HHsearch alignment for GI: 254780601 and conserved domain: PRK13104
>PRK13104 secA preprotein translocase subunit SecA; Reviewed.
Probab=99.68 E-value=2.4e-13 Score=108.92 Aligned_cols=320 Identities=20% Similarity=0.229 Sum_probs=193.4
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
T Consensus 78 ~lg~-r~~dvQl~gg~~lh~g~--iaEM~TGEGKTL~atlp~ylnal~g---------~gvhvvTvNdYLA~RDae~m~~ 145 (896)
T PRK13104 78 TLGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISG---------RGVHIVTVNDYLAKRDSQWMKP 145 (896)
T ss_pred HCCC-CCCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHCC---------CCEEEECCCHHHHHHHHHHHHH
T ss_conf 6389-76479999899984585--1465178855999999999987559---------9719972653544644999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-HHHHHC------CCCCCCCCEEEEEECCCCCC-CC-----
Q ss_conf 854469879999889987999996128975998223101-332100------01224643189996131100-10-----
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-CDHIRG------KGLNISHLKAVVLDEADEML-DL----- 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-~d~~~~------~~l~l~~v~~lVlDEaD~ml-~~----- 163 (573)
T Consensus 146 ~y~~lGltvg~i~~~~~~~~r~~a--Y~~DitY~Tn~e~gFDyLrDnm~~~~~~~vqr~~~~aivDEvDSiLiDEArtPL 223 (896)
T PRK13104 146 IYEFLGLTVGVIYPDMSHKEKQEA--YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPL 223 (896)
T ss_pred HHHHHCCEEEEECCCCCHHHHHHH--HCCCEEEECCCCCCCCCCCCCHHCCHHHHCCCCCCEEEEECHHHHHHHCCCCCE
T ss_conf 999819767341899997999997--149937967865415235721113847625667764787422354321356874
Q ss_pred ----------HHHHHHHHHHHHCC---------------CCCCEEEEECC-------CC--------------C------
Q ss_conf ----------01235788875214---------------33422563111-------12--------------2------
Q gi|254780601|r 164 ----------GFRDDIEFILDSSP---------------KKRRMLMFSAT-------IS--------------P------ 191 (573)
Q Consensus 164 ----------gf~~~i~~i~~~~p---------------~~~q~~l~SAT-------~~--------------~------ 191 (573)
T Consensus 224 iisg~~~~~~~~y~~~~~~~~~l~~~~~~~~~~dy~~de~~~~v~lt~~G~~~~e~~l~~~~~~~~~~~ly~~~~~~~~~ 303 (896)
T PRK13104 224 IISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMH 303 (896)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 75278876448999999999999862211677777987477645683546799999974521357766535513458998
Q ss_pred CCH-HHH-H-HHCCCCCC------------------------------------CCCCCCCCCCCCCCH-HCC-------
Q ss_conf 200-111-1-21012333------------------------------------323332325665200-000-------
Q gi|254780601|r 192 AIT-TLA-K-NYQKDAVR------------------------------------VNIASENRQHSDIDY-RAV------- 224 (573)
Q Consensus 192 ~i~-~l~-~-~~~~~p~~------------------------------------i~~~~~~~~~~~i~~-~~~------- 224 (573)
T Consensus 304 ~v~~al~A~~l~~~d~~YiV~d~~v~ivDe~TGR~m~grr~s~GlhQaiEaKE~v~i~~e~~t~a~iT~Qn~Fr~y~kls 383 (896)
T PRK13104 304 HVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLS 383 (896)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHCCHHC
T ss_conf 78899999999966984899889499986888877889816536899999872887788872247775999885450422
Q ss_pred ---------------------------------------CCCCCHHHHHHHHCC-CCC-CCCEEEEECCCHHHHHHHHHH
Q ss_conf ---------------------------------------000000245542001-023-564167751302334565555
Q gi|254780601|r 225 ---------------------------------------LVALSDRDNAIVNIL-RYH-GAKNAIVFCSTRASVSRFTKV 263 (573)
Q Consensus 225 ---------------------------------------~v~~~~k~~~l~~ll-~~~-~~~~~ivF~~t~~~~~~l~~~ 263 (573)
T Consensus 384 GMTGTa~te~~Ef~~iY~l~Vv~IPtn~p~~R~d~~d~vy~t~~~K~~Av~~ei~~~~~~gqPVLvGT~sve~SE~ls~~ 463 (896)
T PRK13104 384 GMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRRQPVLVGTVSIEASEFLSQL 463 (896)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEECCCCCCCEEECCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH
T ss_conf 67567676899999986887698589999612379986972899999999999999997599789934857989999999
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC---CCC---------------------------
Q ss_conf 54226663010489999999999866544881499853865001457---887---------------------------
Q gi|254780601|r 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL---PDL--------------------------- 313 (573)
Q Consensus 264 L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi---~~v--------------------------- 313 (573)
T Consensus 464 L~~~gi~h~VLNAk--~~~~EA~Iia~AG~~gaVTIATNMAGRGTDI~LGg~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 541 (896)
T PRK13104 464 LKKENIKHQVLNAK--FHEKEAQIIAEAGRPGAVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRH 541 (896)
T ss_pred HHHCCCCHHHHCCC--CHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99869924652678--7478999998338999689716556888582178751244430565511667999999999853
Q ss_pred --------CEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHH
Q ss_conf --------338970588747899986030103788860256405999
Q gi|254780601|r 314 --------ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 (573)
Q Consensus 314 --------~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e 352 (573)
T Consensus 542 ~~v~~~GGL~VigterhesrRiD~QLrGRaGRQGDPG~s~F~lSleD 588 (896)
T PRK13104 542 DEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred HHHHHCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCH
T ss_conf 34420587289860433124677786053245689986326653337