HHsearch alignment for GI: 254780601 and conserved domain: PRK04914
>PRK04914 ATP-dependent helicase HepA; Validated.
Probab=99.89 E-value=4.3e-20 Score=154.31 Aligned_cols=347 Identities=17% Similarity=0.230 Sum_probs=206.7
Q ss_pred CCCHHHHHHHHHHHCCC--CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHH
Q ss_conf 78989999999997599--699992898746899999999986104212255688279998499899999999999-985
Q gi|254780601|r 22 NLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLY 98 (573)
Q Consensus 22 ~pt~iQ~~~ip~~l~g~--d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~-~l~ 98 (573)
T Consensus 151 ~l~pHQ~~ia~~v~~r~~PRvLLADEVGLGKTIEAGLIl~ell~rgra-------~RvLIvvP~~-L~~QW~~EL~~KF- 221 (955)
T PRK04914 151 GLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGLIIHQQLLTGRA-------ERVLIIVPET-LQHQWLVEMLRRF- 221 (955)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC-------CEEEEECCHH-HHHHHHHHHHHHC-
T ss_conf 656379999999971458848970588886899999999999974877-------7799992779-9899999999983-
Q ss_pred HHCCCEEEEEECCCCHHHHHHHHCCC----CEEEEECCCCHHHHHHCCC-----CCCCCCEEEEEECCCCCCCCH-HHHH
Q ss_conf 44698799998899879999961289----7599822310133210001-----224643189996131100100-1235
Q gi|254780601|r 99 AKTGVVVAVCIGGVSVHRERRDLQNG----AHIVVGTPGRLCDHIRGKG-----LNISHLKAVVLDEADEMLDLG-FRDD 168 (573)
Q Consensus 99 ~~~~~~v~~~~gg~~~~~q~~~l~~~----~~iiv~TPgrl~d~~~~~~-----l~l~~v~~lVlDEaD~ml~~g-f~~~ 168 (573)
T Consensus 222 -~L~f~i---~D~~r~~~-~~~~~~NpF~~~~~vI~Sl----d~l~~~~~~~e~l~~a~WDLVIVDEAHhL~~~~~~~s~ 292 (955)
T PRK04914 222 -NLRFSL---FDEERCAE-AQADADNPFETEQLVICSL----DFLRKNKKRLEQALDAEWDLLVVDEAHHLVWSEEAPSR 292 (955)
T ss_pred -CCCCEE---ECCHHHHH-HHCCCCCCCCCCCEEEEEH----HHHCCCHHHHHHHHCCCCCEEEEHHHHHHCCCCCCCCH
T ss_conf -998099---55188887-5335799754589799878----99603967899873389888997134453058878887
Q ss_pred HHHHHHHCC-CCCCEEEEECCCCC-C---------------C----------------HHHHHHHCCCCCC---------
Q ss_conf 788875214-33422563111122-2---------------0----------------0111121012333---------
Q gi|254780601|r 169 IEFILDSSP-KKRRMLMFSATISP-A---------------I----------------TTLAKNYQKDAVR--------- 206 (573)
Q Consensus 169 i~~i~~~~p-~~~q~~l~SAT~~~-~---------------i----------------~~l~~~~~~~p~~--------- 206 (573)
T Consensus 293 ~y~lve~La~~~~~lLLLTATP~QlG~e~~Fa~L~LLDPdrF~d~~~F~~e~~~y~~va~~v~~L~~~~~l~~~~~~~l~ 372 (955)
T PRK04914 293 EYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEEQQYRPVADAVQALLDGEKLSDDALNALG 372 (955)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99999999851597699847998898666898852779421158888998887557899999986315668889999999
Q ss_pred --C----------CCC------------------CCCCCC--------CCCC---HHC-----C----------------
Q ss_conf --3----------233------------------323256--------6520---000-----0----------------
Q gi|254780601|r 207 --V----------NIA------------------SENRQH--------SDID---YRA-----V---------------- 224 (573)
Q Consensus 207 --i----------~~~------------------~~~~~~--------~~i~---~~~-----~---------------- 224 (573)
T Consensus 373 ~~l~e~~~~~l~~~~~~~~~~~~~~r~~li~~Lldr~gtgrvlfRntRa~v~gfp~R~l~~~~l~~~~~~~~~~~~~~~~ 452 (955)
T PRK04914 373 ELLGEQDIEPLLQAINSDSEDAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPYPLPLPEQYQTAIRKSLEA 452 (955)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 98644114478987521444569999999999986232157777656777431655453105678715678765432324
Q ss_pred ---------------------CCCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHH-CCCCCCCCCCCCCHHH
Q ss_conf ---------------------000000245542001023564167751302334565555542-2666301048999999
Q gi|254780601|r 225 ---------------------LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE-HLFQVVALSGELSQQE 282 (573)
Q Consensus 225 ---------------------~v~~~~k~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~-~g~~~~~lhg~~~q~~ 282 (573)
T Consensus 453 ~~~~~l~~E~~~~~~~~~~~~~~~~D~rv~~Li~~Lk~~~~eKvLVFte~~~Ta~~L~~~Lr~~~Gi~~avfh~gms~~E 532 (955)
T PRK04914 453 RARDMLYPEQIYQEFEGDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAETALQLEQALREREGIRAAVFHEGMSIIE 532 (955)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
T ss_conf 67875173566654565565542138899999999985779858999683899999999998755995699709999899
Q ss_pred HHHHHHHHHCCC--EEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEE----CHHHHHHH
Q ss_conf 999986654488--149985386500145788733897058874789998603010378886025640----59999999
Q gi|254780601|r 283 RSNALQMMRDGR--ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI----PQNMQRRA 356 (573)
Q Consensus 283 R~~~~~~fr~g~--~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~----~~~e~~~~ 356 (573)
T Consensus 533 Rdraaa~Fa~~e~gaqVLI~TEagsEG~NLQF~~~LVnyDLPWNP~rLEQRIGRlDRiGQ~~dV~Ihvpy~~~s~q~~l~ 612 (955)
T PRK04914 533 RDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLF 612 (955)
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH
T ss_conf 99999986176778519997252124503777435235258987658899852065427867507986202898899999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999850664105689999988889986554
Q gi|254780601|r 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388 (573)
Q Consensus 357 ~~i~~~~~~~~~~~~~Ps~eeI~~~~~~~l~~ 388 (573)
T Consensus 613 ~wy~~--gl~af~~~~~~g~~v~~~~~~~l~~ 642 (955)
T PRK04914 613 RWYHE--GLNAFEHTCPTGRALYDEFGDELIP 642 (955)
T ss_pred HHHHH--HHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99998--8889755691189999999999999