HHsearch alignment for GI: 254780601 and conserved domain: COG1200

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=91.69  E-value=0.4  Score=26.74  Aligned_cols=89  Identities=24%  Similarity=0.338  Sum_probs=68.8

Q ss_pred             CCCCCEEEEECCCHHH----HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCC-CCCCCCCCCCCE
Q ss_conf             2356416775130233----45655555422666301048999999999986654488149985386-500145788733
Q gi|254780601|r  241 YHGAKNAIVFCSTRAS----VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV-AARGIDLPDLEL  315 (573)
Q Consensus       241 ~~~~~~~ivF~~t~~~----~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDv-aaRGiDi~~v~~  315 (573)
T Consensus       308 i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgL  387 (677)
T COG1200         308 IEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGL  387 (677)
T ss_pred             HHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCEEECCEEE
T ss_conf             87288168866379999999999998766519748986446650679999998747998979972212204504420238


Q ss_pred             EEEECCCCCHHHHHHHHCCCCC
Q ss_conf             8970588747899986030103
Q gi|254780601|r  316 VIHAELSSNPENLLHRSGRTGR  337 (573)
Q Consensus       316 Vin~d~P~~~~~yvHR~GRtgR  337 (573)
T Consensus       388 VIiDE--------QHRFGV~QR  401 (677)
T COG1200         388 VIIDE--------QHRFGVHQR  401 (677)
T ss_pred             EEEEC--------CCCCCHHHH
T ss_conf             99725--------210229999