HHsearch alignment for GI: 254780601 and conserved domain: PRK02362
>PRK02362 ski2-like helicase; Provisional.
Probab=100.00 E-value=1.8e-39 Score=284.61 Aligned_cols=328 Identities=24% Similarity=0.272 Sum_probs=236.0
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCH
Q ss_conf 9988999999978798789899999999-975996999928987468999999999861042122556882799984998
Q gi|254780601|r 6 NIPQVIGEALSERGYVNLTSVQEAILNP-DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTR 84 (573)
Q Consensus 6 ~l~~~l~~~l~~~g~~~pt~iQ~~~ip~-~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTr 84 (573)
T Consensus 7 ~LP~~~~~~~~~~gI~~Lyp~Q~eal~~gl~~g~NlvvsaPTgsGKTlvAElail~~l~~g---------~k~vYi~P~k 77 (736)
T PRK02362 7 PLPDGVIDFYEGSGIEELYPPQAEAVEAGLLEGKNLLAAIPTASGKTLLAELAMLKAIAEG---------GKALYIVPLR 77 (736)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC---------CEEEEECCHH
T ss_conf 9998999999976997578999999986435698189979999858999999999999839---------9799985879
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCH
Q ss_conf 99999999999985446987999988998799999612897599822310133210001224643189996131100100
Q gi|254780601|r 85 ELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG 164 (573)
Q Consensus 85 ELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~g 164 (573)
T Consensus 78 ALa~EK~~~~~~~~-~~gi~V~~~tGd~~~~~~--~l~-~~dIiV~T~EK~dsl~r~~~~~l~~v~lVViDEiHl-i~d~ 152 (736)
T PRK02362 78 ALASEKFEEFSEFS-ELGLRVGISTGDYDRRDE--YLG-RNDIIVATSEKTDSLLRNGAPWIDDISCVVADEVHL-IDSP 152 (736)
T ss_pred HHHHHHHHHHHHHH-CCCCEEEEEECCCCCCHH--HCC-CCCEEEECHHHHHHHHHCCCHHHHCCCEEEEECCEE-ECCC
T ss_conf 99999999999874-579989998089887831--436-899999997999999844816765089899817678-6688
Q ss_pred HH-HHHHHHHH---HCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCC-----------CCCCC
Q ss_conf 12-35788875---21433422563111122200111121012333323332325665200000-----------00000
Q gi|254780601|r 165 FR-DDIEFILD---SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-----------LVALS 229 (573)
Q Consensus 165 f~-~~i~~i~~---~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~-----------~v~~~ 229 (573)
T Consensus 153 ~RG~~lE~~lskl~~~~~~iqiIgLSATl~N~-~~la~-WL~a~-~~~--s~~RPV~L~~~v~~~~~~~~~~~~~~~~~~ 227 (736)
T PRK02362 153 NRGPTLEVTLAKLRRLNPDMQVIALSATIGNA-DELAA-WLDAE-LVD--SEWRPVDLREGVFYGGAIHFKDTERELEVP 227 (736)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCH-HHHHH-HHCCC-CCC--CCCCCCCCEEEEEECCEECCCCCCCHHCCC
T ss_conf 72499999999997338774389862455899-99999-83886-215--898886755656507701035100300025
Q ss_pred HHHHHHHHCCC-CCCCCEEEEECCCHHHHHHHHHHHHHC------------------------------------CCCCC
Q ss_conf 02455420010-235641677513023345655555422------------------------------------66630
Q gi|254780601|r 230 DRDNAIVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEH------------------------------------LFQVV 272 (573)
Q Consensus 230 ~k~~~l~~ll~-~~~~~~~ivF~~t~~~~~~l~~~L~~~------------------------------------g~~~~ 272 (573)
T Consensus 228 ~~~~~~~l~~~~~~~~~~~LVF~~SR~~~e~~A~~la~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~L~~~l~~GVa 307 (736)
T PRK02362 228 SKDEDLNLVLDTLDEGGQCLVFVSSRRNAEAFAKRAASALKKALSAEEREALAGIAEEIREVSETDTSKVLADCVRSGAA 307 (736)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEE
T ss_conf 64058999999997399069998249999999999987524215756688999999999734442035999999960948
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEE----EC-----CCCCHHHHHHHHCCCCCCC--CC
Q ss_conf 1048999999999986654488149985386500145788733897----05-----8874789998603010378--88
Q gi|254780601|r 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH----AE-----LSSNPENLLHRSGRTGRAG--RK 341 (573)
Q Consensus 273 ~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin----~d-----~P~~~~~yvHR~GRtgRag--~~ 341 (573)
T Consensus 308 fHHAGL~~~~R~lVE~~Fr~g~Ikvl~aTsTLA~GVNLPAr~VIi~~~~~~~~~~g~~~l~~~e~~QM~GRAGRpg~D~~ 387 (736)
T PRK02362 308 FHHAGLSREHRELVEEGFRDGLIKVISSTPTLAAGLNLPARRVIIRDYRRYDSGAGMQPIPVLEYHQMAGRAGRPRLDPY 387 (736)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCEEEEEEECCEEECCCCCCEECCHHHHHHHHHHCCCCCCCCC
T ss_conf 51599998999999999987998389725166505578526999804367369888336889999999852489988988
Q ss_pred CEEEEEECHHH
Q ss_conf 60256405999
Q gi|254780601|r 342 GMSVFVIPQNM 352 (573)
Q Consensus 342 G~ai~l~~~~e 352 (573)
T Consensus 388 G~aili~~~~~ 398 (736)
T PRK02362 388 GEAVLLAKSYD 398 (736)
T ss_pred CEEEEEECCHH
T ss_conf 62999967827