGIDLPDLELVIHAEL------SS------NPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 (573)
Q Consensus 298 LV~TDvaaRGiDi~~v~~Vin~d~------P~------~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i 359 (573)
T Consensus 538 LiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRAsEr~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 538 LIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred EECCHHHHCCCCCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHH
T ss_conf 63416664278866631899996314315888435789999999997553267889869999679985799999