HHsearch alignment for GI: 254780601 and conserved domain: PRK01297
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=96.47 E-value=0.017 Score=36.04 Aligned_cols=71 Identities=23% Similarity=0.373 Sum_probs=51.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHH----CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-----CCCCCC-CCCCCCC
Q ss_conf 4167751302334565555542----26663010489999999999866544881499853-----865001-4578873
Q gi|254780601|r 245 KNAIVFCSTRASVSRFTKVLAE----HLFQVVALSGELSQQERSNALQMMRDGRARVCIAT-----DVAARG-IDLPDLE 314 (573)
Q Consensus 245 ~~~ivF~~t~~~~~~l~~~L~~----~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~T-----DvaaRG-iDi~~v~ 314 (573)
T Consensus 160 p~aLIL~PTRELa~QI~~~~~~L~~~~~l~v~~~~GG~~~~~q---~~~l~~~~~dIvVaTPGRL~~l~~~~~~~l~~v~ 236 (472)
T PRK01297 160 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQ---LKQLEARFCDILVATPGRLLDFNQRGEVHLDMVE 236 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH---HHHHHCCCCCEEEECHHHHHHHHCCCCEECCCCE
T ss_conf 5299987999999999999999746279769999789887999---9998558998899797999987434825425522
Q ss_pred EEEE
Q ss_conf 3897
Q gi|254780601|r 315 LVIH 318 (573)
Q Consensus 315 ~Vin 318 (573)
T Consensus 237 ~lVl 240 (472)
T PRK01297 237 VMVL 240 (472)
T ss_pred EEEE
T ss_conf 9999