HHsearch alignment for GI: 254780601 and conserved domain: PRK11776
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=100.00 E-value=0 Score=953.71 Aligned_cols=442 Identities=34% Similarity=0.539 Sum_probs=416.9
Q ss_pred CCCCCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 997779--988999999978798789899999999975996999928987468999999999861042122556882799
Q gi|254780601|r 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 (573)
Q Consensus 1 m~~f~~--l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~l 78 (573)
T Consensus 3 ~~sF~~l~L~~~ll~aL~~~G~~~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~l~~~~------~~~qaL 76 (459)
T PRK11776 3 MTAFSTLPLPPALLANLDELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR------FRVQAL 76 (459)
T ss_pred CCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC------CCCCEE
T ss_conf 68863489799999999977999999899999999977998899889985899999999998411367------898599
Q ss_pred EECCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 98499899999999999985446-98799998899879999961289759982231013321000122464318999613
Q gi|254780601|r 79 AIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 (573)
Q Consensus 79 il~PTrELa~Qv~~~~~~l~~~~-~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEa 157 (573)
T Consensus 77 IL~PTRELa~QV~~~~~~l~~~~~~ikv~~l~GG~~~~~q~~~L~~~~~IvV~TPGRl~d~l~~~~l~l~~v~~lVlDEA 156 (459)
T PRK11776 77 VLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEA 156 (459)
T ss_pred EEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf 99675999999999999998505882599998993279999997469999998958999887516632231038997062
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHH
Q ss_conf 11001001235788875214334225631111222001111210123333233323256652000000000002455420
Q gi|254780601|r 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 (573)
Q Consensus 158 D~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~~ 237 (573)
T Consensus 157 D~mLd~gF~~~i~~Il~~~p~~rQ~~lfSAT~p~~i~~l~~~~l~~p~~i~v~~~~-~~~~I~q~~~~v~~~~K~~~L~~ 235 (459)
T PRK11776 157 DRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISARFQRDPVEVKVESTH-DDSTIEQRFYEVDPDERLPALQR 235 (459)
T ss_pred HHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCC-CCCCCEEEEEEECHHHHHHHHHH
T ss_conf 45432786688999998688130268884568989999999977898999967877-79863799999771878999999
Q ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 01023564167751302334565555542266630104899999999998665448814998538650014578873389
Q gi|254780601|r 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 (573)
Q Consensus 238 ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vi 317 (573)
T Consensus 236 ll~~~~~~~~IIFcntk~~v~~l~~~L~~~g~~~~~lHg~m~q~~R~~~l~~F~~g~~~iLVaTDvaaRGIDi~~V~~VI 315 (459)
T PRK11776 236 LLLHYRPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKSLEAVI 315 (459)
T ss_pred HHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEE
T ss_conf 99736876603761748999999999986799689987999999999999999779997998810434767713598899
Q ss_pred EECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 70588747899986030103788860256405999999999999850664105689999988889986554431012220
Q gi|254780601|r 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397 (573)
Q Consensus 318 n~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~Ps~eeI~~~~~~~l~~~~~~~~~~~ 397 (573)
T Consensus 316 nyDlP~~~e~YvHRiGRTGRaG~~G~ait~vt~~e~~~l~~ie~~~~~~i~~~~~p~~~~~~------------------ 377 (459)
T PRK11776 316 NYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRAAAIEDYLGRKLNWEPLPSLSPLS------------------ 377 (459)
T ss_pred EECCCCCHHHHHHCCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC------------------
T ss_conf 97898974552020525137899657999986899999999999978998641699967556------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHC
Q ss_conf 45577666665420047899999998620111122234221111211233322222223345667788049999670227
Q gi|254780601|r 398 GDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477 (573)
Q Consensus 398 ~~~~~~~e~Ll~~~dpe~IAaALlkl~~~~~~~~e~~~~~~~~~~r~r~r~~~R~~r~~~~~R~~~~g~~r~~InvGr~d 477 (573)
T Consensus 378 -------------------------------------------------------------~~~~~~~~~~l~i~~G~k~ 396 (459)
T PRK11776 378 -------------------------------------------------------------GVPLLPPMVTLCIDGGKKD 396 (459)
T ss_pred -------------------------------------------------------------CCCCCCCEEEEEEECCCCC
T ss_conf -------------------------------------------------------------7888998599999375314
Q ss_pred CCCHHHHHHHHHHCCCCCHHHEEEEEECCCCCEEEECHHHHHHHHHHHHCC
Q ss_conf 986889999775002899888300364188506761899999999985148
Q gi|254780601|r 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528 (573)
Q Consensus 478 ~v~p~~ivgai~~~~~i~~~~IG~I~i~~~~S~vei~~~~~~~~~~~~~~~ 528 (573)
T Consensus 397 k~~~~divg~~~~~~g~~~~~iG~I~i~d~~s~v~v~~~~~~~~~~~~~~~ 447 (459)
T PRK11776 397 KLRPGDILGALTGDAGLDGAQVGKINVTDFHAYVAVERAVAKKALKKLQNG 447 (459)
T ss_pred CCCHHHHHHHHCCCCCCCHHHCCEEEEECCEEEEEECHHHHHHHHHHHCCC
T ss_conf 877788899861777988889331798366699993421099999984078