HHsearch alignment for GI: 254780601 and conserved domain: PRK12904
>PRK12904 preprotein translocase subunit SecA; Reviewed.
Probab=99.71 E-value=4.7e-14 Score=113.67 Aligned_cols=320 Identities=23% Similarity=0.251 Sum_probs=196.1
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
T Consensus 77 ~lg~-~~~dvQl~gg~~l~~g~--iaEM~TGEGKTL~atlp~ylnal~g---------~gvhvvTvNdYLA~RDa~~m~~ 144 (833)
T PRK12904 77 VLGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTG---------KGVHVVTVNDYLAKRDAEWMGP 144 (833)
T ss_pred HCCC-CCCHHHHHHHHHHHCCC--EEEEECCCCHHHHHHHHHHHHHHCC---------CCEEEEECCHHHHHHHHHHHHH
T ss_conf 6589-76478999899994695--2465068858999999999997369---------9819981555777877999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-HHHHHC------CCCCCCCCEEEEEECCCCCC-CC-----
Q ss_conf 854469879999889987999996128975998223101-332100------01224643189996131100-10-----
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-CDHIRG------KGLNISHLKAVVLDEADEML-DL----- 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-~d~~~~------~~l~l~~v~~lVlDEaD~ml-~~----- 163 (573)
T Consensus 145 ~~~~lGltvg~i~~~~~~~~r~~a--Y~~ditY~tn~e~gFDyLrDnm~~~~~~~v~r~~~~aivDE~DSiLiDeArtPL 222 (833)
T PRK12904 145 LYNFLGLSVGVILSGMSPEERREA--YAADITYGTNNEFGFDYLRDNMVFSLEDRVQRGLNYAIVDEVDSILIDEARTPL 222 (833)
T ss_pred HHHHHCCEEEEECCCCCHHHHHHH--HHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHEEECCCCCE
T ss_conf 999819788043899983999998--637713412543245412555437889875012572688641132013267773
Q ss_pred ----------HHHHHHHHHHHHCC---------CCCCEEEEECCC--------------CCC------CHH-H-HHH-HC
Q ss_conf ----------01235788875214---------334225631111--------------222------001-1-112-10
Q gi|254780601|r 164 ----------GFRDDIEFILDSSP---------KKRRMLMFSATI--------------SPA------ITT-L-AKN-YQ 201 (573)
Q Consensus 164 ----------gf~~~i~~i~~~~p---------~~~q~~l~SAT~--------------~~~------i~~-l-~~~-~~ 201 (573)
T Consensus 223 iisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~al~A~~l~~ 302 (833)
T PRK12904 223 IISGPAEDSSELYKRANKFVPTLKKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHVNQALRAHYLFK 302 (833)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 88678877779999999999974787867995155775314526999998506566578432369998899999999985
Q ss_pred CCCCC------------------------------------CCCCCCCCCCCCCCH-HCC--------------------
Q ss_conf 12333------------------------------------323332325665200-000--------------------
Q gi|254780601|r 202 KDAVR------------------------------------VNIASENRQHSDIDY-RAV-------------------- 224 (573)
Q Consensus 202 ~~p~~------------------------------------i~~~~~~~~~~~i~~-~~~-------------------- 224 (573)
T Consensus 303 ~d~dYiV~d~~v~ivDe~TGR~m~grr~~~GlhQaiEaKE~v~i~~e~~t~a~iT~Qn~Fr~y~klsGMTGTa~te~~Ef 382 (833)
T PRK12904 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382 (833)
T ss_pred CCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHCCHHCCCCCCCHHHHHHH
T ss_conf 68707988790799866777626787065477999999848877888700123029889832755135677867789999
Q ss_pred --------------------------CCCCCHHHHHHHHCC-CCC-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf --------------------------000000245542001-023-5641677513023345655555422666301048
Q gi|254780601|r 225 --------------------------LVALSDRDNAIVNIL-RYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 (573)
Q Consensus 225 --------------------------~v~~~~k~~~l~~ll-~~~-~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg 276 (573)
T Consensus 383 ~~iY~l~V~~IPtn~p~~R~d~~d~iy~t~~~K~~ai~~ei~~~~~~gqPvLvGT~sve~SE~ls~~L~~~~i~h~vLNA 462 (833)
T PRK12904 383 REIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTTSIEKSELLSKLLKKAGIPHNVLNA 462 (833)
T ss_pred HHHHCCCEEECCCCCCCEEEECCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf 99868876985899985436088702079999999999999999976997899427479899999999873782776177
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--------------------------------CC-----CEEEEE
Q ss_conf 99999999998665448814998538650014578--------------------------------87-----338970
Q gi|254780601|r 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLP--------------------------------DL-----ELVIHA 319 (573)
Q Consensus 277 ~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~--------------------------------~v-----~~Vin~ 319 (573)
T Consensus 463 k--~~~~EA~Iia~AG~~gaVTiATNMAGRGTDI~LGGn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL~Vigt 540 (833)
T PRK12904 463 K--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAGLEDETEEQIAKIKAEWQKEHEEVLEAGGLHVIGT 540 (833)
T ss_pred C--HHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 3--66668899995599997687402567886821688633444432001466788888887653377886389279851
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHH
Q ss_conf 588747899986030103788860256405999
Q gi|254780601|r 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 (573)
Q Consensus 320 d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e 352 (573)
T Consensus 541 erhesrRiD~QLrGR~GRQGDpG~s~f~lSleD 573 (833)
T PRK12904 541 ERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 573 (833)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCH
T ss_conf 433346678786122145689985326541208