HHsearch alignment for GI: 254780601 and conserved domain: TIGR02621
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype; InterPro: IPR013444 This entry represents a CRISPR-associated putative DEAH-box helicase, or Cas3, subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. The proteins include both DEAH and HD motifs..
Probab=99.53 E-value=4.7e-13 Score=106.98 Aligned_cols=325 Identities=20% Similarity=0.249 Sum_probs=182.0
Q ss_pred HHCCCCCCCHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC----CCCCEEEEEC-CCHHHHHH
Q ss_conf 978798789899999999975996-99992898746899999999986104212255----6882799984-99899999
Q gi|254780601|r 16 SERGYVNLTSVQEAILNPDLREKD-VLVSAQTGSGKTVAFGLALASTLLAENDRFSP----ASAPLALAIA-PTRELAVQ 89 (573)
Q Consensus 16 ~~~g~~~pt~iQ~~~ip~~l~g~d-~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~----~~~~~~lil~-PTrELa~Q 89 (573)
T Consensus 10 ~~~G~~GPfpwQ~~L~~r~~~G~~P~~~s~PTg~GKTlavi~~WlyAl~~~a~~~Grrr~~~~vP~RL~yvVdRR~vVD~ 89 (975)
T TIGR02621 10 ELTGYSGPFPWQLRLAERFVAGEPPESCSVPTGLGKTLAVIAVWLYALAIDAEQVGRRRRRRKVPRRLVYVVDRRTVVDQ 89 (975)
T ss_pred HHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEEEECCEEECC
T ss_conf 73589888658999999985489887667875323689999999999874000367324213368313788714245343
Q ss_pred HHHHHHHHHHH---------------------------CCCEEEEEECCCCHHH----HHHHHCCCCEEEEECCCCHHHH
Q ss_conf 99999998544---------------------------6987999988998799----9996128975998223101332
Q gi|254780601|r 90 VGRELEWLYAK---------------------------TGVVVAVCIGGVSVHR----ERRDLQNGAHIVVGTPGRLCDH 138 (573)
Q Consensus 90 v~~~~~~l~~~---------------------------~~~~v~~~~gg~~~~~----q~~~l~~~~~iiv~TPgrl~d~ 138 (573)
T Consensus 90 ~te~a~~i~~aL~~~pe~~Av~~vl~slr~~~~~Pa~a~pl~v~~LRGg~ad~~rDltew~~~P~rPavivgTv----Dm 165 (975)
T TIGR02621 90 STEEAEKIREALGEAPELPAVRYVLESLRSAFAIPAEAEPLAVSTLRGGFADNDRDLTEWTRDPSRPAVIVGTV----DM 165 (975)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECC----CC
T ss_conf 27899999985468887789999999732367877656652331116755302232334531789966998344----20
Q ss_pred H-----HCCC--------CC---CCCCEEEEEECCCCCCCCHHHHHHHHHHHH--CCCCC-C--EEEEECC----CCCCC
Q ss_conf 1-----0001--------22---464318999613110010012357888752--14334-2--2563111----12220
Q gi|254780601|r 139 I-----RGKG--------LN---ISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKKR-R--MLMFSAT----ISPAI 193 (573)
Q Consensus 139 ~-----~~~~--------l~---l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~--~p~~~-q--~~l~SAT----~~~~i 193 (573)
T Consensus 166 ~gSRLLFrGYg~spk~rpihAal~G~DAl~VlDEAH--l~~~f~e~L~~i~~E~~R~~d~~~~~V~~Ltatp~td~p~~~ 243 (975)
T TIGR02621 166 IGSRLLFRGYGCSPKSRPIHAALLGQDALIVLDEAH--LSPAFQETLKQIRSEQQRLEDFLPLRVVELTATPRTDTPDTL 243 (975)
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHCHHHHHHHHHH--CCHHHHHHHHHHHHHCCCHHHCCCCEECCEEEECCCCCCCCC
T ss_conf 234354413456766551122213110665433430--587899999998511047012268620313663014788654
Q ss_pred HHHHHHHCCCCC-CCCCCCCC-----------CCCCCCCHHCCCCCCCHHHHHHH-----HCCCCCCCCEEEEECCCHHH
Q ss_conf 011112101233-33233323-----------25665200000000000245542-----00102356416775130233
Q gi|254780601|r 194 TTLAKNYQKDAV-RVNIASEN-----------RQHSDIDYRAVLVALSDRDNAIV-----NILRYHGAKNAIVFCSTRAS 256 (573)
Q Consensus 194 ~~l~~~~~~~p~-~i~~~~~~-----------~~~~~i~~~~~~v~~~~k~~~l~-----~ll~~~~~~~~ivF~~t~~~ 256 (573)
T Consensus 244 ~~l~~~d~~~~~~~~rL~~kk~~~L~p~~de~~~~~~v~~~~~~~~DGkaaaalteqaWsrakels~g~~~~Vf~~~~~~ 323 (975)
T TIGR02621 244 TLLSAEDYKHPVLKKRLDAKKEVKLDPQSDEKRLSEDVKELDLKMKDGKAAAALTEQAWSRAKELSSGEAILVFCNTVDE 323 (975)
T ss_pred CCCCCCCCCCCHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
T ss_conf 22355101031332043412021047826899988511355422003056788777776665541278669998768430
Q ss_pred HHHHHHHHHHCCCCCCCCCC-------CCCHHHHHHHHHHHHC-----------CCEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 45655555422666301048-------9999999999866544-----------88149985386500145788733897
Q gi|254780601|r 257 VSRFTKVLAEHLFQVVALSG-------ELSQQERSNALQMMRD-----------GRARVCIATDVAARGIDLPDLELVIH 318 (573)
Q Consensus 257 ~~~l~~~L~~~g~~~~~lhg-------~~~q~~R~~~~~~fr~-----------g~~~vLV~TDvaaRGiDi~~v~~Vin 318 (573)
T Consensus 324 v~~v~a~L~k~~~~~~~ltG~vr~~~~d~la-r~~~~~~~~Lpp~~~~s~g~~~~g~~~vVaTst~EVGadld-fdhLvt 401 (975)
T TIGR02621 324 VKKVVAKLPKEARRLEDLTGTVRGLERDMLA-RRGEIFNRFLPPYRSGSEGRPQQGTVYVVATSTGEVGADLD-FDHLVT 401 (975)
T ss_pred HHHHHHHCCCCCCCHHHHCCCCCCCCCCCCC-CCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCEEECCCCC-CCHHHH
T ss_conf 6898864577454077628810433478520-01314531487645677366899877999732425503443-111221
Q ss_pred ECCCCCHHHHHHHHCCCCCCCCCCE-EEEEECH
Q ss_conf 0588747899986030103788860-2564059
Q gi|254780601|r 319 AELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQ 350 (573)
Q Consensus 319 ~d~P~~~~~yvHR~GRtgRag~~G~-ai~l~~~ 350 (573)
T Consensus 402 ~~~--~~~sl~QRfGRvnR~G~r~~~~~~iVh~ 432 (975)
T TIGR02621 402 DLA--PFESLVQRFGRVNRFGERLDGSIAIVHS 432 (975)
T ss_pred CCC--HHHHHHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf 144--2457865430020002231650589856