HHsearch alignment for GI: 254780601 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=91.57 E-value=0.25 Score=28.09 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=29.3
Q ss_pred HHHHCCCCCCCHHHHHHHHHH------HCCCCEEEECCCCCCHHH
Q ss_conf 999787987898999999999------759969999289874689
Q gi|254780601|r 14 ALSERGYVNLTSVQEAILNPD------LREKDVLVSAQTGSGKTV 52 (573)
Q Consensus 14 ~l~~~g~~~pt~iQ~~~ip~~------l~g~d~i~~a~TGsGKT~ 52 (573)
T Consensus 72 tle~fDf~~~~~l~~~~i~~La~~~fi~~~~Nvil~G~~GtGKTh 116 (258)
T PRK09183 72 TFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTH 116 (258)
T ss_pred CHHHCCCCCCCCCCHHHHHHHHCCCHHHCCCCEEEECCCCCCHHH
T ss_conf 775556546886238999988258166558867998999986899