HHsearch alignment for GI: 254780601 and conserved domain: PRK00254
>PRK00254 ski2-like helicase; Provisional.
Probab=100.00 E-value=1.8e-39 Score=284.60 Aligned_cols=338 Identities=25% Similarity=0.286 Sum_probs=247.4
Q ss_pred CCCCC-CCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 99777-9988999999978798789899999999-975996999928987468999999999861042122556882799
Q gi|254780601|r 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNP-DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 (573)
Q Consensus 1 m~~f~-~l~~~l~~~l~~~g~~~pt~iQ~~~ip~-~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~l 78 (573)
T Consensus 1 m~i~~l~~~~~~~~~~~~~gI~~l~p~Q~e~l~~g~~~g~NllvsaPT~sGKTlvAElail~~~l~~~--------~k~i 72 (717)
T PRK00254 1 MRVEELRVDERIKEILKERGIEELYPPQAEALTSGVLEGKNLLIAIPTASGKTLIAEIAMVNKLLREG--------GKAV 72 (717)
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC--------CEEE
T ss_conf 95444399989999999769872689999998742336981899899887489999999999998529--------9299
Q ss_pred EECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 98499899999999999985446987999988998799999612897599822310133210001224643189996131
Q gi|254780601|r 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 (573)
Q Consensus 79 il~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD 158 (573)
T Consensus 73 yi~P~kALa~EK~~~f~~~-~~~g~~V~~~tGd~~~~~~--~l-~~~dIiV~T~Ek~dsl~r~~~~~l~~i~lvViDEiH 148 (717)
T PRK00254 73 YLVPLKALAEEKFREFKDW-EVLGLRVAMATGDYDSKDE--WL-GKYDIIIATAEKFDSLLRHGSSWIKDVKLLVADEIH 148 (717)
T ss_pred EECCHHHHHHHHHHHHHHH-HHCCCEEEEEECCCCCCCC--CC-CCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECEE
T ss_conf 9926799999999999877-7449889897489888701--04-689999988899999997162565326989997607
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCC------CCCCCHHH
Q ss_conf 100100123578887521433422563111122200111121012333323332325665200000------00000024
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV------LVALSDRD 232 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~------~v~~~~k~ 232 (573)
T Consensus 149 ~igD~~RG~~lE~~l~~l~~~~qiIgLSATi~N-~~~la~-WL~-a~~--~~~~~RPVpL~~~v~~~~~~~~~~~~~~~~ 223 (717)
T PRK00254 149 LIGSRDRGATLEFILTHMLGRAQIIGLSATIGN-PEELAE-WLN-AEL--IVSDWRPVKLRKGVFYQGFVFWEDGKIDRY 223 (717)
T ss_pred ECCCCCCHHHHHHHHHHHHCCCEEEEEEEECCC-HHHHHH-HHC-CCC--CCCCCCCCCEEEEEEECCEEEECCCCCHHH
T ss_conf 888987409999999951003669999633499-899999-828-852--156885775276442066011045620544
Q ss_pred HHHHHCC-C-CCCCCEEEEECCCHHHHHHHHHHHHHC---------------------------------CCCCCCCCCC
Q ss_conf 5542001-0-235641677513023345655555422---------------------------------6663010489
Q gi|254780601|r 233 NAIVNIL-R-YHGAKNAIVFCSTRASVSRFTKVLAEH---------------------------------LFQVVALSGE 277 (573)
Q Consensus 233 ~~l~~ll-~-~~~~~~~ivF~~t~~~~~~l~~~L~~~---------------------------------g~~~~~lhg~ 277 (573)
T Consensus 224 ~~~~~l~~~~~~~~~~~LVF~~tR~~~e~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~l~~GVafHHAG 303 (717)
T PRK00254 224 NSWEELVYDAVKRGKGALIFVNMRRKAEKTALELAKKIKNLLTKPELRELKELADSLEENPTNEKLAKALRGGVAFHHAG 303 (717)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHCCC
T ss_conf 30789999999749981899955799999999999988763076889999999999873765189999997083121589
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECC---------CCCHHHHHHHHCCCCCCCC--CCEEEE
Q ss_conf 99999999986654488149985386500145788733897058---------8747899986030103788--860256
Q gi|254780601|r 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL---------SSNPENLLHRSGRTGRAGR--KGMSVF 346 (573)
Q Consensus 278 ~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~---------P~~~~~yvHR~GRtgRag~--~G~ai~ 346 (573)
T Consensus 304 L~~~~R~lVE~~Fr~g~Ikvl~aTsTLA~GVNLPAr~VIi~-~~~~~~~~g~~~i~~~e~~QM~GRAGR~G~D~~G~~ii 382 (717)
T PRK00254 304 LGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAFRVIIR-DTWRYSEFGMERIPVLEIQQMMGRAGRPKYDEVGEAII 382 (717)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEEEEEE-CCEEECCCCCEECCHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 99889999999998799589981644650457760599992-65670799723787536888625069998788850899
Q ss_pred EECHHHHHHH
Q ss_conf 4059999999
Q gi|254780601|r 347 VIPQNMQRRA 356 (573)
Q Consensus 347 l~~~~e~~~~ 356 (573)
T Consensus 383 i~~~~~~~~~ 392 (717)
T PRK00254 383 VSTTEDPSKV 392 (717)
T ss_pred EECCCCHHHH
T ss_conf 9548578999