HHsearch alignment for GI: 254780601 and conserved domain: PRK09401
>PRK09401 reverse gyrase; Reviewed.
Probab=99.95 E-value=7.2e-25 Score=186.42 Aligned_cols=283 Identities=26% Similarity=0.331 Sum_probs=199.3
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
T Consensus 74 ~~G~-~~w~~Qr~WakR~~~g~SFaiiAPTG~GKTt-fgl~~sly~a--~------kgkks~~i~PT~~Lv~Q~~~kl~~ 143 (1176)
T PRK09401 74 KVGS-EPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMALYLA--K------KGKKSYIIFPTRLLVEQVVEKLRK 143 (1176)
T ss_pred HHCC-CCCHHHHHHHHHHHCCCCEEEECCCCCCHHH-HHHHHHHHHH--H------CCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 8689-9848899999998668974898889988889-9999999998--6------598399996888999999999999
Q ss_pred HHHHC--CCEEEEEECCCCHHHHHH---HHCCC-CEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCC--------
Q ss_conf 85446--987999988998799999---61289-75998223101332100012246431899961311001--------
Q gi|254780601|r 97 LYAKT--GVVVAVCIGGVSVHRERR---DLQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-------- 162 (573)
Q Consensus 97 l~~~~--~~~v~~~~gg~~~~~q~~---~l~~~-~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~-------- 162 (573)
T Consensus 144 ~~~~~~~~~~~~~y~~~~~~~~kee~~~~~~~gdfdIlitT~~fl~kn~~--~l~~~~f~fifvDDVDs~LKssKnid~~ 221 (1176)
T PRK09401 144 LAEKVGVKVRLLYYHSSLKKKEKEEFLERLEEGDFDILVTTSQFLSKNFD--ELPKDRFDFVFVDDVDAVLKSSKNIDKL 221 (1176)
T ss_pred HHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH--HCCCCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 99970998408998567766678999988655998689985676765487--6035688889993418777523409999
Q ss_pred ---CHHHHH-HHHHHHHC-------------------------CCCCCEEEEECCCCCC-CH-HHHHHHCCCCCCCCCCC
Q ss_conf ---001235-78887521-------------------------4334225631111222-00-11112101233332333
Q gi|254780601|r 163 ---LGFRDD-IEFILDSS-------------------------PKKRRMLMFSATISPA-IT-TLAKNYQKDAVRVNIAS 211 (573)
Q Consensus 163 ---~gf~~~-i~~i~~~~-------------------------p~~~q~~l~SAT~~~~-i~-~l~~~~~~~p~~i~~~~ 211 (573)
T Consensus 222 l~llGf~~e~i~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~livsSAT~~prg~r~~lfreLl----gFevg~ 297 (1176)
T PRK09401 222 LKLLGFSEEDIEKAMELIKLKRKTEELKEEIEELEEKIREIRKKKKGVLVVSSATGRPRGIRIKLFRELL----GFEVGR 297 (1176)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHH----CCCCCC
T ss_conf 9983999999999999999752343444567788999998743687499997577788885389999982----986788
Q ss_pred CCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEECCC---HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 232566520000000000024554200102356416775130---23345655555422666301048999999999986
Q gi|254780601|r 212 ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST---RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288 (573)
Q Consensus 212 ~~~~~~~i~~~~~~v~~~~k~~~l~~ll~~~~~~~~ivF~~t---~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~ 288 (573)
T Consensus 298 ~~~~lRni~D~y~~~--~~~~~~~~e~v~~l-G~GgLifv~~~~g~e~~~~~~~~l~~~g~~a~~~~~~-----~~~~le 369 (1176)
T PRK09401 298 PRFYLRNIVDVYIEP--EDLVEKLVELVKRL-GDGGLVFVPTDYGKEYAEELKEYLESHGIKAEAYSGR-----KKEFLE 369 (1176)
T ss_pred CCCCEEEEEEEECCC--CCHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECC-----CHHHHH
T ss_conf 642302125776057--66889999999984-8954999767658899999999999769669996058-----866888
Q ss_pred HHHCCCEEEEEE----CCCCCCCCCCCC-CCEEEEECCCC
Q ss_conf 654488149985----386500145788-73389705887
Q gi|254780601|r 289 MMRDGRARVCIA----TDVAARGIDLPD-LELVIHAELSS 323 (573)
Q Consensus 289 ~fr~g~~~vLV~----TDvaaRGiDi~~-v~~Vin~d~P~ 323 (573)
T Consensus 370 ~f~~Ge~dvLvG~asyyg~lvRGiDlP~~irYaiF~GvPk 409 (1176)
T PRK09401 370 KFEEGEIDVLIGVASYYGVLVRGIDLPERIRYAIFYGVPK 409 (1176)
T ss_pred HHHCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEECCCE
T ss_conf 9757886489997012452101577641168999976963