HHsearch alignment for GI: 254780601 and conserved domain: COG1200
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=91.69 E-value=0.4 Score=26.74 Aligned_cols=89 Identities=24% Similarity=0.338 Sum_probs=68.8
Q ss_pred CCCCCEEEEECCCHHH----HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCC-CCCCCCCCCCCE
Q ss_conf 2356416775130233----45655555422666301048999999999986654488149985386-500145788733
Q gi|254780601|r 241 YHGAKNAIVFCSTRAS----VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV-AARGIDLPDLEL 315 (573)
Q Consensus 241 ~~~~~~~ivF~~t~~~----~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDv-aaRGiDi~~v~~ 315 (573)
T Consensus 308 i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgL 387 (677)
T COG1200 308 IEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGL 387 (677)
T ss_pred HHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCEEECCEEE
T ss_conf 87288168866379999999999998766519748986446650679999998747998979972212204504420238
Q ss_pred EEEECCCCCHHHHHHHHCCCCC
Q ss_conf 8970588747899986030103
Q gi|254780601|r 316 VIHAELSSNPENLLHRSGRTGR 337 (573)
Q Consensus 316 Vin~d~P~~~~~yvHR~GRtgR 337 (573)
T Consensus 388 VIiDE--------QHRFGV~QR 401 (677)
T COG1200 388 VIIDE--------QHRFGVHQR 401 (677)
T ss_pred EEEEC--------CCCCCHHHH
T ss_conf 99725--------210229999