>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.

Probab=94.94 E-value=0.11 Score=30.45 Aligned_cols=111 Identities=22% Similarity=0.290 Sum_probs=64.5 Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH--HHH Q ss_conf 999928987468999999999861042122556882799984998999999999999854469879999889987--999 Q gi|254780601|r 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV--HRE 117 (573) Q Consensus 40 ~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~--~~q 117 (573) T Consensus 39 YLF~GpRGtGKT------S~ARIfAKaLNC--------~--~~~~~PCn~-C~~C~~i~~g~~~DviEi-DAASN~gVD~ 100 (363) T TIGR02397 39 YLFSGPRGTGKT------SIARIFAKALNC--------Q--GPDGEPCNE-CESCKEINSGSSLDVIEI-DAASNNGVDD 100 (363) T ss_pred EEECCCCCCCHH------HHHHHHHHHHCC--------C--CCCCCCCCC-CCHHHHHHCCCCCCEEEE-CCCCCCCHHH T ss_conf 450285997635------589999998658--------8--787787777-502277652898666886-4865687889 Q ss_pred HHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECC Q ss_conf 99612897599822310133210001224643189996131100100123578887521--433422563111 Q gi|254780601|r 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSAT 188 (573) Q Consensus 118 ~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT 188 (573) T Consensus 101 IR~l~e~---v~y~P------------~~~kYKvYIIDEVH-MLS~~---AFNALLKTLEEPP~-hV~FIlAT 153 (363) T TIGR02397 101 IRELREN---VKYAP------------SKGKYKVYIIDEVH-MLSKS---AFNALLKTLEEPPE-HVVFILAT 153 (363) T ss_pred HHHHHHH---HCCCC------------CCCCCCEEEEECCC-CCCHH---HHHHHHHHHCCCCC-CEEEEEEC T ss_conf 9999873---03687------------55443358873230-28656---89998765227987-62888734

HHsearch alignment for GI: 254780601 and conserved domain: TIGR02397