HHsearch alignment for GI: 254780601 and conserved domain: COG4098
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].
Probab=99.84 E-value=8.3e-18 Score=138.93 Aligned_cols=308 Identities=18% Similarity=0.265 Sum_probs=201.1
Q ss_pred CCCHHHHHHHHHHH----CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 78989999999997----59969999289874689999999998610421225568827999849989999999999998
Q gi|254780601|r 22 NLTSVQEAILNPDL----REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 (573)
Q Consensus 22 ~pt~iQ~~~ip~~l----~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l 97 (573)
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~--------G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ--------GGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH-HHHHHHHHHHC--------CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 327247899999999987157689997427985101-69999999965--------986998468610117778999976
Q ss_pred HHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHH--HHH-HHH
Q ss_conf 54469879999889987999996128975998223101332100012246431899961311001001235--788-875
Q gi|254780601|r 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD--IEF-ILD 174 (573)
Q Consensus 98 ~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~--i~~-i~~ 174 (573)
T Consensus 168 --F~~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrF-------k~aFD~liIDEVDAF---P~~~d~~L~~Av~~ 228 (441)
T COG4098 168 --FSNCDIDLLYGDSDSYF-------RAPLVVATTHQLLRF-------KQAFDLLIIDEVDAF---PFSDDQSLQYAVKK 228 (441)
T ss_pred --HCCCCEEEEECCCCHHC-------CCCEEEEEHHHHHHH-------HHHCCEEEEECCCCC---CCCCCHHHHHHHHH
T ss_conf --21498666725871313-------344799766888888-------864338998302456---56678889999997
Q ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHH-------HHHHHCCCCC--CCC
Q ss_conf 2143342256311112220011112101233332333232566520000000000024-------5542001023--564
Q gi|254780601|r 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILRYH--GAK 245 (573)
Q Consensus 175 ~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~-------~~l~~ll~~~--~~~ 245 (573)
T Consensus 229 ark~~g~~IylTATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~ 306 (441)
T COG4098 229 ARKKEGATIYLTATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGR 306 (441)
T ss_pred HHCCCCCEEEEECCCHHHHHHHHHH--CCEEEEECCHHHCCCCCCCCCEEEECCHHHHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf 5123673699964880788887540--77567634465438998987428864477776644477899999999874388
Q ss_pred EEEEECCCHHHHHHHHHHHHH-CCCC-CCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCE-EEEECCC
Q ss_conf 167751302334565555542-2666-301048999999999986654488149985386500145788733-8970588
Q gi|254780601|r 246 NAIVFCSTRASVSRFTKVLAE-HLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL-VIHAELS 322 (573)
Q Consensus 246 ~~ivF~~t~~~~~~l~~~L~~-~g~~-~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~-Vin~d~P 322 (573)
T Consensus 307 P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~ 384 (441)
T COG4098 307 PVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHR 384 (441)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCC--CCHHHHHHHHHCCCEEEEEEEEHHHCCCCCCCCEEEEECCCCC
T ss_conf 28999250588999999998618864215653367--0178999998758638999844033266435623999547764
Q ss_pred -CCHHHHHHHHCCCCCCC--CCCEEEEEEC---HHHHHHHHHHHH
Q ss_conf -74789998603010378--8860256405---999999999999
Q gi|254780601|r 323 -SNPENLLHRSGRTGRAG--RKGMSVFVIP---QNMQRRAERLFR 361 (573)
Q Consensus 323 -~~~~~yvHR~GRtgRag--~~G~ai~l~~---~~e~~~~~~i~~ 361 (573)
T Consensus 385 vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~keIk~ 429 (441)
T COG4098 385 VFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARKEIKE 429 (441)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 201889999752316787689875899964633899999999999