HHsearch alignment for GI: 254780601 and conserved domain: TIGR00643
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.97 E-value=1.4e-28 Score=211.30 Aligned_cols=326 Identities=21% Similarity=0.334 Sum_probs=221.1
Q ss_pred HHHHHHHH-HCCCCCCCHHHHHHHHHHHCC--C----CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEC
Q ss_conf 89999999-787987898999999999759--9----6999928987468999999999861042122556882799984
Q gi|254780601|r 9 QVIGEALS-ERGYVNLTSVQEAILNPDLRE--K----DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81 (573)
Q Consensus 9 ~~l~~~l~-~~g~~~pt~iQ~~~ip~~l~g--~----d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~ 81 (573)
T Consensus 294 ~~l~k~~~~~LPF~-LT~aQ~r~v~EI~~DL~~~~pMnRLlQGDVGSGKT~VA~la~l~~i~---------~GYQ~ALMA 363 (721)
T TIGR00643 294 ELLEKFLAKSLPFE-LTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---------SGYQVALMA 363 (721)
T ss_pred HHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---------CCCEEEEEC
T ss_conf 79999998528887-76778999999998614787532221101066389999999999984---------698099917
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH---HHHHHCCC-CEEEEECCCCHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 99899999999999985446987999988998799---99961289-759982231013321000122464318999613
Q gi|254780601|r 82 PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR---ERRDLQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 (573)
Q Consensus 82 PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~---q~~~l~~~-~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEa 157 (573)
T Consensus 364 PTEiLA~QHy~~~~~~l~p~~~~vaLLTGs~k~~~r~~~~e~i~~G~~~~~vGTHA-----Liqe~vef~~L~lVIiDEQ 438 (721)
T TIGR00643 364 PTEILAEQHYDSLRNLLAPLGIEVALLTGSLKGKQRKELLETIASGEIHLVVGTHA-----LIQEKVEFKRLGLVIIDEQ 438 (721)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEHHHH-----HHHHHHHHHCCCEEEEECC
T ss_conf 76899999999999962354857888615667878999999986395205733135-----5452144314774899323
Q ss_pred CC--------CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC--CCHHCCCCC
Q ss_conf 11--------00100123578887521433422563111122200111121012333323332325665--200000000
Q gi|254780601|r 158 DE--------MLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVA 227 (573)
Q Consensus 158 D~--------ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~--i~~~~~~v~ 227 (573)
T Consensus 439 HRFGV~QR~~L~~KG~~~~~------~G~~PH~L~MtATPIPRTLALt--~yGDl-d~S~I-~elP~GR~pi~T~--~~~ 506 (721)
T TIGR00643 439 HRFGVEQRKKLREKGQEGSM------IGFAPHVLVMTATPIPRTLALT--VYGDL-DVSII-DELPPGRKPITTY--LIK 506 (721)
T ss_pred CCCHHHHHHHHHHHHHCCCC------CCCCCCEEEEECCCCHHHHHHH--HHHCC-EEEEE-CCCCCCCCEEEEE--EEE
T ss_conf 35607899999986220688------6777776466378814789977--65000-03343-1685459338998--884
Q ss_pred CCHH---HHHHHHCC--CCCCCCEEEEECCCH---------HHHHHHHHHHHHC---CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 0002---45542001--023564167751302---------3345655555422---66630104899999999998665
Q gi|254780601|r 228 LSDR---DNAIVNIL--RYHGAKNAIVFCSTR---------ASVSRFTKVLAEH---LFQVVALSGELSQQERSNALQMM 290 (573)
Q Consensus 228 ~~~k---~~~l~~ll--~~~~~~~~ivF~~t~---------~~~~~l~~~L~~~---g~~~~~lhg~~~q~~R~~~~~~f 290 (573)
T Consensus 507 ~~~~~aW~~~v~~~~~~E~~~GrQaYvv~PlI~ESE~lp~lk~A~~~~~~l~~~f~~~~~v~LlHGrm~~~eK~~vm~~F 586 (721)
T TIGR00643 507 HKEKGAWIDIVYEFIEEEIAKGRQAYVVYPLIEESEKLPDLKAAEALYERLKKAFLPKYNVGLLHGRMKSDEKEAVMEEF 586 (721)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 27887756899999999983289089996440320047168999999999888612210011330689847899999985
Q ss_pred HCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHH-HHCCCCCCCCCCEEEEEE-----CH---HHHHHHHHHHH
Q ss_conf 4488149985386500145788733897058874789998-603010378886025640-----59---99999999999
Q gi|254780601|r 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH-RSGRTGRAGRKGMSVFVI-----PQ---NMQRRAERLFR 361 (573)
Q Consensus 291 r~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvH-R~GRtgRag~~G~ai~l~-----~~---~e~~~~~~i~~ 361 (573)
T Consensus 587 ~~~~~~ILVsTTVIEVGVDVPnAtvMVIe~AeRFGLSQLHQLRGRVGRG~~~SyC~L~~kdei~~p~~~~~~~RL~~~~~ 666 (721)
T TIGR00643 587 REGEVDILVSTTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKDEIKNPKSESAKKRLRVMAE 666 (721)
T ss_pred HHCCCEEEEEEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHCEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHC
T ss_conf 21583699997689998617977278886655103688876350012689750799812532578886468999999851