HHsearch alignment for GI: 254780601 and conserved domain: PRK13889
>PRK13889 conjugal transfer relaxase TraA; Provisional.
Probab=94.61 E-value=0.37 Score=27.01 Aligned_cols=125 Identities=20% Similarity=0.213 Sum_probs=64.2
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 787987898999999999759969-9992898746899999999986104212255688279998499899999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDV-LVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE 95 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~-i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~ 95 (573)
T Consensus 342 ~~~~~-Ls~EQ~~A~~hiT~~~~iavVvG~AGtGKSt--mL~aAReawEa-------~GyrV~GaALsGkA-------Ae 404 (992)
T PRK13889 342 ARGLV-LSGEQADALAHVTDGRDLGVVVGYAGTGKSA--MLGVAREAWEA-------AGYEVRGAALSGIA-------AE 404 (992)
T ss_pred HCCCC-CCHHHHHHHHHHCCCCCEEEEEECCCCCHHH--HHHHHHHHHHH-------CCCEEEEECCCHHH-------HH
T ss_conf 32688-7999999999864789758998338887889--99999999997-------79889811500689-------99
Q ss_pred HHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 98544698799998899879999961289759982231013321000122464318999613110010012357888752
Q gi|254780601|r 96 WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 (573)
Q Consensus 96 ~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~ 175 (573)
T Consensus 405 gLe~~sGI~S------------------------rTlAs~e~~w~~g~~~L~~~dVlVVDEAGMV-g---SRqMarll~~ 456 (992)
T PRK13889 405 NLEGGSGIAS------------------------RTIASLEHGWGQGRDLLTARDVLVIDEAGMV-G---TRQLERVLSH 456 (992)
T ss_pred HHHHCCCCCC------------------------HHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-C---HHHHHHHHHH
T ss_conf 7653479431------------------------6799999987467334789858999676557-7---4999999999
Q ss_pred CC-CCCCEEEEE
Q ss_conf 14-334225631
Q gi|254780601|r 176 SP-KKRRMLMFS 186 (573)
Q Consensus 176 ~p-~~~q~~l~S 186 (573)
T Consensus 457 Ae~AGAKVVLVG 468 (992)
T PRK13889 457 AADAGAKVVLVG 468 (992)
T ss_pred HHHCCCEEEEEC
T ss_conf 998499899948