HHsearch alignment for GI: 254780601 and conserved domain: PRK00254

>PRK00254 ski2-like helicase; Provisional.
Probab=100.00  E-value=1.8e-39  Score=284.60  Aligned_cols=338  Identities=25%  Similarity=0.286  Sum_probs=247.4

Q ss_pred             CCCCC-CCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf             99777-9988999999978798789899999999-975996999928987468999999999861042122556882799
Q gi|254780601|r    1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNP-DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL   78 (573)
Q Consensus         1 m~~f~-~l~~~l~~~l~~~g~~~pt~iQ~~~ip~-~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~l   78 (573)
T Consensus         1 m~i~~l~~~~~~~~~~~~~gI~~l~p~Q~e~l~~g~~~g~NllvsaPT~sGKTlvAElail~~~l~~~--------~k~i   72 (717)
T PRK00254          1 MRVEELRVDERIKEILKERGIEELYPPQAEALTSGVLEGKNLLIAIPTASGKTLIAEIAMVNKLLREG--------GKAV   72 (717)
T ss_pred             CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC--------CEEE
T ss_conf             95444399989999999769872689999998742336981899899887489999999999998529--------9299


Q ss_pred             EECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf             98499899999999999985446987999988998799999612897599822310133210001224643189996131
Q gi|254780601|r   79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD  158 (573)
Q Consensus        79 il~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD  158 (573)
T Consensus        73 yi~P~kALa~EK~~~f~~~-~~~g~~V~~~tGd~~~~~~--~l-~~~dIiV~T~Ek~dsl~r~~~~~l~~i~lvViDEiH  148 (717)
T PRK00254         73 YLVPLKALAEEKFREFKDW-EVLGLRVAMATGDYDSKDE--WL-GKYDIIIATAEKFDSLLRHGSSWIKDVKLLVADEIH  148 (717)
T ss_pred             EECCHHHHHHHHHHHHHHH-HHCCCEEEEEECCCCCCCC--CC-CCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECEE
T ss_conf             9926799999999999877-7449889897489888701--04-689999988899999997162565326989997607


Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCC------CCCCCHHH
Q ss_conf             100100123578887521433422563111122200111121012333323332325665200000------00000024
Q gi|254780601|r  159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV------LVALSDRD  232 (573)
Q Consensus       159 ~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~------~v~~~~k~  232 (573)
T Consensus       149 ~igD~~RG~~lE~~l~~l~~~~qiIgLSATi~N-~~~la~-WL~-a~~--~~~~~RPVpL~~~v~~~~~~~~~~~~~~~~  223 (717)
T PRK00254        149 LIGSRDRGATLEFILTHMLGRAQIIGLSATIGN-PEELAE-WLN-AEL--IVSDWRPVKLRKGVFYQGFVFWEDGKIDRY  223 (717)
T ss_pred             ECCCCCCHHHHHHHHHHHHCCCEEEEEEEECCC-HHHHHH-HHC-CCC--CCCCCCCCCEEEEEEECCEEEECCCCCHHH
T ss_conf             888987409999999951003669999633499-899999-828-852--156885775276442066011045620544


Q ss_pred             HHHHHCC-C-CCCCCEEEEECCCHHHHHHHHHHHHHC---------------------------------CCCCCCCCCC
Q ss_conf             5542001-0-235641677513023345655555422---------------------------------6663010489
Q gi|254780601|r  233 NAIVNIL-R-YHGAKNAIVFCSTRASVSRFTKVLAEH---------------------------------LFQVVALSGE  277 (573)
Q Consensus       233 ~~l~~ll-~-~~~~~~~ivF~~t~~~~~~l~~~L~~~---------------------------------g~~~~~lhg~  277 (573)
T Consensus       224 ~~~~~l~~~~~~~~~~~LVF~~tR~~~e~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~l~~GVafHHAG  303 (717)
T PRK00254        224 NSWEELVYDAVKRGKGALIFVNMRRKAEKTALELAKKIKNLLTKPELRELKELADSLEENPTNEKLAKALRGGVAFHHAG  303 (717)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHCCC
T ss_conf             30789999999749981899955799999999999988763076889999999999873765189999997083121589


Q ss_pred             CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECC---------CCCHHHHHHHHCCCCCCCC--CCEEEE
Q ss_conf             99999999986654488149985386500145788733897058---------8747899986030103788--860256
Q gi|254780601|r  278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL---------SSNPENLLHRSGRTGRAGR--KGMSVF  346 (573)
Q Consensus       278 ~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~---------P~~~~~yvHR~GRtgRag~--~G~ai~  346 (573)
T Consensus       304 L~~~~R~lVE~~Fr~g~Ikvl~aTsTLA~GVNLPAr~VIi~-~~~~~~~~g~~~i~~~e~~QM~GRAGR~G~D~~G~~ii  382 (717)
T PRK00254        304 LGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAFRVIIR-DTWRYSEFGMERIPVLEIQQMMGRAGRPKYDEVGEAII  382 (717)
T ss_pred             CCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEEEEEE-CCEEECCCCCEECCHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf             99889999999998799589981644650457760599992-65670799723787536888625069998788850899


Q ss_pred             EECHHHHHHH
Q ss_conf             4059999999
Q gi|254780601|r  347 VIPQNMQRRA  356 (573)
Q Consensus       347 l~~~~e~~~~  356 (573)
T Consensus       383 i~~~~~~~~~  392 (717)
T PRK00254        383 VSTTEDPSKV  392 (717)
T ss_pred             EECCCCHHHH
T ss_conf             9548578999