HHsearch alignment for GI: 254780601 and conserved domain: TIGR00631
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=99.93 E-value=2.3e-24 Score=182.99 Aligned_cols=131 Identities=20% Similarity=0.301 Sum_probs=116.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEEC
Q ss_conf 23564167751302334565555542266630104899999999998665448814998538650014578873389705
Q gi|254780601|r 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 (573)
Q Consensus 241 ~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d 320 (573)
T Consensus 444 ~~~~ERvLVTTLTKkMAEdLTdYl~E~Gikv~YLHSeIdt~ER~eiirdLR~G~fDVLVGINLLREGLDlPEVSLVAILD 523 (667)
T TIGR00631 444 VARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILD 523 (667)
T ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCHHHHHHHHHC
T ss_conf 97289489982016778899999705883798714557899999999984478840886000200246511488997632
Q ss_pred -----CCCCHHHHHHHHCCCCCCCCCCEEEEEE---CH--------HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf -----8874789998603010378886025640---59--------9999999999985066410568
Q gi|254780601|r 321 -----LSSNPENLLHRSGRTGRAGRKGMSVFVI---PQ--------NMQRRAERLFREANVSVVWEPA 372 (573)
Q Consensus 321 -----~P~~~~~yvHR~GRtgRag~~G~ai~l~---~~--------~e~~~~~~i~~~~~~~~~~~~~ 372 (573)
T Consensus 524 ADKEGFLRSerSLIQTIGRAAR-N~~G~VilYAD~iT~sM~~AI~ET~RRR~~Q~~YNe~HgItP~ti 590 (667)
T TIGR00631 524 ADKEGFLRSERSLIQTIGRAAR-NVNGKVILYADKITDSMQKAIEETERRRKIQIAYNEEHGITPQTI 590 (667)
T ss_pred CCCCCCCCCCCHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 7888998663027889888752-579659997287007899999987888999999997538978854