HHsearch alignment for GI: 254780601 and conserved domain: PRK11192

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional.
Probab=100.00  E-value=0  Score=779.55  Aligned_cols=372  Identities=32%  Similarity=0.496  Sum_probs=351.7

Q ss_pred             CCCCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf             99777--9988999999978798789899999999975996999928987468999999999861042122556882799
Q gi|254780601|r    1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL   78 (573)
Q Consensus         1 m~~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~l   78 (573)
T Consensus         2 ~~sF~~l~L~~~l~~~L~~~g~~~pT~IQ~~aIp~il~g~dvl~~A~TGSGKTlaylLPil~~l~~~~~~--~~~~~~~L   79 (417)
T PRK11192          2 VTTFEELDLDPSLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR--KSGPPRIL   79 (417)
T ss_pred             CCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCC--CCCCCEEE
T ss_conf             7887777989999999997799999999999999997799889989998679999999999998752103--68996499


Q ss_pred             EECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf             98499899999999999985446987999988998799999612897599822310133210001224643189996131
Q gi|254780601|r   79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD  158 (573)
Q Consensus        79 il~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD  158 (573)
T Consensus        80 Il~PTrELa~Qi~~~~~~l~~~~~i~~~~i~Gg~~~~~q~~~l~~~~dIlV~TPgRL~~~l~~~~~~l~~l~~lVlDEAD  159 (417)
T PRK11192         80 ILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD  159 (417)
T ss_pred             EEECHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf             99471999999999999864005730599856878799999983699989978607777886367010457489996755


Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCC-HHHHHHH
Q ss_conf             10010012357888752143342256311112-220011112101233332333232566520000000000-0245542
Q gi|254780601|r  159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIV  236 (573)
Q Consensus       159 ~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~-~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~-~k~~~l~  236 (573)
T Consensus       160 ~mld~gF~~~i~~I~~~~~~~~Q~llfSATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~L~  239 (417)
T PRK11192        160 RMLDMGFAQDVEHIAAETRWRKQTLLFSATLEGDGVQDFAERLLNDPVEVDAEPSRRERKKIHQWYYRADDLEHKTALLC  239 (417)
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCHHHHHHHHH
T ss_conf             21113547899999864767723899973268478999999836798899964676666743699999376899999999


Q ss_pred             HCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEE
Q ss_conf             00102356416775130233456555554226663010489999999999866544881499853865001457887338
Q gi|254780601|r  237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV  316 (573)
Q Consensus       237 ~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~V  316 (573)
T Consensus       240 ~ll~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~V~~V  319 (417)
T PRK11192        240 HLLKQEEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQKKRNEAIKRLTDGRVNVLVATDVAARGIDIDDISHV  319 (417)
T ss_pred             HHHHCCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEE
T ss_conf             99853476652153112466768988653148835754001799999999999976999899981243467770469889


Q ss_pred             EEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             9705887478999860301037888602564059999999999998506641056899
Q gi|254780601|r  317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS  374 (573)
Q Consensus       317 in~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~Ps  374 (573)
T Consensus       320 Inyd~P~~~~~YvHRiGRTGR~G~~G~ait~v~~~d~~~~~~ie~~~~~~~~~~~~~~  377 (417)
T PRK11192        320 INFDMPRSADTYLHRIGRTGRAGKKGTAISLVEAHDHLLLGKIERYIEEPLKRRVIDE  377 (417)
T ss_pred             EEECCCCCHHHHHHHCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             9979999888923306772348995489998748999999999999779887312688