HHsearch alignment for GI: 254780601 and conserved domain: PTZ00110
>PTZ00110 helicase; Provisional.
Probab=100.00 E-value=0 Score=833.52 Aligned_cols=360 Identities=31% Similarity=0.487 Sum_probs=338.4
Q ss_pred CCCCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 99777--9988999999978798789899999999975996999928987468999999999861042122556882799
Q gi|254780601|r 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 (573)
Q Consensus 1 m~~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~l 78 (573)
T Consensus 181 i~~F~~~~fp~~il~~i~~~GF~~PTPIQ~qaIPiaLsGrDvIgiAqTGSGKTLAFlLP~l~hi~~q~~-~~~~~gP~aL 259 (602)
T PTZ00110 181 VVSFEYTSFPDYILKSIEAAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL-LRPGDGPIVL 259 (602)
T ss_pred CCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCC-CCCCCCCEEE
T ss_conf 266501599999999999769999998999998798569867998789788999999999999851634-3678997699
Q ss_pred EECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 98499899999999999985446987999988998799999612897599822310133210001224643189996131
Q gi|254780601|r 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 (573)
Q Consensus 79 il~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD 158 (573)
T Consensus 260 ILaPTRELA~QI~~e~~~~~~~~~ir~~~i~GG~~~~~Q~~~L~~G~dIvVATPGRLiDlL~~~~~~L~~v~yLVLDEAD 339 (602)
T PTZ00110 260 VLAPTRELAEQIREQALQFGRSSKLKNSVAYGGVPKRFQTYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD 339 (602)
T ss_pred EECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEEECHH
T ss_conf 97383999999999999971547854999979968799999871699999979238999996499874310289987577
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCC-CCCCCCCCCCC-CCCCCCCHHCCCCCCCHHHHHHH
Q ss_conf 10010012357888752143342256311112220011112101-23333233323-25665200000000000245542
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK-DAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~-~p~~i~~~~~~-~~~~~i~~~~~~v~~~~k~~~l~ 236 (573)
T Consensus 340 RMLDmGFe~qI~~Il~~i~pdRQTlLFSAT~p~~V~~LA~~~L~~~Pv~I~Vg~~~~~a~~~I~Q~v~vv~~~eK~~~L~ 419 (602)
T PTZ00110 340 RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTTCHNIKQEVFVIEEHEKRAKLK 419 (602)
T ss_pred HHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECHHHHHHHHH
T ss_conf 66354629999999985897877999955899899999999820698899936888777787058999965188999999
Q ss_pred HCCCC-CCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCE
Q ss_conf 00102-35641677513023345655555422666301048999999999986654488149985386500145788733
Q gi|254780601|r 237 NILRY-HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 (573)
Q Consensus 237 ~ll~~-~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~ 315 (573)
T Consensus 420 ~lL~~~~~~~kvIIFvnTK~~ad~L~~~L~~~G~~a~~LHGd~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDI~dV~~ 499 (602)
T PTZ00110 420 ELLGQIMDGGKILIFSETKKGADTLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKHPIMIATDVASRGLDVRDVKY 499 (602)
T ss_pred HHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCE
T ss_conf 99985278996899929738999999999867995798208899999999999997699988988222331555157987
Q ss_pred EEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf 8970588747899986030103788860256405999999999999
Q gi|254780601|r 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 (573)
Q Consensus 316 Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~ 361 (573)
T Consensus 500 VINYD~P~~~edYVHRIGRTGRAG~kG~A~TF~Tpd~~~~a~~Lv~ 545 (602)
T PTZ00110 500 VINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRSARELVK 545 (602)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH
T ss_conf 9995897980221013561506899316999977770778999999