HHsearch alignment for GI: 254780601 and conserved domain: PRK13897
>PRK13897 type IV secretion system component VirD4; Provisional.
Probab=94.53 E-value=0.016 Score=36.12 Aligned_cols=49 Identities=22% Similarity=0.034 Sum_probs=38.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 969999289874689999999998610421225568827999849989999999999998
Q gi|254780601|r 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l 97 (573)
T Consensus 158 eHvLliAPTrSGKGvG~VIPNLL~w~~-----------S~VV~DpKGEn~~~Tag~R~k~ 206 (628)
T PRK13897 158 QHALLFAPTGSGKGVGFVIPNLLFWED-----------SVVVHDIKLENYELTSGWREKQ 206 (628)
T ss_pred CEEEEECCCCCCCCCEEECCCCCCCCC-----------CEEEEECCHHHHHHHHHHHHHC
T ss_conf 369997889998872798312157999-----------8899977677999999999987