HHsearch alignment for GI: 254780601 and conserved domain: TIGR02538
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=96.33 E-value=0.0069 Score=38.62 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHCCCCCCCCCC
Q ss_conf 222001111210123333233
Q gi|254780601|r 190 SPAITTLAKNYQKDAVRVNIA 210 (573)
Q Consensus 190 ~~~i~~l~~~~~~~p~~i~~~ 210 (573)
T Consensus 188 DAPvvKFvN~iL~DAir~GAS 208 (577)
T TIGR02538 188 DAPVVKFVNKILLDAIRKGAS 208 (577)
T ss_pred CCCCHHHHHHHHHHHHHCCCC
T ss_conf 887013387879999846886