HHsearch alignment for GI: 254780601 and conserved domain: PRK11192
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional.
Probab=100.00 E-value=0 Score=779.55 Aligned_cols=372 Identities=32% Similarity=0.496 Sum_probs=351.7
Q ss_pred CCCCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 99777--9988999999978798789899999999975996999928987468999999999861042122556882799
Q gi|254780601|r 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 (573)
Q Consensus 1 m~~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~l 78 (573)
T Consensus 2 ~~sF~~l~L~~~l~~~L~~~g~~~pT~IQ~~aIp~il~g~dvl~~A~TGSGKTlaylLPil~~l~~~~~~--~~~~~~~L 79 (417)
T PRK11192 2 VTTFEELDLDPSLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR--KSGPPRIL 79 (417)
T ss_pred CCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCC--CCCCCEEE
T ss_conf 7887777989999999997799999999999999997799889989998679999999999998752103--68996499
Q ss_pred EECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 98499899999999999985446987999988998799999612897599822310133210001224643189996131
Q gi|254780601|r 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 (573)
Q Consensus 79 il~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD 158 (573)
T Consensus 80 Il~PTrELa~Qi~~~~~~l~~~~~i~~~~i~Gg~~~~~q~~~l~~~~dIlV~TPgRL~~~l~~~~~~l~~l~~lVlDEAD 159 (417)
T PRK11192 80 ILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD 159 (417)
T ss_pred EEECHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf 99471999999999999864005730599856878799999983699989978607777886367010457489996755
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCC-HHHHHHH
Q ss_conf 10010012357888752143342256311112-220011112101233332333232566520000000000-0245542
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIV 236 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~-~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~-~k~~~l~ 236 (573)
T Consensus 160 ~mld~gF~~~i~~I~~~~~~~~Q~llfSATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~L~ 239 (417)
T PRK11192 160 RMLDMGFAQDVEHIAAETRWRKQTLLFSATLEGDGVQDFAERLLNDPVEVDAEPSRRERKKIHQWYYRADDLEHKTALLC 239 (417)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCHHHHHHHHH
T ss_conf 21113547899999864767723899973268478999999836798899964676666743699999376899999999
Q ss_pred HCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 00102356416775130233456555554226663010489999999999866544881499853865001457887338
Q gi|254780601|r 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 (573)
Q Consensus 237 ~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~V 316 (573)
T Consensus 240 ~ll~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~V~~V 319 (417)
T PRK11192 240 HLLKQEEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQKKRNEAIKRLTDGRVNVLVATDVAARGIDIDDISHV 319 (417)
T ss_pred HHHHCCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEE
T ss_conf 99853476652153112466768988653148835754001799999999999976999899981243467770469889
Q ss_pred EEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9705887478999860301037888602564059999999999998506641056899
Q gi|254780601|r 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 (573)
Q Consensus 317 in~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~Ps 374 (573)
T Consensus 320 Inyd~P~~~~~YvHRiGRTGR~G~~G~ait~v~~~d~~~~~~ie~~~~~~~~~~~~~~ 377 (417)
T PRK11192 320 INFDMPRSADTYLHRIGRTGRAGKKGTAISLVEAHDHLLLGKIERYIEEPLKRRVIDE 377 (417)
T ss_pred EEECCCCCHHHHHHHCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9979999888923306772348995489998748999999999999779887312688