HHsearch alignment for GI: 254780601 and conserved domain: COG1200
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=99.96 E-value=1.2e-26 Score=198.44 Aligned_cols=326 Identities=22% Similarity=0.321 Sum_probs=223.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC
Q ss_conf 89999999787987898999999999759------969999289874689999999998610421225568827999849
Q gi|254780601|r 9 QVIGEALSERGYVNLTSVQEAILNPDLRE------KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 (573)
Q Consensus 9 ~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g------~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~P 82 (573)
T Consensus 250 ~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~---------~G~Q~ALMAP 319 (677)
T COG1200 250 ELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE---------AGYQAALMAP 319 (677)
T ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH---------CCCEEEEECC
T ss_conf 9999999858997-67899999999986644866667875267677789999999999987---------2881688663
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH---HHHHHCCC-CEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 9899999999999985446987999988998799---99961289-7599822310133210001224643189996131
Q gi|254780601|r 83 TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR---ERRDLQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 (573)
Q Consensus 83 TrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~---q~~~l~~~-~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD 158 (573)
T Consensus 320 TEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA-----LiQd~V~F~~LgLVIiDEQH 394 (677)
T COG1200 320 TEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA-----LIQDKVEFHNLGLVIIDEQH 394 (677)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCH-----HHHCCEEECCEEEEEEECCC
T ss_conf 7999999999999876651974898644665067999999874799897997221-----22045044202389972521
Q ss_pred CCCCCHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCC--CCCCHHCCCCCCCHHHHHH
Q ss_conf 10010012357888752143-34225631111222001111210123333233323256--6520000000000024554
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSPK-KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAI 235 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p~-~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~--~~i~~~~~~v~~~~k~~~l 235 (573)
T Consensus 395 RF---GV-~Q-R~~L~~KG~~~Ph~LvMTATPIPRTLAlt--~fgDl-dvS~Id-ElP~GRkpI~T~~--i~~~~~~~v~ 463 (677)
T COG1200 395 RF---GV-HQ-RLALREKGEQNPHVLVMTATPIPRTLALT--AFGDL-DVSIID-ELPPGRKPITTVV--IPHERRPEVY 463 (677)
T ss_pred CC---CH-HH-HHHHHHHCCCCCCEEEEECCCCHHHHHHH--HHCCC-CCHHHC-CCCCCCCCEEEEE--ECCCCHHHHH
T ss_conf 02---29-99-99999737899967999579850788988--86146-301112-5798997408999--6444479999
Q ss_pred HHCC-CCCCCCEEEEECCCH--------HHHHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2001-023564167751302--------3345655555422--6663010489999999999866544881499853865
Q gi|254780601|r 236 VNIL-RYHGAKNAIVFCSTR--------ASVSRFTKVLAEH--LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 (573)
Q Consensus 236 ~~ll-~~~~~~~~ivF~~t~--------~~~~~l~~~L~~~--g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDva 304 (573)
T Consensus 464 e~i~~ei~~GrQaY~VcPLIeeSE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVI 543 (677)
T COG1200 464 ERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVI 543 (677)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 99999997499799995253543311365499999999987054636777568986779999999980887689981389
Q ss_pred CCCCCCCCCCEEEEECCCCCHHHHHH-HHCCCCCCCCCCEEEEEECHHH----HHHHHHHH
Q ss_conf 00145788733897058874789998-6030103788860256405999----99999999
Q gi|254780601|r 305 ARGIDLPDLELVIHAELSSNPENLLH-RSGRTGRAGRKGMSVFVIPQNM----QRRAERLF 360 (573)
Q Consensus 305 aRGiDi~~v~~Vin~d~P~~~~~yvH-R~GRtgRag~~G~ai~l~~~~e----~~~~~~i~ 360 (573)
T Consensus 544 EVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~ 604 (677)
T COG1200 544 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMR 604 (677)
T ss_pred EECCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9523578870799965433037888875265578875448999967987756899999887