HHsearch alignment for GI: 254780601 and conserved domain: PRK01297
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=100.00 E-value=0 Score=777.84 Aligned_cols=372 Identities=32% Similarity=0.503 Sum_probs=351.6
Q ss_pred CCCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCCEEE
Q ss_conf 9777--99889999999787987898999999999759969999289874689999999998610421225-56882799
Q gi|254780601|r 2 KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-PASAPLAL 78 (573)
Q Consensus 2 ~~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~-~~~~~~~l 78 (573)
T Consensus 84 ~~F~dl~L~~~ll~aL~~~Gf~~PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~p~aL 163 (472)
T PRK01297 84 TRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRAL 163 (472)
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEE
T ss_conf 71864788999999999779999999999999999769988998999867999999999999971775101136895299
Q ss_pred EECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC-CCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 98499899999999999985446987999988998799999612-89759982231013321000122464318999613
Q gi|254780601|r 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 (573)
Q Consensus 79 il~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~-~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEa 157 (573)
T Consensus 164 IL~PTRELa~QI~~~~~~L~~~~~l~v~~~~GG~~~~~q~~~l~~~~~dIvVaTPGRL~~l~~~~~~~l~~v~~lVlDEA 243 (472)
T PRK01297 164 IIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEA 243 (472)
T ss_pred EECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCEECCCCEEEEEECH
T ss_conf 98799999999999999974627976999978988799999985589988997979999874348254255229999873
Q ss_pred CCCCCCHHHHHHHHHHHHCCC--CCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHH
Q ss_conf 110010012357888752143--342256311112220011112101233332333232566520000000000024554
Q gi|254780601|r 158 DEMLDLGFRDDIEFILDSSPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 (573)
Q Consensus 158 D~ml~~gf~~~i~~i~~~~p~--~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l 235 (573)
T Consensus 244 D~LLd~gf~~~v~~Il~~~p~~~~rQ~~lfSATl~~~v~~l~~~~~~~p~~v~i~~~~~~~~~v~q~~~~~~~~dk~~~L 323 (472)
T PRK01297 244 DRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLL 323 (472)
T ss_pred HHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCHHHHHHHH
T ss_conf 12102575999999999689855716999852577899999999779988999657766777602899981888999999
Q ss_pred HHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCE
Q ss_conf 20010235641677513023345655555422666301048999999999986654488149985386500145788733
Q gi|254780601|r 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 (573)
Q Consensus 236 ~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~ 315 (573)
T Consensus 324 ~~ll~~~~~~k~IIF~nt~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~iLVaTDvaaRGLDi~~V~~ 403 (472)
T PRK01297 324 YNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISH 403 (472)
T ss_pred HHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCE
T ss_conf 99998479873689617499999999876544961686437789999999999997699969988661336677578888
Q ss_pred EEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 8970588747899986030103788860256405999999999999850664105689
Q gi|254780601|r 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 (573)
Q Consensus 316 Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~P 373 (573)
T Consensus 404 VInyD~P~~~~~YIHRiGRTGRaG~~G~aisfv~~~d~~~~~~ie~~l~~~i~~~~~~ 461 (472)
T PRK01297 404 VINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPP 461 (472)
T ss_pred EEEECCCCCHHHHHHCCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9996898976760102653126899637999863889999999999988978415886