HHsearch alignment for GI: 254780601 and conserved domain: PRK05580
>PRK05580 primosome assembly protein PriA; Validated.
Probab=96.31 E-value=0.029 Score=34.40 Aligned_cols=102 Identities=24% Similarity=0.242 Sum_probs=76.9
Q ss_pred CCCCHHHHHHHHCCC--CCCCCEEEEECCCHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 000002455420010--235641677513023345655555422-66630104899999999998665448814998538
Q gi|254780601|r 226 VALSDRDNAIVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEH-LFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 (573)
Q Consensus 226 v~~~~k~~~l~~ll~--~~~~~~~ivF~~t~~~~~~l~~~L~~~-g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TD 302 (573)
T Consensus 194 vTGSGKTevYl~li~~~l~~GkqvLiLvPEI~lt~q~~~rl~~~fg~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtR 273 (699)
T PRK05580 194 VTGSGKTEVYLQAIAEALAQGKQALVLVPEIALTPQLLARFRARFGARVAVLHSGLSDGERYRAWLAALRGEARVVIGTR 273 (699)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 89860799999999999973997899917678789999999987099579964889857999999999769971999736
Q ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 6500145788733897058874789998
Q gi|254780601|r 303 VAARGIDLPDLELVIHAELSSNPENLLH 330 (573)
Q Consensus 303 vaaRGiDi~~v~~Vin~d~P~~~~~yvH 330 (573)
T Consensus 274 SAv-FaP~~nLgLIIVDE--Ehd~SYKq 298 (699)
T PRK05580 274 SAL-FAPFKNLGLIIVDE--EHDDSYKQ 298 (699)
T ss_pred CEE-ECCCCCCCEEEEEC--CCCHHHCC
T ss_conf 011-06578984899973--65454446