HHsearch alignment for GI: 254780601 and conserved domain: PRK13897

>PRK13897 type IV secretion system component VirD4; Provisional.
Probab=94.53  E-value=0.016  Score=36.12  Aligned_cols=49  Identities=22%  Similarity=0.034  Sum_probs=38.3

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             969999289874689999999998610421225568827999849989999999999998
Q gi|254780601|r   38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL   97 (573)
Q Consensus        38 ~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l   97 (573)
T Consensus       158 eHvLliAPTrSGKGvG~VIPNLL~w~~-----------S~VV~DpKGEn~~~Tag~R~k~  206 (628)
T PRK13897        158 QHALLFAPTGSGKGVGFVIPNLLFWED-----------SVVVHDIKLENYELTSGWREKQ  206 (628)
T ss_pred             CEEEEECCCCCCCCCEEECCCCCCCCC-----------CEEEEECCHHHHHHHHHHHHHC
T ss_conf             369997889998872798312157999-----------8899977677999999999987