HHsearch alignment for GI: 254780601 and conserved domain: COG4889
>COG4889 Predicted helicase [General function prediction only].
Probab=99.09 E-value=2.2e-09 Score=82.24 Aligned_cols=323 Identities=18% Similarity=0.229 Sum_probs=172.6
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHCCC-----CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHH
Q ss_conf 999997879878989999999997599-----699992898746899999999986104212255688279998499899
Q gi|254780601|r 12 GEALSERGYVNLTSVQEAILNPDLREK-----DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTREL 86 (573)
Q Consensus 12 ~~~l~~~g~~~pt~iQ~~~ip~~l~g~-----d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrEL 86 (573)
T Consensus 151 ~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMA-cGTGKTfTs-LkisEala~----------~~iL~LvPSIsL 218 (1518)
T COG4889 151 QDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMA-CGTGKTFTS-LKISEALAA----------ARILFLVPSISL 218 (1518)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE-CCCCCCCHH-HHHHHHHHH----------HHEEEECCHHHH
T ss_conf 65656478789983678999999862551667758983-378862137-889999864----------023654351899
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCH--------------------HHHHHHH-----CCCCEEEEECCCCHHHHHHC
Q ss_conf 9999999999854469879999889987--------------------9999961-----28975998223101332100
Q gi|254780601|r 87 AVQVGRELEWLYAKTGVVVAVCIGGVSV--------------------HRERRDL-----QNGAHIVVGTPGRLCDHIRG 141 (573)
Q Consensus 87 a~Qv~~~~~~l~~~~~~~v~~~~gg~~~--------------------~~q~~~l-----~~~~~iiv~TPgrl~d~~~~ 141 (573)
T Consensus 219 LsQTlrew~~-~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA 297 (1518)
T COG4889 219 LSQTLREWTA-QKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA 297 (1518)
T ss_pred HHHHHHHHHH-CCCCCCEEEEEECCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH
T ss_conf 9999998853-466551257886365234441232120478887574999999998753337838999702114878999
Q ss_pred CCCCCCCCEEEEEECCCCCCCC--------HHH--------HHHHHH-HHHCCC-----------CCCEEEEE----CCC
Q ss_conf 0122464318999613110010--------012--------357888-752143-----------34225631----111
Q gi|254780601|r 142 KGLNISHLKAVVLDEADEMLDL--------GFR--------DDIEFI-LDSSPK-----------KRRMLMFS----ATI 189 (573)
Q Consensus 142 ~~l~l~~v~~lVlDEaD~ml~~--------gf~--------~~i~~i-~~~~p~-----------~~q~~l~S----AT~ 189 (573)
T Consensus 298 Qe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~f 377 (1518)
T COG4889 298 QEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTF 377 (1518)
T ss_pred HHCCCCCCCEEEECCHHCCCCCEECCCCCCCCEEECCCCCHHHHHHHHCCCCCHHHCHHHHHHHHHCCCEEECCCHHHHH
T ss_conf 97499975379744000144623225772010453376415888766600686021225453032114301125526554
Q ss_pred CCCCHHH------HHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCC-CHHH--------------------HHHHHC-CCC
Q ss_conf 2220011------11210123333233323256652000000000-0024--------------------554200-102
Q gi|254780601|r 190 SPAITTL------AKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRD--------------------NAIVNI-LRY 241 (573)
Q Consensus 190 ~~~i~~l------~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~-~~k~--------------------~~l~~l-l~~ 241 (573)
T Consensus 378 Geef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ 457 (1518)
T COG4889 378 GEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADT 457 (1518)
T ss_pred CHHHHCCCHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 54662122677876401005258999831766524565630686434243445677777665665325536543676775
Q ss_pred CCCCEEEEECCCHHHHHHHHHH-----------HHHC--CCC--CCCCCCCCCHHHHHHHHH---HHHCCCEEEEEECCC
Q ss_conf 3564167751302334565555-----------5422--666--301048999999999986---654488149985386
Q gi|254780601|r 242 HGAKNAIVFCSTRASVSRFTKV-----------LAEH--LFQ--VVALSGELSQQERSNALQ---MMRDGRARVCIATDV 303 (573)
Q Consensus 242 ~~~~~~ivF~~t~~~~~~l~~~-----------L~~~--g~~--~~~lhg~~~q~~R~~~~~---~fr~g~~~vLV~TDv 303 (573)
T Consensus 458 ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRc 537 (1518)
T COG4889 458 APMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARC 537 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHEEECCCHH
T ss_conf 07889999987667788788888999999999997326683688751467300888877886158899421011013315
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCC--CC-CCEEEEE
Q ss_conf 50014578873389705887478999860301037--88-8602564
Q gi|254780601|r 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GR-KGMSVFV 347 (573)
Q Consensus 304 aaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRa--g~-~G~ai~l 347 (573)
T Consensus 538 LSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILP 584 (1518)
T COG4889 538 LSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILP 584 (1518)
T ss_pred HHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 42378853412379866851288999999999872768766569987