HHsearch alignment for GI: 254780601 and conserved domain: COG4098

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].
Probab=99.84  E-value=8.3e-18  Score=138.93  Aligned_cols=308  Identities=18%  Similarity=0.265  Sum_probs=201.1

Q ss_pred             CCCHHHHHHHHHHH----CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             78989999999997----59969999289874689999999998610421225568827999849989999999999998
Q gi|254780601|r   22 NLTSVQEAILNPDL----REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL   97 (573)
Q Consensus        22 ~pt~iQ~~~ip~~l----~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l   97 (573)
T Consensus        97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~--------G~~vciASPRvDVclEl~~Rlk~a  167 (441)
T COG4098          97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ--------GGRVCIASPRVDVCLELYPRLKQA  167 (441)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH-HHHHHHHHHHC--------CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             327247899999999987157689997427985101-69999999965--------986998468610117778999976


Q ss_pred             HHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHH--HHH-HHH
Q ss_conf             54469879999889987999996128975998223101332100012246431899961311001001235--788-875
Q gi|254780601|r   98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD--IEF-ILD  174 (573)
Q Consensus        98 ~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~--i~~-i~~  174 (573)
T Consensus       168 --F~~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrF-------k~aFD~liIDEVDAF---P~~~d~~L~~Av~~  228 (441)
T COG4098         168 --FSNCDIDLLYGDSDSYF-------RAPLVVATTHQLLRF-------KQAFDLLIIDEVDAF---PFSDDQSLQYAVKK  228 (441)
T ss_pred             --HCCCCEEEEECCCCHHC-------CCCEEEEEHHHHHHH-------HHHCCEEEEECCCCC---CCCCCHHHHHHHHH
T ss_conf             --21498666725871313-------344799766888888-------864338998302456---56678889999997


Q ss_pred             HCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHH-------HHHHHCCCCC--CCC
Q ss_conf             2143342256311112220011112101233332333232566520000000000024-------5542001023--564
Q gi|254780601|r  175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILRYH--GAK  245 (573)
Q Consensus       175 ~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~-------~~l~~ll~~~--~~~  245 (573)
T Consensus       229 ark~~g~~IylTATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~  306 (441)
T COG4098         229 ARKKEGATIYLTATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGR  306 (441)
T ss_pred             HHCCCCCEEEEECCCHHHHHHHHHH--CCEEEEECCHHHCCCCCCCCCEEEECCHHHHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf             5123673699964880788887540--77567634465438998987428864477776644477899999999874388


Q ss_pred             EEEEECCCHHHHHHHHHHHHH-CCCC-CCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCE-EEEECCC
Q ss_conf             167751302334565555542-2666-301048999999999986654488149985386500145788733-8970588
Q gi|254780601|r  246 NAIVFCSTRASVSRFTKVLAE-HLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL-VIHAELS  322 (573)
Q Consensus       246 ~~ivF~~t~~~~~~l~~~L~~-~g~~-~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~-Vin~d~P  322 (573)
T Consensus       307 P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~  384 (441)
T COG4098         307 PVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHR  384 (441)
T ss_pred             CEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCC--CCHHHHHHHHHCCCEEEEEEEEHHHCCCCCCCCEEEEECCCCC
T ss_conf             28999250588999999998618864215653367--0178999998758638999844033266435623999547764


Q ss_pred             -CCHHHHHHHHCCCCCCC--CCCEEEEEEC---HHHHHHHHHHHH
Q ss_conf             -74789998603010378--8860256405---999999999999
Q gi|254780601|r  323 -SNPENLLHRSGRTGRAG--RKGMSVFVIP---QNMQRRAERLFR  361 (573)
Q Consensus       323 -~~~~~yvHR~GRtgRag--~~G~ai~l~~---~~e~~~~~~i~~  361 (573)
T Consensus       385 vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~keIk~  429 (441)
T COG4098         385 VFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARKEIKE  429 (441)
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             201889999752316787689875899964633899999999999