HHsearch alignment for GI: 254780601 and conserved domain: PRK11448
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional.
Probab=99.74 E-value=1.4e-14 Score=117.28 Aligned_cols=315 Identities=19% Similarity=0.263 Sum_probs=187.7
Q ss_pred HHHHHCCCCC---CCHHHHHHHHHHH----CC-CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCH
Q ss_conf 9999787987---8989999999997----59-96999928987468999999999861042122556882799984998
Q gi|254780601|r 13 EALSERGYVN---LTSVQEAILNPDL----RE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTR 84 (573)
Q Consensus 13 ~~l~~~g~~~---pt~iQ~~~ip~~l----~g-~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTr 84 (573)
T Consensus 404 ~~L~~~~~~~~i~lR~YQ~~AI~~v~~a~~~~~rraLl~MATGTGKTrt-aial~~rLlk~~------~~kRILFLvDR~ 476 (1126)
T PRK11448 404 QWLAEEPFDYELGLRYYQEDAIQAVEKALANGQREILLAMATGTGKTRT-AIALMYRLLKAK------RFKRILFLVDRR 476 (1126)
T ss_pred CCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH-HHHHHHHHHHCC------CCCEEEEECCHH
T ss_conf 6074289877777868899999999999980985468872488858989-999999999658------767257985658
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHC----CCCCCCCCEEEEEECCCC-
Q ss_conf 999999999999854469879999889987999996128975998223101332100----012246431899961311-
Q gi|254780601|r 85 ELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG----KGLNISHLKAVVLDEADE- 159 (573)
Q Consensus 85 ELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~----~~l~l~~v~~lVlDEaD~- 159 (573)
T Consensus 477 ~L~~QA~~~F~~~~~~~~~~~~~~~~v~~l~~--~~~~~~~rv~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDEaHRg 554 (1126)
T PRK11448 477 ALGEQALDAFKDTKIEGNQTFASIYDIKGLTD--KFPEDETKVHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDEAHRG 554 (1126)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC--CCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
T ss_conf 99999999875434545666400220010256--7878777199973078998752357677999985137989778788
Q ss_pred -CC-------CCHHHHH------HHHHHHHCCCCCCEEEEECCCCC--------CC------HHHHHHHCCC---CCCCC
Q ss_conf -00-------1001235------78887521433422563111122--------20------0111121012---33332
Q gi|254780601|r 160 -ML-------DLGFRDD------IEFILDSSPKKRRMLMFSATISP--------AI------TTLAKNYQKD---AVRVN 208 (573)
Q Consensus 160 -ml-------~~gf~~~------i~~i~~~~p~~~q~~l~SAT~~~--------~i------~~l~~~~~~~---p~~i~ 208 (573)
T Consensus 555 y~ld~em~e~e~~~rd~~s~~skyr~IldYF--DA~~iGLTATP~~~T~~~Fg~P~~~Ys~~eAV~DG~LVd~~~P~~i~ 632 (1126)
T PRK11448 555 YTLDKEMTEGELQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIE 632 (1126)
T ss_pred CCCCCCCCCCHHCCCCHHHHHHHHHHHHHHH--HHHHHCCCCCCCCCHHHHHCCCCEEECHHHHHCCCCCCCCCCCEEEE
T ss_conf 7433231100010232024777899998762--15540476799955567709973000588873047556886887997
Q ss_pred CCCC--CCC------CC-------CCC------HHCCCCCCCHH-----------HHHHHHCCCCCCCCEEEEECCCHHH
Q ss_conf 3332--325------66-------520------00000000002-----------4554200102356416775130233
Q gi|254780601|r 209 IASE--NRQ------HS-------DID------YRAVLVALSDR-----------DNAIVNILRYHGAKNAIVFCSTRAS 256 (573)
Q Consensus 209 ~~~~--~~~------~~-------~i~------~~~~~v~~~~k-----------~~~l~~ll~~~~~~~~ivF~~t~~~ 256 (573)
T Consensus 633 T~l~~~Gi~~~~~e~~~~~~~~~~~~~~~~~~de~~~~~~~fnr~v~~~~~nr~v~~~l~~~~~~~~~gKTiIFA~~~~H 712 (1126)
T PRK11448 633 TKLAKEGIHFEKGEQVEVINTQTGEIDNDTLEDELDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFCVTDAH 712 (1126)
T ss_pred EEEECCCCCCCCCCHHHHCCCHHHHHHCCCCCCCCCCCHHHHCCHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHH
T ss_conf 56510460358764344203000002025587313378888273203834799999999984588999876999278699
Q ss_pred HHHHHHHHHHC---------CCCCCCCCCCCCHHHHHHHHHHHHCCCE-EEEEECCCCCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 45655555422---------6663010489999999999866544881-4998538650014578873389705887478
Q gi|254780601|r 257 VSRFTKVLAEH---------LFQVVALSGELSQQERSNALQMMRDGRA-RVCIATDVAARGIDLPDLELVIHAELSSNPE 326 (573)
Q Consensus 257 ~~~l~~~L~~~---------g~~~~~lhg~~~q~~R~~~~~~fr~g~~-~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~ 326 (573)
T Consensus 713 Ad~Iv~~l~e~F~~~y~~~~~~~~~~It~~~~~~--~~lI~~Fkn~~~P~IAVTVDmL~TGiDVPei~nLVF~R~V~S~i 790 (1126)
T PRK11448 713 ADMVVRLLKEAFKKKYGQVEDDAIIKITGDADKV--QQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVKSRI 790 (1126)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCH--HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCHH
T ss_conf 9999999999988647876784489970888447--89999725789983899856210476664201688766756677
Q ss_pred HHHHHHCCCCCCCC
Q ss_conf 99986030103788
Q gi|254780601|r 327 NLLHRSGRTGRAGR 340 (573)
Q Consensus 327 ~yvHR~GRtgRag~ 340 (573)
T Consensus 791 ~F~QMiGRGTRlc~ 804 (1126)
T PRK11448 791 LYEQMKGRATRLCP 804 (1126)
T ss_pred HHHHHHCCCCCCCC
T ss_conf 86654167554376