HHsearch alignment for GI: 254780601 and conserved domain: PRK04837

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=100.00  E-value=0  Score=798.81  Aligned_cols=372  Identities=31%  Similarity=0.443  Sum_probs=352.8

Q ss_pred             CCCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCEEE
Q ss_conf             9777--998899999997879878989999999997599699992898746899999999986104212-2556882799
Q gi|254780601|r    2 KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-FSPASAPLAL   78 (573)
Q Consensus         2 ~~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~-~~~~~~~~~l   78 (573)
T Consensus         9 ~~F~~lgL~~~ll~~L~~~g~~~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~ll~~~~~~~~~~~~p~aL   88 (423)
T PRK04837          9 QKFSDFALHPKVVEALEKKGFEYCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHHLLSHPAPEGRKVNQPRAL   88 (423)
T ss_pred             CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
T ss_conf             84824796999999999779999999999999999679988998999874999999999999983745334556786189


Q ss_pred             EECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf             98499899999999999985446987999988998799999612897599822310133210001224643189996131
Q gi|254780601|r   79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD  158 (573)
Q Consensus        79 il~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD  158 (573)
T Consensus        89 IL~PTRELa~Qi~~~~~~l~~~~~l~~~~~~GG~~~~~q~~~l~~~~dIlV~TPgRL~d~~~~~~~~l~~i~~lVlDEAD  168 (423)
T PRK04837         89 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGEGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168 (423)
T ss_pred             EEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHH
T ss_conf             99388999999999999974325845999989988799999871799989989189999986422123664289963446


Q ss_pred             CCCCCHHHHHHHHHHHHCC--CCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHH
Q ss_conf             1001001235788875214--33422563111122200111121012333323332325665200000000000245542
Q gi|254780601|r  159 EMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV  236 (573)
Q Consensus       159 ~ml~~gf~~~i~~i~~~~p--~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~  236 (573)
T Consensus       169 ~lld~gF~~~i~~i~~~~p~~~~r~~~lfSATl~~~v~~la~~~l~~p~~i~v~~~~~~~~~i~~~~~~~~~~~K~~~L~  248 (423)
T PRK04837        169 RMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQ  248 (423)
T ss_pred             HHHHCCCHHHHHHHHHHCCCCHHEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECHHHHHHHHH
T ss_conf             54302639999999996896221089997036888999999997789879996577656654269999917277999999


Q ss_pred             HCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEE
Q ss_conf             00102356416775130233456555554226663010489999999999866544881499853865001457887338
Q gi|254780601|r  237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV  316 (573)
Q Consensus       237 ~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~V  316 (573)
T Consensus       249 ~ll~~~~~~k~iIF~nt~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~l~~F~~g~~~vLVaTDvaaRGLDi~~V~~V  328 (423)
T PRK04837        249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVPQKKRLRILEQFTRGDLDILVATDVAARGLHIPDVTHV  328 (423)
T ss_pred             HHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEE
T ss_conf             99984088746886162888999999997659817872254579999999999976999899870043277772679889


Q ss_pred             EEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             970588747899986030103788860256405999999999999850664105689
Q gi|254780601|r  317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP  373 (573)
Q Consensus       317 in~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~P  373 (573)
T Consensus       329 InyD~P~~~~~YiHRiGRTgRaG~~G~aitf~~~~~~~~l~~ie~~~~~~i~~~~~~  385 (423)
T PRK04837        329 FNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYALNLPAIETYIGHSIPVSKYD  385 (423)
T ss_pred             EEECCCCCHHHEECCCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf             996998974551004654127899468999873999999999999968967501368