HHsearch alignment for GI: 254780601 and conserved domain: TIGR00595
>TIGR00595 priA primosomal protein N'; InterPro: IPR005259 All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.; GO: 0003677 DNA binding, 0006260 DNA replication.
Probab=99.36 E-value=2e-10 Score=89.33 Aligned_cols=290 Identities=22% Similarity=0.281 Sum_probs=155.0
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECC-CCHHH---H
Q ss_conf 9928987468999999999861042122556882799984998999999999999854469879999889-98799---9
Q gi|254780601|r 42 VSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG-VSVHR---E 117 (573)
Q Consensus 42 ~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg-~~~~~---q 117 (573)
T Consensus 2 l~G~tGsGkte~y~~~~~~~l~---------~g~~~~~l~Pei~l~~q~~~~~~~~---fg~~~~~~h~~~l~~~~~~~~ 69 (524)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLA---------LGKSALVLVPEIALTPQTLQRFKGR---FGSQVAVLHSGKLSDSEKLDA 69 (524)
T ss_pred CCCCCCCCHHHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHHH---HCCCHHHHCCCCCCCHHHHHH
T ss_conf 5456788616888999999973---------3771789704211016789999997---187201010013673456889
Q ss_pred HHHHCCC-CEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCC-C---CC-H-H-HHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 9961289-759982231013321000122464318999613110-0---10-0-1-235788875214334225631111
Q gi|254780601|r 118 RRDLQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM-L---DL-G-F-RDDIEFILDSSPKKRRMLMFSATI 189 (573)
Q Consensus 118 ~~~l~~~-~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~m-l---~~-g-f-~~~i~~i~~~~p~~~q~~l~SAT~ 189 (573)
T Consensus 70 w~~~~~g~~~~v~G~rsa~f-------~P~~~lglii~deehd~~yk~~~~~p~y~ar~~~~-~~~~~~~~p~~lgsatP 141 (524)
T TIGR00595 70 WRKVKLGEALVVIGTRSALF-------LPLKNLGLIIVDEEHDSSYKQEELPPRYHARDVAV-YRAKLFNCPVVLGSATP 141 (524)
T ss_pred HHHHHCCCCEEEECCCHHHH-------CCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHH-HHHHHCCCCEEECCCCC
T ss_conf 99985186005640303432-------46211454787346452100136885520678898-87640488578805672
Q ss_pred CCCCHH---------------HHHHHCC-CCCCCCCCCCCCCC-----CCC---------------CHHC----------
Q ss_conf 222001---------------1112101-23333233323256-----652---------------0000----------
Q gi|254780601|r 190 SPAITT---------------LAKNYQK-DAVRVNIASENRQH-----SDI---------------DYRA---------- 223 (573)
Q Consensus 190 ~~~i~~---------------l~~~~~~-~p~~i~~~~~~~~~-----~~i---------------~~~~---------- 223 (573)
T Consensus 142 ~le~~~~~~~~~~~p~~~~~~l~~r~~~~~~p~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~f~n~rg~~~ 221 (524)
T TIGR00595 142 SLESYHNAKRGKYRPQRHLLVLPRRVGGRKPPEVKLIDLRKEPRQGNRSFLSPELLTALEETLAAGEQAILFLNRRGYSP 221 (524)
T ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 27899998716656203211101320577575156762210002132102258999999988741670689861556653
Q ss_pred ----------CCCCCCH------H--H----HHHHHCCCCCCC---------CEE-EEECCCHHHHHHHHHHHHHC--CC
Q ss_conf ----------0000000------2--4----554200102356---------416-77513023345655555422--66
Q gi|254780601|r 224 ----------VLVALSD------R--D----NAIVNILRYHGA---------KNA-IVFCSTRASVSRFTKVLAEH--LF 269 (573)
Q Consensus 224 ----------~~v~~~~------k--~----~~l~~ll~~~~~---------~~~-ivF~~t~~~~~~l~~~L~~~--g~ 269 (573)
T Consensus 222 ~~~c~~cg~~~~cp~c~~~~~~h~~~~~g~p~l~ch~c~~~~~~p~~cp~c~~~~~~~~~g--~G~~~~~~~l~~~~p~~ 299 (524)
T TIGR00595 222 NLLCRSCGYVLECPNCDVSLTYHKKEGNGQPKLRCHYCGYQEPVPKTCPACGSEDTLKYKG--LGTEKVEEELAKLFPGA 299 (524)
T ss_pred CEEECCCCCCEECCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECC--CCHHHHHHHHHHHCCCC
T ss_conf 0000026750105665302355321368862012210576677754364446643012035--42789999999855887
Q ss_pred CCCCCCCCCCH--HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCC------------CHHHHHHHHCCC
Q ss_conf 63010489999--9999998665448814998538650014578873389705887------------478999860301
Q gi|254780601|r 270 QVVALSGELSQ--QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS------------NPENLLHRSGRT 335 (573)
Q Consensus 270 ~~~~lhg~~~q--~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~------------~~~~yvHR~GRt 335 (573)
T Consensus 300 ~~~~~d~d~~~~~~~~~~~~~~f~~g~~d~l~Gtq~~~kG~~fp~~~l~g~~~~d~~l~~~d~r~~e~~~~l~~q~~Gr~ 379 (524)
T TIGR00595 300 RIARLDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHDFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRA 379 (524)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECHHHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 36764122123514689999997507840675003443157744203677873120025542134677888888764100
Q ss_pred CCCCCCCEEEEE-ECHHHH
Q ss_conf 037888602564-059999
Q gi|254780601|r 336 GRAGRKGMSVFV-IPQNMQ 353 (573)
Q Consensus 336 gRag~~G~ai~l-~~~~e~ 353 (573)
T Consensus 380 gr~~~~g~v~iqt~~P~~~ 398 (524)
T TIGR00595 380 GRAEDPGEVIIQTYNPGHP 398 (524)
T ss_pred CCCCCCCEEEEEEECCCHH
T ss_conf 2346887479973077516