HHsearch alignment for GI: 254780601 and conserved domain: PRK13103
>PRK13103 secA preprotein translocase subunit SecA; Reviewed.
Probab=99.68 E-value=1.8e-13 Score=109.78 Aligned_cols=320 Identities=21% Similarity=0.230 Sum_probs=194.1
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
T Consensus 78 ~lg~-r~~dvQl~gg~~lh~g~--iaEM~TGEGKTL~atlp~ylnal~g---------~gvhvvTvNdYLA~RDae~m~~ 145 (913)
T PRK13103 78 VMGM-RHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSG---------KGVHVVTVNDYLARRDANWMRP 145 (913)
T ss_pred HCCC-CCCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHCC---------CCEEEECCCHHHHHHHHHHHHH
T ss_conf 6489-76468999899984685--1465178855999999999987559---------9709972653655866999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-HHHHHC------CCCCCCCCEEEEEECCCCCC-CC-----
Q ss_conf 854469879999889987999996128975998223101-332100------01224643189996131100-10-----
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-CDHIRG------KGLNISHLKAVVLDEADEML-DL----- 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-~d~~~~------~~l~l~~v~~lVlDEaD~ml-~~----- 163 (573)
T Consensus 146 ~y~~lGltvg~i~~~~~~~~r~~--aY~~DitY~tn~e~gFDyLRDnm~~~~~~~vqr~~~~aivDEvDSiLIDEArtPL 223 (913)
T PRK13103 146 LYEFLGLSVGIVTPFQPPEEKRA--AYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPL 223 (913)
T ss_pred HHHHHCCEEEECCCCCCHHHHHH--HCCCCCEEECCCCCCCCCCCCCHHCCHHHHCCCCCCEEEEECHHHHHHHCCCCCE
T ss_conf 99981976855189999799997--4668864435764335345733104878843667764787423555531256853
Q ss_pred ----------HHHHHHHHHHHHC--------------------CCCCCEEEEECC-------C--------------CC-
Q ss_conf ----------0123578887521--------------------433422563111-------1--------------22-
Q gi|254780601|r 164 ----------GFRDDIEFILDSS--------------------PKKRRMLMFSAT-------I--------------SP- 191 (573)
Q Consensus 164 ----------gf~~~i~~i~~~~--------------------p~~~q~~l~SAT-------~--------------~~- 191 (573)
T Consensus 224 iIsg~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~y~~de~~~~v~lt~~G~~~~e~~l~~~~~~~~~~~l~~~~~ 303 (913)
T PRK13103 224 IISGQAEDSSKLYIEINRLIPRLTQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHN 303 (913)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 65068764257899999999999876654320236678668714656587554479999999876765555310034110
Q ss_pred -----CCHH-H-HHH-HCCCCCC------------------------------------CCCCCCCCCCCCCCH-HCC--
Q ss_conf -----2001-1-112-1012333------------------------------------323332325665200-000--
Q gi|254780601|r 192 -----AITT-L-AKN-YQKDAVR------------------------------------VNIASENRQHSDIDY-RAV-- 224 (573)
Q Consensus 192 -----~i~~-l-~~~-~~~~p~~------------------------------------i~~~~~~~~~~~i~~-~~~-- 224 (573)
T Consensus 304 ~~~~~~v~~aL~A~~l~~~d~~YiV~d~~v~ivDe~TGR~m~grr~s~GlhQaiEaKE~v~i~~e~~t~a~iT~Qn~Fr~ 383 (913)
T PRK13103 304 LGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRL 383 (913)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHH
T ss_conf 24222477889999998669868998890899868888768898165368999998748977888730233019988734
Q ss_pred --------------------------------------------CCCCCHHHHHHHHCC-CC-CCCCEEEEECCCHHHHH
Q ss_conf --------------------------------------------000000245542001-02-35641677513023345
Q gi|254780601|r 225 --------------------------------------------LVALSDRDNAIVNIL-RY-HGAKNAIVFCSTRASVS 258 (573)
Q Consensus 225 --------------------------------------------~v~~~~k~~~l~~ll-~~-~~~~~~ivF~~t~~~~~ 258 (573)
T Consensus 384 y~klsGMTGTa~te~~Ef~~iY~l~Vv~IPtn~p~~R~d~~d~iy~t~~~K~~Av~~ei~~~~~~gqPVLvGT~Sve~SE 463 (913)
T PRK13103 384 YNKLSGMTGTADTEAFEFRQIYGLDVMVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSE 463 (913)
T ss_pred CCHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCEECCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 50421675673868999999868866982799986101199869838999999999999999974998899627468899
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC---CC----------------------
Q ss_conf 65555542266630104899999999998665448814998538650014578---87----------------------
Q gi|254780601|r 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP---DL---------------------- 313 (573)
Q Consensus 259 ~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~---~v---------------------- 313 (573)
T Consensus 464 ~ls~~L~~~gi~h~VLNAk--~~~~EA~Iia~AG~~gaVTIATNMAGRGTDI~LGgn~e~~~~~~~~~~~e~~~~~~~~~ 541 (913)
T PRK13103 464 HMSNLLKKEGIEHKVLNAK--YHEKEAEIIAQAGAPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADW 541 (913)
T ss_pred HHHHHHHHCCCCCEEECCC--CHHHHHHHHHHCCCCCCEEEECCCCCCCCCEECCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9999999769975120488--73799999983378997897164568986952688603444310367677899999999
Q ss_pred ------------CEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHH
Q ss_conf ------------338970588747899986030103788860256405999
Q gi|254780601|r 314 ------------ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 (573)
Q Consensus 314 ------------~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e 352 (573)
T Consensus 542 ~~~~~~V~~~GGL~VIgterheSrRiDnQLrGRsGRQGDPG~s~F~lSleD 592 (913)
T PRK13103 542 QKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECH
T ss_conf 988778986298499961655212578786074356899986548997046