HHsearch alignment for GI: 254780601 and conserved domain: PRK02362

>PRK02362 ski2-like helicase; Provisional.
Probab=100.00  E-value=1.8e-39  Score=284.61  Aligned_cols=328  Identities=24%  Similarity=0.272  Sum_probs=236.0

Q ss_pred             CCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCH
Q ss_conf             9988999999978798789899999999-975996999928987468999999999861042122556882799984998
Q gi|254780601|r    6 NIPQVIGEALSERGYVNLTSVQEAILNP-DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTR   84 (573)
Q Consensus         6 ~l~~~l~~~l~~~g~~~pt~iQ~~~ip~-~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTr   84 (573)
T Consensus         7 ~LP~~~~~~~~~~gI~~Lyp~Q~eal~~gl~~g~NlvvsaPTgsGKTlvAElail~~l~~g---------~k~vYi~P~k   77 (736)
T PRK02362          7 PLPDGVIDFYEGSGIEELYPPQAEAVEAGLLEGKNLLAAIPTASGKTLLAELAMLKAIAEG---------GKALYIVPLR   77 (736)
T ss_pred             CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC---------CEEEEECCHH
T ss_conf             9998999999976997578999999986435698189979999858999999999999839---------9799985879


Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCH
Q ss_conf             99999999999985446987999988998799999612897599822310133210001224643189996131100100
Q gi|254780601|r   85 ELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG  164 (573)
Q Consensus        85 ELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~g  164 (573)
T Consensus        78 ALa~EK~~~~~~~~-~~gi~V~~~tGd~~~~~~--~l~-~~dIiV~T~EK~dsl~r~~~~~l~~v~lVViDEiHl-i~d~  152 (736)
T PRK02362         78 ALASEKFEEFSEFS-ELGLRVGISTGDYDRRDE--YLG-RNDIIVATSEKTDSLLRNGAPWIDDISCVVADEVHL-IDSP  152 (736)
T ss_pred             HHHHHHHHHHHHHH-CCCCEEEEEECCCCCCHH--HCC-CCCEEEECHHHHHHHHHCCCHHHHCCCEEEEECCEE-ECCC
T ss_conf             99999999999874-579989998089887831--436-899999997999999844816765089899817678-6688


Q ss_pred             HH-HHHHHHHH---HCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCC-----------CCCCC
Q ss_conf             12-35788875---21433422563111122200111121012333323332325665200000-----------00000
Q gi|254780601|r  165 FR-DDIEFILD---SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-----------LVALS  229 (573)
Q Consensus       165 f~-~~i~~i~~---~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~-----------~v~~~  229 (573)
T Consensus       153 ~RG~~lE~~lskl~~~~~~iqiIgLSATl~N~-~~la~-WL~a~-~~~--s~~RPV~L~~~v~~~~~~~~~~~~~~~~~~  227 (736)
T PRK02362        153 NRGPTLEVTLAKLRRLNPDMQVIALSATIGNA-DELAA-WLDAE-LVD--SEWRPVDLREGVFYGGAIHFKDTERELEVP  227 (736)
T ss_pred             CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCH-HHHHH-HHCCC-CCC--CCCCCCCCEEEEEECCEECCCCCCCHHCCC
T ss_conf             72499999999997338774389862455899-99999-83886-215--898886755656507701035100300025


Q ss_pred             HHHHHHHHCCC-CCCCCEEEEECCCHHHHHHHHHHHHHC------------------------------------CCCCC
Q ss_conf             02455420010-235641677513023345655555422------------------------------------66630
Q gi|254780601|r  230 DRDNAIVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEH------------------------------------LFQVV  272 (573)
Q Consensus       230 ~k~~~l~~ll~-~~~~~~~ivF~~t~~~~~~l~~~L~~~------------------------------------g~~~~  272 (573)
T Consensus       228 ~~~~~~~l~~~~~~~~~~~LVF~~SR~~~e~~A~~la~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~L~~~l~~GVa  307 (736)
T PRK02362        228 SKDEDLNLVLDTLDEGGQCLVFVSSRRNAEAFAKRAASALKKALSAEEREALAGIAEEIREVSETDTSKVLADCVRSGAA  307 (736)
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEE
T ss_conf             64058999999997399069998249999999999987524215756688999999999734442035999999960948


Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEE----EC-----CCCCHHHHHHHHCCCCCCC--CC
Q ss_conf             1048999999999986654488149985386500145788733897----05-----8874789998603010378--88
Q gi|254780601|r  273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH----AE-----LSSNPENLLHRSGRTGRAG--RK  341 (573)
Q Consensus       273 ~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin----~d-----~P~~~~~yvHR~GRtgRag--~~  341 (573)
T Consensus       308 fHHAGL~~~~R~lVE~~Fr~g~Ikvl~aTsTLA~GVNLPAr~VIi~~~~~~~~~~g~~~l~~~e~~QM~GRAGRpg~D~~  387 (736)
T PRK02362        308 FHHAGLSREHRELVEEGFRDGLIKVISSTPTLAAGLNLPARRVIIRDYRRYDSGAGMQPIPVLEYHQMAGRAGRPRLDPY  387 (736)
T ss_pred             EECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCEEEEEEECCEEECCCCCCEECCHHHHHHHHHHCCCCCCCCC
T ss_conf             51599998999999999987998389725166505578526999804367369888336889999999852489988988


Q ss_pred             CEEEEEECHHH
Q ss_conf             60256405999
Q gi|254780601|r  342 GMSVFVIPQNM  352 (573)
Q Consensus       342 G~ai~l~~~~e  352 (573)
T Consensus       388 G~aili~~~~~  398 (736)
T PRK02362        388 GEAVLLAKSYD  398 (736)
T ss_pred             CEEEEEECCHH
T ss_conf             62999967827