HHsearch alignment for GI: 254780601 and conserved domain: PRK12326
>PRK12326 preprotein translocase subunit SecA; Reviewed.
Probab=99.66 E-value=2.2e-13 Score=109.20 Aligned_cols=322 Identities=20% Similarity=0.206 Sum_probs=198.0
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
T Consensus 85 ~lG~-r~ydVQliGg~~L~~G~--IaEM~TGEGKTL~atlpaylnAL~G---------kgVHvVTvNDYLA~RDaewm~p 152 (775)
T PRK12326 85 TLGL-RPFDVQLLGALRLLAGD--VVEMATGEGKTLAGAIAAAGYALGG---------RRVHVITVNDYLARRDAEWMGP 152 (775)
T ss_pred HCCC-CCCHHHHHHHHHHHCCC--EEEEECCCCHHHHHHHHHHHHHHCC---------CCCEEEECCHHHHHHHHHHHHH
T ss_conf 6389-86468999899984595--3676068858999999999996369---------9808982256878876999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-----HHHH--HCCCCCCCCCEEEEEECCCCCC-CC-----
Q ss_conf 854469879999889987999996128975998223101-----3321--0001224643189996131100-10-----
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-----CDHI--RGKGLNISHLKAVVLDEADEML-DL----- 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-----~d~~--~~~~l~l~~v~~lVlDEaD~ml-~~----- 163 (573)
T Consensus 153 iy~fLGLtvg~i~~~~~~~err~a--Y~~DItY~Tn~E~GFDYLRDnm~~~~~~~vqr~~~faIVDEvDSILIDEArTPL 230 (775)
T PRK12326 153 LLEAFGLTVGWITEESTAEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPL 230 (775)
T ss_pred HHHHHCCEECCCCCCCCHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHCCCHHHHCCCCCCEEEEECCCHHHHHCCCCCE
T ss_conf 999829776537899997999984--468773115555324455132126988843677875998642000121357770
Q ss_pred ---H------HHHHHHHHHHHCCC---------CCCEEEEECCC--------------CCCCH--------HH-HHH-HC
Q ss_conf ---0------12357888752143---------34225631111--------------22200--------11-112-10
Q gi|254780601|r 164 ---G------FRDDIEFILDSSPK---------KRRMLMFSATI--------------SPAIT--------TL-AKN-YQ 201 (573)
Q Consensus 164 ---g------f~~~i~~i~~~~p~---------~~q~~l~SAT~--------------~~~i~--------~l-~~~-~~ 201 (573)
T Consensus 231 IISG~~~~~~~~~~~~~~v~~L~~~~dy~iDe~~k~v~LTe~G~~~vE~~l~~~~ly~~~~~~~~l~~v~~AL~A~~l~~ 310 (775)
T PRK12326 231 VLAGTTHRETPRGEIIRLVRELKEGKDYTTDEDRRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTEVNVALHAHVLLQ 310 (775)
T ss_pred EECCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 65089877664999999998567888879854766442251389999997088764673217899999999998999885
Q ss_pred CCCCC------------------------------------CCCCCCCCCCCCCCH-HCC--------------------
Q ss_conf 12333------------------------------------323332325665200-000--------------------
Q gi|254780601|r 202 KDAVR------------------------------------VNIASENRQHSDIDY-RAV-------------------- 224 (573)
Q Consensus 202 ~~p~~------------------------------------i~~~~~~~~~~~i~~-~~~-------------------- 224 (573)
T Consensus 311 rDvdYIV~dg~V~IVDe~TGR~m~gRrwsdGLHQAiEAKEgv~i~~e~~tlAsIT~Qn~Fr~Y~kLsGMTGTA~t~~~Ef 390 (775)
T PRK12326 311 RDVHYIVRDGAVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALINRYPTVCGMTGTALAAGEQL 390 (775)
T ss_pred CCCCEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 79747998786899516778767898467306799999649876888731454279999975227537777616699999
Q ss_pred --------------------------CCCCCHHHHHHHHCC-CCC-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf --------------------------000000245542001-023-5641677513023345655555422666301048
Q gi|254780601|r 225 --------------------------LVALSDRDNAIVNIL-RYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 (573)
Q Consensus 225 --------------------------~v~~~~k~~~l~~ll-~~~-~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg 276 (573)
T Consensus 391 ~~iY~L~V~~IPtn~P~~R~D~~D~vy~t~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNA 470 (775)
T PRK12326 391 RQFYKLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTRDVAESEELAERLVRRGVPAVVLNA 470 (775)
T ss_pred HHHHCCCEEEECCCCCCEEEECCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 99748865991799984104588816469999999999999999975998899707189899999999876998302368
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC---------------CCEEEEECCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 999999999986654488149985386500145788---------------73389705887478999860301037888
Q gi|254780601|r 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD---------------LELVIHAELSSNPENLLHRSGRTGRAGRK 341 (573)
Q Consensus 277 ~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~---------------v~~Vin~d~P~~~~~yvHR~GRtgRag~~ 341 (573)
T Consensus 471 k--~~~~EA~IIA~AG~~GaVTIATNMAGRGTDIkLGg~~e~~~~~V~elGGL~VIgterheSrRIDnQLrGRaGRQGDP 548 (775)
T PRK12326 471 K--NDAEEAAVIAEAGKYGAVTVSTQMAGRGTDIRLGGSDEADHDRVVELGGLHVVGTGRHRSQRLDNQLRGRAGRQGDP 548 (775)
T ss_pred C--CHHHHHHHHHHCCCCCCEEEECCCCCCCCCEECCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 9--72769999994599998798233678986841489722324789865990785214333467786762231237999
Q ss_pred CEEEEEECHHHHH
Q ss_conf 6025640599999
Q gi|254780601|r 342 GMSVFVIPQNMQR 354 (573)
Q Consensus 342 G~ai~l~~~~e~~ 354 (573)
T Consensus 549 GsS~FflSLEDdL 561 (775)
T PRK12326 549 GSSVFFVSWEDDV 561 (775)
T ss_pred CCCEEEEEECHHH
T ss_conf 8615899703389