HHsearch alignment for GI: 254780601 and conserved domain: PRK04837
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=100.00 E-value=0 Score=798.81 Aligned_cols=372 Identities=31% Similarity=0.443 Sum_probs=352.8
Q ss_pred CCCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCEEE
Q ss_conf 9777--998899999997879878989999999997599699992898746899999999986104212-2556882799
Q gi|254780601|r 2 KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-FSPASAPLAL 78 (573)
Q Consensus 2 ~~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~-~~~~~~~~~l 78 (573)
T Consensus 9 ~~F~~lgL~~~ll~~L~~~g~~~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~ll~~~~~~~~~~~~p~aL 88 (423)
T PRK04837 9 QKFSDFALHPKVVEALEKKGFEYCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHHLLSHPAPEGRKVNQPRAL 88 (423)
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
T ss_conf 84824796999999999779999999999999999679988998999874999999999999983745334556786189
Q ss_pred EECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 98499899999999999985446987999988998799999612897599822310133210001224643189996131
Q gi|254780601|r 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 (573)
Q Consensus 79 il~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD 158 (573)
T Consensus 89 IL~PTRELa~Qi~~~~~~l~~~~~l~~~~~~GG~~~~~q~~~l~~~~dIlV~TPgRL~d~~~~~~~~l~~i~~lVlDEAD 168 (423)
T PRK04837 89 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGEGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 (423)
T ss_pred EEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHH
T ss_conf 99388999999999999974325845999989988799999871799989989189999986422123664289963446
Q ss_pred CCCCCHHHHHHHHHHHHCC--CCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHH
Q ss_conf 1001001235788875214--33422563111122200111121012333323332325665200000000000245542
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p--~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~ 236 (573)
T Consensus 169 ~lld~gF~~~i~~i~~~~p~~~~r~~~lfSATl~~~v~~la~~~l~~p~~i~v~~~~~~~~~i~~~~~~~~~~~K~~~L~ 248 (423)
T PRK04837 169 RMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQ 248 (423)
T ss_pred HHHHCCCHHHHHHHHHHCCCCHHEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECHHHHHHHHH
T ss_conf 54302639999999996896221089997036888999999997789879996577656654269999917277999999
Q ss_pred HCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 00102356416775130233456555554226663010489999999999866544881499853865001457887338
Q gi|254780601|r 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 (573)
Q Consensus 237 ~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~V 316 (573)
T Consensus 249 ~ll~~~~~~k~iIF~nt~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~l~~F~~g~~~vLVaTDvaaRGLDi~~V~~V 328 (423)
T PRK04837 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVPQKKRLRILEQFTRGDLDILVATDVAARGLHIPDVTHV 328 (423)
T ss_pred HHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEE
T ss_conf 99984088746886162888999999997659817872254579999999999976999899870043277772679889
Q ss_pred EEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 970588747899986030103788860256405999999999999850664105689
Q gi|254780601|r 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 (573)
Q Consensus 317 in~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~P 373 (573)
T Consensus 329 InyD~P~~~~~YiHRiGRTgRaG~~G~aitf~~~~~~~~l~~ie~~~~~~i~~~~~~ 385 (423)
T PRK04837 329 FNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYALNLPAIETYIGHSIPVSKYD 385 (423)
T ss_pred EEECCCCCHHHEECCCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 996998974551004654127899468999873999999999999968967501368