HHsearch alignment for GI: 254780601 and conserved domain: TIGR02788
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=94.72 E-value=0.03 Score=34.30 Aligned_cols=169 Identities=15% Similarity=0.176 Sum_probs=70.1
Q ss_pred HHHHCCCCCCCCCEEEEEECCCCCCCC-------HHHHHHHHHHHH-CCCCCCEEEEECCCCCC---CHHHHHHHCCCCC
Q ss_conf 321000122464318999613110010-------012357888752-14334225631111222---0011112101233
Q gi|254780601|r 137 DHIRGKGLNISHLKAVVLDEADEMLDL-------GFRDDIEFILDS-SPKKRRMLMFSATISPA---ITTLAKNYQKDAV 205 (573)
Q Consensus 137 d~~~~~~l~l~~v~~lVlDEaD~ml~~-------gf~~~i~~i~~~-~p~~~q~~l~SAT~~~~---i~~l~~~~~~~p~ 205 (573)
T Consensus 110 dy~~~G~--F~~ar~~~~~~~~~~~d~~~~L~el~~~g~~~~Fl~~Ai~~~knIii~GGTgSGKTTf~kal~~~IP~~ER 187 (328)
T TIGR02788 110 DYEEKGF--FDTARAVVVPASTELSDKDEELLELLDAGDIKEFLRLAIASRKNIIISGGTGSGKTTFLKALVKEIPKDER 187 (328)
T ss_pred HHHHCCC--CCEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCC
T ss_conf 9962798--54477763144344346899999998628887999999873891999906897189999999732762252
Q ss_pred CCCCCCCC----CCCCCCCHHCCCCC-CC--HH---HHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHH--CCC--CC
Q ss_conf 33233323----25665200000000-00--02---45542001023564167751302334565555542--266--63
Q gi|254780601|r 206 RVNIASEN----RQHSDIDYRAVLVA-LS--DR---DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE--HLF--QV 271 (573)
Q Consensus 206 ~i~~~~~~----~~~~~i~~~~~~v~-~~--~k---~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~--~g~--~~ 271 (573)
T Consensus 188 ~iTIED~~E~~~~hhpN~V~L~ysk~v~~g~~~vt~~~Ll~scLRM-rPDRI--~Lg-ELRG~Eaf~F~~~~nsGHpGsi 263 (328)
T TIGR02788 188 LITIEDTRELFLPHHPNKVHLFYSKGVGQGSAKVTPKDLLESCLRM-RPDRI--LLG-ELRGDEAFDFIRAVNSGHPGSI 263 (328)
T ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCC-CCCHH--HHH-HHCCHHHHHHHHHHCCCCCCCE
T ss_conf 7888520114788898645655346423443568989999997117-74057--674-3033257888875205988605
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC--------CCEEEEEC
Q ss_conf 01048999999999986654488149985386500145788--------73389705
Q gi|254780601|r 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD--------LELVIHAE 320 (573)
Q Consensus 272 ~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~--------v~~Vin~d 320 (573)
T Consensus 264 TT~HA~s~~~A----f~ql-----a~l~k~s~~g~gL~~~~I~~~~~~~iDiVvq~~ 311 (328)
T TIGR02788 264 TTVHAGSPEEA----FEQL-----ALLVKESQAGLGLDYADIVKLLREVIDIVVQLE 311 (328)
T ss_pred EEEEECCHHHH----HHHH-----HHHHHCCHHHCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 67871898999----9999-----998720254358888999977421144789963