HHsearch alignment for GI: 254780601 and conserved domain: PRK11057

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional.
Probab=100.00  E-value=0  Score=371.29  Aligned_cols=333  Identities=20%  Similarity=0.296  Sum_probs=267.7

Q ss_pred             CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCH
Q ss_conf             99889999999-78798789899999999975996999928987468999999999861042122556882799984998
Q gi|254780601|r    6 NIPQVIGEALS-ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTR   84 (573)
Q Consensus         6 ~l~~~l~~~l~-~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTr   84 (573)
T Consensus         8 ~~~~~a~~~L~~~FG~~~Fr~~Q~e~i~~~l~g~D~l~~mpTG~GKSlcyQlPal~~--~----------g~tiVisPLi   75 (607)
T PRK11057          8 NLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALVL--D----------GLTLVVSPLI   75 (607)
T ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC--C----------CCEEEECCHH
T ss_conf             167799999998669843457699999999869988998789955979999999877--9----------9889986879


Q ss_pred             HHHH-HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH---CC-CCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf             9999-999999998544698799998899879999961---28-975998223101332100012246431899961311
Q gi|254780601|r   85 ELAV-QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL---QN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE  159 (573)
Q Consensus        85 ELa~-Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l---~~-~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~  159 (573)
T Consensus        76 sLm~DQv----~~L~-~~gi~a~~l~s~~~~~e~~~~~~~~~~g~~~llyvtPErl~~~~~~~~l~~~~i~~~viDEAHc  150 (607)
T PRK11057         76 SLMKDQV----DQLL-ANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPVLLAVDEAHC  150 (607)
T ss_pred             HHHHHHH----HHHH-HCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHHHCCCCEEEEEHHHH
T ss_conf             9999999----9999-7899299956999999999999999759987999885585697899999718866488530666


Q ss_pred             CCCCH--HHHHHHHH---HHHCCCCCCEEEEECCCCCCCHH-HHHH-HCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHH
Q ss_conf             00100--12357888---75214334225631111222001-1112-101233332333232566520000000000024
Q gi|254780601|r  160 MLDLG--FRDDIEFI---LDSSPKKRRMLMFSATISPAITT-LAKN-YQKDAVRVNIASENRQHSDIDYRAVLVALSDRD  232 (573)
Q Consensus       160 ml~~g--f~~~i~~i---~~~~p~~~q~~l~SAT~~~~i~~-l~~~-~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~  232 (573)
T Consensus       151 vs~WGhdFRp~Y~~l~~l~~~~~-~~p~~AlTATAt~~v~~di~~~L~l~~~~~~~-~~f~R--pNl~--~~v~~~~~~~  224 (607)
T PRK11057        151 ISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDR--PNIR--YMLMEKFKPL  224 (607)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHCC-CCCEEEEEECCCHHHHHHHHHHHCCCCCCEEE-CCCCC--CCCE--EEEEECCCHH
T ss_conf             75415500388999999999769-99748999636878999999970899980782-57788--8741--4555447739


Q ss_pred             HHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
Q ss_conf             55420010235641677513023345655555422666301048999999999986654488149985386500145788
Q gi|254780601|r  233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD  312 (573)
Q Consensus       233 ~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~  312 (573)
T Consensus       225 ~~~~~~~~~~~~~sgIIYc~trk~~e~la~~L~~~G~~~~~YHagl~~~~R~~~q~~f~~~~~~vivAT~AFGMGIdk~d  304 (607)
T PRK11057        225 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPN  304 (607)
T ss_pred             HHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCC
T ss_conf             99999987068997799969289999999999857975453058999789999999875688758997501105767777


Q ss_pred             CCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf             7338970588747899986030103788860256405999999999999
Q gi|254780601|r  313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR  361 (573)
Q Consensus       313 v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~  361 (573)
T Consensus       305 VR~ViH~~~P~s~e~yyQE~GRAGRDG~~a~c~l~y~~~D~~~~~~~i~  353 (607)
T PRK11057        305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE  353 (607)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf             6679977899999999998863525898541899856878999999985