HHsearch alignment for GI: 254780601 and conserved domain: COG1419

Probab=96.68  E-value=0.05  Score=32.79  Aligned_cols=91  Identities=22%  Similarity=0.291  Sum_probs=57.8

Q ss_pred             CCCCEEEECCCCCCHHHHHH-HHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf             59969999289874689999-99999861042122556882799984998999999999999854469879999889987
Q gi|254780601|r   36 REKDVLVSAQTGSGKTVAFG-LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV  114 (573)
Q Consensus        36 ~g~d~i~~a~TGsGKT~af~-lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~  114 (573)
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~-------kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~vv~~~~el  272 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKK-------KVAIITTDTYRIG--AVEQLKTYADIMGVPLEVVYSPKEL  272 (407)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-------CEEEEEECCCHHH--HHHHHHHHHHHHCCCEEEECCHHHH
T ss_conf             685799989988758879999999997532576-------0689971441152--8999999999869955996399999


Q ss_pred             HHHHHHHCCCCEEEEECCCCH
Q ss_conf             999996128975998223101
Q gi|254780601|r  115 HRERRDLQNGAHIVVGTPGRL  135 (573)
Q Consensus       115 ~~q~~~l~~~~~iiv~TPgrl  135 (573)
T Consensus       273 ~~ai~~l~~~d~ILVDTaGrs  293 (407)
T COG1419         273 AEAIEALRDCDVILVDTAGRS  293 (407)
T ss_pred             HHHHHHHHCCCEEEEECCCCC
T ss_conf             999998531888999689988