HHsearch alignment for GI: 254780601 and conserved domain: TIGR02782
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=95.97 E-value=0.026 Score=34.72 Aligned_cols=119 Identities=27% Similarity=0.327 Sum_probs=69.8
Q ss_pred CCHHHHHHHHH-HHCCCCEEEECCCCCCHHH-HHHHHHHHHHHC-CCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 89899999999-9759969999289874689-999999998610-42122556882799984998999999999999854
Q gi|254780601|r 23 LTSVQEAILNP-DLREKDVLVSAQTGSGKTV-AFGLALASTLLA-ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA 99 (573)
Q Consensus 23 pt~iQ~~~ip~-~l~g~d~i~~a~TGsGKT~-af~lp~l~~l~~-~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~ 99 (573)
T Consensus 124 mtaaQ~d~l~~Av~ar~NIlv~GGTGSGKTTLaN--Alla~I~~l~~------P~dR~vIiEDT~El--QC~--A~N~-- 189 (315)
T TIGR02782 124 MTAAQRDVLREAVAARKNILVVGGTGSGKTTLAN--ALLAEIAKLND------PDDRVVIIEDTAEL--QCA--AENL-- 189 (315)
T ss_pred CCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH--HHHHHHHHCCC------CCCEEEEEECCHHH--HHC--CCCE--
T ss_conf 5578999999999712988998145885799999--99998852169------99618998547132--013--7870--
Q ss_pred HCCCEEEEEECCCCHHHHHH-HHCCCCE-EEEECC--CCHHHHHHC-CCCCCCCCEEEEEECC
Q ss_conf 46987999988998799999-6128975-998223--101332100-0122464318999613
Q gi|254780601|r 100 KTGVVVAVCIGGVSVHRERR-DLQNGAH-IVVGTP--GRLCDHIRG-KGLNISHLKAVVLDEA 157 (573)
Q Consensus 100 ~~~~~v~~~~gg~~~~~q~~-~l~~~~~-iiv~TP--grl~d~~~~-~~l~l~~v~~lVlDEa 157 (573)
T Consensus 190 -V~lrT~d~-~Gi~M~~LLk~TLRlRPDRI~VGEVRg~eAL~LLKAWNTGHPGGi~TiHAn~a 250 (315)
T TIGR02782 190 -VALRTSDD-VGISMTRLLKATLRLRPDRIIVGEVRGGEALDLLKAWNTGHPGGIATIHANNA 250 (315)
T ss_pred -EEEECCCC-CCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCH
T ss_conf -68744898-66147888887500588733563014389999986405899530203314886